Clone BO11827 Report

Search the DGRC for BO11827

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:118
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG14375-RA
Protein status:BO11827.pep: validated full length
Sequenced Size:442

Clone Sequence Records

BO11827.5prime Sequence

440 bp (439 high quality bases) assembled on 2006-04-19

> BO11827.5prime
GAAGTTATCAGTCGACATGAAATCCACCATATCTTTGCTACTGGTCGTTA
TCTGCACCGTGGTCCTGGCCGCGCAACAGAGCCAAGCGAAAAAGGGATGC
CAGGCCTACGGTCATGTGTGCTACGGTGGTCATGGCAAGCGCTCTCTGAG
CCCCGGATCCGGGTCTGGAACGGGAGTGGGCGGGGGAATGGGCGAGGCAG
CCTCCGGGGGGCAGGAACCGGACTATGTGCGTCCGAATGGCCTACTGCCC
ATGATGGCGCCAAATGAACAGGTGCCGCTCGAGGGCGACTTTAATGACTA
TCCCGCCCGTCAGGTGCTTTACAAAATCATGAAATCATGGTTTAACCGAC
CTCGCCGACCCGCCTCTCGCCTGGGTGAACTTGATTATCCCTTGGCCAAT
TCCGCCGAATTGAATGGCGTGAACGCAAGCTTTCTAGACC

BO11827.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG14375-PA 411 CG14375-RA 1..408 17..424 2040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
CCHa2-RC 1322 CG14375-RC 297..705 16..424 2045 100 Plus
CCHa2-RB 1281 CG14375-RB 256..664 16..424 2045 100 Plus
CCHa2-RA 1167 CG14375-RA 142..550 16..424 2045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13390048..13390295 340..93 1240 100 Minus
3R 32079331 3R 13389676..13389760 424..340 425 100 Minus
3R 32079331 3R 13391865..13391941 92..16 385 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:26:53 has no hits.

BO11827.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:56 Download gff for BO11827.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14375-PA 1..411 17..428 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:46:10 Download gff for BO11827.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14375-PA 1..411 17..428 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 03:05:39 Download gff for BO11827.5prime
Subject Subject Range Query Range Percent Splice Strand
CCHa2-RA 137..554 10..429 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:19:33 Download gff for BO11827.5prime
Subject Subject Range Query Range Percent Splice Strand
CCHa2-RA 137..554 10..429 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:19:33 Download gff for BO11827.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13389672..13389759 341..429 97 <- Minus
3R 13390048..13390295 93..340 100 <- Minus
3R 13391865..13391945 11..92 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 03:05:39 Download gff for BO11827.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9215394..9215481 341..429 97 <- Minus
arm_3R 9215770..9216017 93..340 100 <- Minus
arm_3R 9217587..9217667 11..92 96   Minus

BO11827.3prime Sequence

440 bp (439 high quality bases) assembled on 2006-04-19

> BO11827.3prime
ATGGTCTAGAAAGCTTGCGTTCACGCCATTCAATTCGGCGGAATTGGCCA
AGGGATAATCAAGTTCACCCAGGCGAGAGGCGGGTCGGCGAGGTCGGTTA
AACCATGATTTCATGATTTTGTAAAGCACCTGACGGGCGGGATAGTCATT
AAAGTCGCCCTCGAGCGGCACCTGTTCATTTGGCGCCATCATGGGCAGTA
GGCCATTCGGACGCACATAGTCCGGTTCCTGCCCCCCGGAGGCTGCCTCG
CCCATTCCCCCGCCCACTCCCGTTCCAGACCCGGATCCGGGGCTCAGAGA
GCGCTTGCCATGACCACCGTAGCACACATGACCGTAGGCCTGGCATCCCT
TTTTCGCTTGGCTCTGTTGCGCGGCCAGGACCACGGTGCAGATAACGACC
AGTAGCAAAGATATGGTGGATTTCATGTCGACTGATAACT

BO11827.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG14375-PA 411 CG14375-RA 1..408 426..19 2040 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
CCHa2-RC 1322 CG14375-RC 297..705 427..19 2045 100 Minus
CCHa2-RB 1281 CG14375-RB 256..664 427..19 2045 100 Minus
CCHa2-RA 1167 CG14375-RA 142..550 427..19 2045 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13390048..13390295 103..350 1240 100 Plus
3R 32079331 3R 13389676..13389760 19..103 425 100 Plus
3R 32079331 3R 13391865..13391941 351..427 385 100 Plus
Blast to na_te.dros performed on 2015-02-12 18:58:52 has no hits.

BO11827.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:55 Download gff for BO11827.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14375-PA 1..411 15..426 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:46:09 Download gff for BO11827.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14375-PA 1..411 15..426 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:24:02 Download gff for BO11827.3prime
Subject Subject Range Query Range Percent Splice Strand
CCHa2-RA 137..554 14..433 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:33:16 Download gff for BO11827.3prime
Subject Subject Range Query Range Percent Splice Strand
CCHa2-RA 137..554 14..433 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:33:16 Download gff for BO11827.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13389672..13389759 14..102 97 <- Plus
3R 13390048..13390295 103..350 100 <- Plus
3R 13391865..13391945 351..432 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:24:02 Download gff for BO11827.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9215394..9215481 14..102 97 <- Plus
arm_3R 9215770..9216017 103..350 100 <- Plus
arm_3R 9217587..9217667 351..432 96   Plus

BO11827.complete Sequence

442 bp assembled on 2006-10-11

GenBank Submission: FJ632211

> BO11827.complete
GAAGTTATCAGTCGACATGAAATCCACCATATCTTTGCTACTGGTCGTTA
TCTGCACCGTGGTCCTGGCCGCGCAACAGAGCCAAGCGAAAAAGGGATGC
CAGGCCTACGGTCATGTGTGCTACGGTGGTCATGGCAAGCGCTCTCTGAG
CCCCGGATCCGGGTCTGGAACGGGAGTGGGCGGGGGAATGGGCGAGGCAG
CCTCCGGGGGGCAGGAACCGGACTATGTGCGTCCGAATGGCCTACTGCCC
ATGATGGCGCCAAATGAACAGGTGCCGCTCGAGGGCGACTTTAATGACTA
TCCCGCCCGTCAGGTGCTTTACAAAATCATGAAATCATGGTTTAACCGAC
CTCGCCGACCCGCCTCTCGCCTGGGTGAACTTGATTATCCCTTGGCCAAT
TCCGCCGAATTGAATGGCGTGAACGCAAGCTTTCTAGACCAT

BO11827.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:36:15
Subject Length Description Subject Range Query Range Score Percent Strand
CCHa2-RC 411 CG14375-PC 1..408 17..424 2040 100 Plus
CCHa2-RB 411 CG14375-PB 1..408 17..424 2040 100 Plus
CCHa2-RA 411 CG14375-PA 1..408 17..424 2040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:36:16
Subject Length Description Subject Range Query Range Score Percent Strand
CCHa2-RC 1322 CG14375-RC 297..705 16..424 2045 100 Plus
CCHa2-RB 1281 CG14375-RB 256..664 16..424 2045 100 Plus
CCHa2-RA 1167 CG14375-RA 142..550 16..424 2045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13390048..13390295 340..93 1240 100 Minus
3R 32079331 3R 13389676..13389760 424..340 425 100 Minus
3R 32079331 3R 13391865..13391941 92..16 385 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:36:14 has no hits.

BO11827.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:31 Download gff for BO11827.complete
Subject Subject Range Query Range Percent Splice Strand
CG14375-RA 1..411 17..428 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:32 Download gff for BO11827.complete
Subject Subject Range Query Range Percent Splice Strand
CG14375-RA 130..547 10..429 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:04 Download gff for BO11827.complete
Subject Subject Range Query Range Percent Splice Strand
CCHa2-RA 143..550 17..426 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:31 Download gff for BO11827.complete
Subject Subject Range Query Range Percent Splice Strand
CG14375-RA 130..547 10..429 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:42 Download gff for BO11827.complete
Subject Subject Range Query Range Percent Splice Strand
CCHa2-RA 143..550 17..426 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:42 Download gff for BO11827.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13389674..13389759 341..426 97 <- Minus
3R 13390048..13390295 93..340 100 <- Minus
3R 13391865..13391940 17..92 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:04 Download gff for BO11827.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9215396..9215481 341..426 97 <- Minus
arm_3R 9215770..9216017 93..340 100 <- Minus
arm_3R 9217587..9217662 17..92 100   Minus

BO11827.pep Sequence

Translation from 16 to 442

> BO11827.pep
MKSTISLLLVVICTVVLAAQQSQAKKGCQAYGHVCYGGHGKRSLSPGSGS
GTGVGGGMGEAASGGQEPDYVRPNGLLPMMAPNEQVPLEGDFNDYPARQV
LYKIMKSWFNRPRRPASRLGELDYPLANSAELNGVNASFLDH

BO11827.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
CCHa2-PC 136 CG14375-PC 1..136 1..136 720 100 Plus
CCHa2-PB 136 CG14375-PB 1..136 1..136 720 100 Plus
CCHa2-PA 136 CG14375-PA 1..136 1..136 720 100 Plus