Clone Sequence Records
BO11827.5prime Sequence
440 bp (439 high quality bases) assembled on 2006-04-19
> BO11827.5prime
GAAGTTATCAGTCGACATGAAATCCACCATATCTTTGCTACTGGTCGTTA
TCTGCACCGTGGTCCTGGCCGCGCAACAGAGCCAAGCGAAAAAGGGATGC
CAGGCCTACGGTCATGTGTGCTACGGTGGTCATGGCAAGCGCTCTCTGAG
CCCCGGATCCGGGTCTGGAACGGGAGTGGGCGGGGGAATGGGCGAGGCAG
CCTCCGGGGGGCAGGAACCGGACTATGTGCGTCCGAATGGCCTACTGCCC
ATGATGGCGCCAAATGAACAGGTGCCGCTCGAGGGCGACTTTAATGACTA
TCCCGCCCGTCAGGTGCTTTACAAAATCATGAAATCATGGTTTAACCGAC
CTCGCCGACCCGCCTCTCGCCTGGGTGAACTTGATTATCCCTTGGCCAAT
TCCGCCGAATTGAATGGCGTGAACGCAAGCTTTCTAGACC
BO11827.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14375-PA | 411 | CG14375-RA | 1..408 | 17..424 | 2040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:26:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CCHa2-RC | 1322 | CG14375-RC | 297..705 | 16..424 | 2045 | 100 | Plus |
CCHa2-RB | 1281 | CG14375-RB | 256..664 | 16..424 | 2045 | 100 | Plus |
CCHa2-RA | 1167 | CG14375-RA | 142..550 | 16..424 | 2045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:26:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13390048..13390295 | 340..93 | 1240 | 100 | Minus |
3R | 32079331 | 3R | 13389676..13389760 | 424..340 | 425 | 100 | Minus |
3R | 32079331 | 3R | 13391865..13391941 | 92..16 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:26:53 has no hits.
BO11827.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:56 Download gff for
BO11827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14375-PA | 1..411 | 17..428 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:46:10 Download gff for
BO11827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14375-PA | 1..411 | 17..428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 03:05:39 Download gff for
BO11827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CCHa2-RA | 137..554 | 10..429 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:19:33 Download gff for
BO11827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CCHa2-RA | 137..554 | 10..429 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:19:33 Download gff for
BO11827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13389672..13389759 | 341..429 | 97 | <- | Minus |
3R | 13390048..13390295 | 93..340 | 100 | <- | Minus |
3R | 13391865..13391945 | 11..92 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 03:05:39 Download gff for
BO11827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9215394..9215481 | 341..429 | 97 | <- | Minus |
arm_3R | 9215770..9216017 | 93..340 | 100 | <- | Minus |
arm_3R | 9217587..9217667 | 11..92 | 96 | | Minus |
BO11827.3prime Sequence
440 bp (439 high quality bases) assembled on 2006-04-19
> BO11827.3prime
ATGGTCTAGAAAGCTTGCGTTCACGCCATTCAATTCGGCGGAATTGGCCA
AGGGATAATCAAGTTCACCCAGGCGAGAGGCGGGTCGGCGAGGTCGGTTA
AACCATGATTTCATGATTTTGTAAAGCACCTGACGGGCGGGATAGTCATT
AAAGTCGCCCTCGAGCGGCACCTGTTCATTTGGCGCCATCATGGGCAGTA
GGCCATTCGGACGCACATAGTCCGGTTCCTGCCCCCCGGAGGCTGCCTCG
CCCATTCCCCCGCCCACTCCCGTTCCAGACCCGGATCCGGGGCTCAGAGA
GCGCTTGCCATGACCACCGTAGCACACATGACCGTAGGCCTGGCATCCCT
TTTTCGCTTGGCTCTGTTGCGCGGCCAGGACCACGGTGCAGATAACGACC
AGTAGCAAAGATATGGTGGATTTCATGTCGACTGATAACT
BO11827.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14375-PA | 411 | CG14375-RA | 1..408 | 426..19 | 2040 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:58:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CCHa2-RC | 1322 | CG14375-RC | 297..705 | 427..19 | 2045 | 100 | Minus |
CCHa2-RB | 1281 | CG14375-RB | 256..664 | 427..19 | 2045 | 100 | Minus |
CCHa2-RA | 1167 | CG14375-RA | 142..550 | 427..19 | 2045 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:58:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13390048..13390295 | 103..350 | 1240 | 100 | Plus |
3R | 32079331 | 3R | 13389676..13389760 | 19..103 | 425 | 100 | Plus |
3R | 32079331 | 3R | 13391865..13391941 | 351..427 | 385 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:58:52 has no hits.
BO11827.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:55 Download gff for
BO11827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14375-PA | 1..411 | 15..426 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:46:09 Download gff for
BO11827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14375-PA | 1..411 | 15..426 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:24:02 Download gff for
BO11827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CCHa2-RA | 137..554 | 14..433 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:33:16 Download gff for
BO11827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CCHa2-RA | 137..554 | 14..433 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:33:16 Download gff for
BO11827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13389672..13389759 | 14..102 | 97 | <- | Plus |
3R | 13390048..13390295 | 103..350 | 100 | <- | Plus |
3R | 13391865..13391945 | 351..432 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:24:02 Download gff for
BO11827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9215394..9215481 | 14..102 | 97 | <- | Plus |
arm_3R | 9215770..9216017 | 103..350 | 100 | <- | Plus |
arm_3R | 9217587..9217667 | 351..432 | 96 | | Plus |
BO11827.complete Sequence
442 bp assembled on 2006-10-11
GenBank Submission: FJ632211
> BO11827.complete
GAAGTTATCAGTCGACATGAAATCCACCATATCTTTGCTACTGGTCGTTA
TCTGCACCGTGGTCCTGGCCGCGCAACAGAGCCAAGCGAAAAAGGGATGC
CAGGCCTACGGTCATGTGTGCTACGGTGGTCATGGCAAGCGCTCTCTGAG
CCCCGGATCCGGGTCTGGAACGGGAGTGGGCGGGGGAATGGGCGAGGCAG
CCTCCGGGGGGCAGGAACCGGACTATGTGCGTCCGAATGGCCTACTGCCC
ATGATGGCGCCAAATGAACAGGTGCCGCTCGAGGGCGACTTTAATGACTA
TCCCGCCCGTCAGGTGCTTTACAAAATCATGAAATCATGGTTTAACCGAC
CTCGCCGACCCGCCTCTCGCCTGGGTGAACTTGATTATCCCTTGGCCAAT
TCCGCCGAATTGAATGGCGTGAACGCAAGCTTTCTAGACCAT
BO11827.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:36:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CCHa2-RC | 411 | CG14375-PC | 1..408 | 17..424 | 2040 | 100 | Plus |
CCHa2-RB | 411 | CG14375-PB | 1..408 | 17..424 | 2040 | 100 | Plus |
CCHa2-RA | 411 | CG14375-PA | 1..408 | 17..424 | 2040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:36:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CCHa2-RC | 1322 | CG14375-RC | 297..705 | 16..424 | 2045 | 100 | Plus |
CCHa2-RB | 1281 | CG14375-RB | 256..664 | 16..424 | 2045 | 100 | Plus |
CCHa2-RA | 1167 | CG14375-RA | 142..550 | 16..424 | 2045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:36:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13390048..13390295 | 340..93 | 1240 | 100 | Minus |
3R | 32079331 | 3R | 13389676..13389760 | 424..340 | 425 | 100 | Minus |
3R | 32079331 | 3R | 13391865..13391941 | 92..16 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:36:14 has no hits.
BO11827.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:31 Download gff for
BO11827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14375-RA | 1..411 | 17..428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:32 Download gff for
BO11827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14375-RA | 130..547 | 10..429 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:04 Download gff for
BO11827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CCHa2-RA | 143..550 | 17..426 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:31 Download gff for
BO11827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14375-RA | 130..547 | 10..429 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:42 Download gff for
BO11827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CCHa2-RA | 143..550 | 17..426 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:42 Download gff for
BO11827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13389674..13389759 | 341..426 | 97 | <- | Minus |
3R | 13390048..13390295 | 93..340 | 100 | <- | Minus |
3R | 13391865..13391940 | 17..92 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:04 Download gff for
BO11827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9215396..9215481 | 341..426 | 97 | <- | Minus |
arm_3R | 9215770..9216017 | 93..340 | 100 | <- | Minus |
arm_3R | 9217587..9217662 | 17..92 | 100 | | Minus |
BO11827.pep Sequence
Translation from 16 to 442
> BO11827.pep
MKSTISLLLVVICTVVLAAQQSQAKKGCQAYGHVCYGGHGKRSLSPGSGS
GTGVGGGMGEAASGGQEPDYVRPNGLLPMMAPNEQVPLEGDFNDYPARQV
LYKIMKSWFNRPRRPASRLGELDYPLANSAELNGVNASFLDH
BO11827.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CCHa2-PC | 136 | CG14375-PC | 1..136 | 1..136 | 720 | 100 | Plus |
CCHa2-PB | 136 | CG14375-PB | 1..136 | 1..136 | 720 | 100 | Plus |
CCHa2-PA | 136 | CG14375-PA | 1..136 | 1..136 | 720 | 100 | Plus |