Clone BO11829 Report

Search the DGRC for BO11829

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:118
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG4658-RA
Protein status:BO11829.pep: validated full length
Sequenced Size:1612

Clone Sequence Records

BO11829.3prime Sequence

866 bp (845 high quality bases) assembled on 2006-04-19

> BO11829.3prime
ATGGTCTAGAAAGCTTGCATTGTTGTAGTTCTGCCTGCCGCCCAGCTCGA
GGAGATATCGATCCGGATGGTCCATCCAGTCGGCGGCCGTGAGCTTCACT
GTCCGCTGCCGTTCGGCCTCCTTGATTTGCCACTTCTTGATGTCCAATTG
CACTTCGCGTGATGATTTGTCGCCGCAGCCCCACACCTCTATGGACATGA
GTCCAGCCGCCAGTCCCTTGCAGTCAATATTCTCGAAATGCTCATCGACT
GCTATAATGGGTTTTCGCGGATCGGCGCCGGCACGTAAGCCCTTCGGATA
GCCGCGTATGCTGGTGTTTAGGTAAAGAATGTTGGGCTTTTTTTCCAGTA
TCACAAACTTGGGCAGCAGCTGGATAACACAGCTGCCCTCGCCGCCCACA
AACAGATGCGTTTCCTTCCACTCACTGGGTGAGGCCACGCAATACGTCTG
TTCATCCTTGGTATGGAGCAGGACCAGTGTTGGACCCCGATAGCCGAGGA
CGTGGTGCAGAAACCGGTTGGCTCCCACGCCATGCTCATTGGAGTTGTAC
AGCAGTGTCCAGTGTGACGGCATCATCGACAGCTTGTCCTTGAAAATCTG
TACCGCTGTGGACGCGCTAACGTTGTTGTTTCCCTTTGTGGCCGGCGGTG
TCACAGTTTGGGGCTTGGAGTAGAGTGGCGGCAGAGCTCCAGCCAGCAGC
CAGGCTTGCGAAAGCGGCATCAGCGAGTCCATCTCCCTCGTGCTACCGCC
ACTAAAGTCGGTGGTATCTGTGAAGGGATTACGTTGCTCAAGCACCGGCG
TCTGCAACTCAATGCCGCATGACTGATTCTGCTGCTCTAGACCACGGTAA
GCGGTTGACAAAGTGT

BO11829.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4658-PB 1581 CG4658-RB 731..1578 866..19 4240 100 Minus
CG4658-PC 1581 CG4658-RC 731..1578 866..19 4240 100 Minus
CG4658-PA 1581 CG4658-RA 731..1578 866..19 4240 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG4658-RD 2486 CG4658-RD 1188..2035 866..19 4240 100 Minus
CG4658-RA 2323 CG4658-RA 1025..1872 866..19 4240 100 Minus
CG4658-RC 2224 CG4658-RC 926..1773 866..19 4240 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:30:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9958378..9958887 866..357 2550 100 Minus
2L 23513712 2L 9958940..9959113 358..185 870 100 Minus
2L 23513712 2L 9959548..9959717 188..19 850 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:30:26 has no hits.

BO11829.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:57 Download gff for BO11829.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4658-PC 731..1581 16..866 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:46:12 Download gff for BO11829.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4658-PA 731..1581 16..866 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 12:55:27 Download gff for BO11829.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4658-RC 926..1773 19..866 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:43 Download gff for BO11829.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4658-RC 926..1773 19..866 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:43 Download gff for BO11829.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9958378..9958885 359..866 100 -> Minus
2L 9958940..9959111 187..358 100 -> Minus
2L 9959550..9959717 19..186 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 12:55:27 Download gff for BO11829.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9958378..9958885 359..866 100 -> Minus
arm_2L 9958940..9959111 187..358 100 -> Minus
arm_2L 9959550..9959717 19..186 100   Minus

BO11829.5prime Sequence

833 bp (755 high quality bases) assembled on 2006-04-19

> BO11829.5prime
GAAGTTATCAGTCGACATGGGCAACACGAGTTCCAAGGGCGAGTCGGACG
CCAGTGAGCCACCCCTGGAGGGAGGCAAGCCGTACAAGCAGCATCAGCAG
CACAAGTCCAGTGATGCTTCCCACAACGGAGTCTCTGACGTGGGCGGCAG
CCACAACAATCTAAAGGTGACGCAGGCGCAGGGCTCGATGACCAGGTCGG
CTTCTGGCGCGGATGTCACCGAGAAGTACCTCACCCAGCTGGTGCCGGTG
GAGAAGCTAGCCGAGATTCTCAGGGAGCAGACGTCGTCCAAACTGGGCAT
TAATGGCATTGTGGCAGATGTCTTTGTGTCACAAGTCTTTCCGCAGTACG
CCGACCTGGGACAGCGGCTGTTCAACCTGATGCACTCCAACTCCAAGGCC
ACAACGAAACATCTGGGCGCCGTTGCTTTCCGGCAACAGTGCGAACGCTT
TTTGGGCATCATGGATGACTCGAAGACGCTGGAGTGCTACATTAAGATGT
ACGCCCAGGAGGAGAATCCGGACCAAATTGACAAGACGGGAGTGACGCGG
TTGCTCCACATCTGCTACACCATTGCCATGCAGCACTCGGGCAACGCCGT
GCTGTGCCCGGCCATCAACCGCACGTTCGGTTCGGTGACCAAGTCCATTT
TCCTGTGCCACGACAGTATGAGTCTGGGCTACGTTTGCCGCTGGTTCGAG
CAGAACCTGATGCGGCTGGTGCTCCTCGTGCACAAGTACTGTGTGCACAC
TTTGTCAACCGCTTACCGTGGTCTAGAGCAGCAGAATCAGTCATGCGGCA
TTGAGTTGCAGACGCCGGTGCTTGAGCAACGTA

BO11829.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4658-PB 1581 CG4658-RB 1..817 17..833 4085 100 Plus
CG4658-PC 1581 CG4658-RC 1..817 17..833 4085 100 Plus
CG4658-PA 1581 CG4658-RA 1..817 17..833 4085 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:19:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG4658-RE 1953 CG4658-RE 295..1111 17..833 4085 100 Plus
CG4658-RD 2486 CG4658-RD 458..1274 17..833 4085 100 Plus
CG4658-RA 2323 CG4658-RA 295..1111 17..833 4085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:19:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9957959..9958464 328..833 2530 100 Plus
2L 23513712 2L 9957589..9957900 17..328 1560 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:19:11 has no hits.

BO11829.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:58 Download gff for BO11829.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4658-PC 1..816 17..832 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:46:13 Download gff for BO11829.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4658-PA 1..816 17..832 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:21:22 Download gff for BO11829.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4658-RA 286..1110 7..832 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:13:06 Download gff for BO11829.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4658-RA 286..1110 7..832 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:13:06 Download gff for BO11829.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9957580..9957900 7..328 98 -> Plus
2L 9957960..9958463 329..832 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:21:22 Download gff for BO11829.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9957580..9957900 7..328 98 -> Plus
arm_2L 9957960..9958463 329..832 100   Plus

BO11829.complete Sequence

1612 bp assembled on 2006-10-11

GenBank Submission: FJ632212

> BO11829.complete
GAAGTTATCAGTCGACATGGGCAACACGAGTTCCAAGGGCGAGTCGGACG
CCAGTGAGCCACCCCTGGAGGGAGGCAAGCCGTACAAGCAGCATCAGCAG
CACAAGTCCAGTGATGCTTCCCACAACGGAGTCTCTGACGTGGGCGGCAG
CCACAACAATCTAAAGGTGACGCAGGCGCAGGGCTCGATGACCAGGTCGG
CTTCTGGCGCGGATGTCACCGAGAAGTACCTCACCCAGCTGGTGCCGGTG
GAGAAGCTAGCCGAGATTCTCAGGGAGCAGACGTCGTCCAAACTGGGCAT
TAATGGCATTGTGGCAGATGTCTTTGTGTCACAAGTCTTTCCGCAGTACG
CCGACCTGGGACAGCGGCTGTTCAACCTGATGCACTCCAACTCCAAGGCC
ACAACGAAACATCTGGGCGCCGTTGCTTTCCGGCAACAGTGCGAACGCTT
TTTGGGCATCATGGATGACTCGAAGACGCTGGAGTGCTACATTAAGATGT
ACGCCCAGGAGGAGAATCCGGACCAAATTGACAAGACGGGAGTGACGCGG
TTGCTCCACATCTGCTACACCATTGCCATGCAGCACTCGGGCAACGCCGT
GCTGTGCCCGGCCATCAACCGCACGTTCGGTTCGGTGACCAAGTCCATTT
TCCTGTGCCACGACAGTATGAGTCTGGGCTACGTTTGCCGCTGGTTCGAG
CAGAACCTGATGCGGCTGGTGCTCCTCGTGCACAAGTACTGTGTGCACAC
TTTGTCAACCGCTTACCGTGGTCTAGAGCAGCAGAATCAGTCATGCGGCA
TTGAGTTGCAGACGCCGGTGCTTGAGCAACGTAATCCCTTCACAGATACC
ACCGACTTTAGTGGCGGTAGCACGAGGGAGATGGACTCGCTGATGCCGCT
TTCGCAAGCCTGGCTGCTGGCTGGAGCTCTGCCGCCACTCTACTCCAAGC
CCCAAACTGTGACACCGCCGGCCACAAAGGGAAACAACAACGTTAGCGCG
TCCACAGCGGTACAGATTTTCAAGGACAAGCTGTCGATGATGCCGTCACA
CTGGACACTGCTGTACAACTCCAATGAGCATGGCGTGGGAGCCAACCGGT
TTCTGCACCACGTCCTCGGCTATCGGGGTCCAACACTGGTCCTGCTCCAT
ACCAAGGATGAACAGACGTATTGCGTGGCCTCACCCAGTGAGTGGAAGGA
AACGCATCTGTTTGTGGGCGGCGAGGGCAGCTGTGTTATCCAGCTGCTGC
CCAAGTTTGTGATACTGGAAAAAAAGCCCAACATTCTTTACCTAAACACC
AGCATACGCGGCTATCCGAAGGGCTTACGTGCCGGCGCCGATCCGCGAAA
ACCCATTATAGCAGTCGATGAGCATTTCGAGAATATTGACTGCAAGGGAC
TGGCGGCTGGACTCATGTCCATAGAGGTGTGGGGCTGCGGCGACAAATCA
TCACGCGAAGTGCAATTGGACATCAAGAAGTGGCAAATCAAGGAGGCCGA
ACGGCAGCGGACAGTGAAGCTCACGGCCGCCGACTGGATGGACCATCCGG
ATCGATATCTCCTCGAGCTGGGCGGCAGGCAGAACTACAACAATGCAAGC
TTTCTAGACCAT

BO11829.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG4658-RD 1581 CG4658-PD 1..1578 17..1594 7890 100 Plus
CG4658-RA 1581 CG4658-PA 1..1578 17..1594 7890 100 Plus
CG4658-RC 1581 CG4658-PC 1..1578 17..1594 7890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:20:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG4658-RD 2486 CG4658-RD 458..2035 17..1594 7890 100 Plus
CG4658-RA 2323 CG4658-RA 295..1872 17..1594 7890 100 Plus
CG4658-RC 2224 CG4658-RC 196..1773 17..1594 7890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:20:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9957959..9958887 328..1256 4645 100 Plus
2L 23513712 2L 9957589..9957900 17..328 1560 100 Plus
2L 23513712 2L 9958940..9959113 1255..1428 870 100 Plus
2L 23513712 2L 9959548..9959717 1425..1594 850 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:20:54 has no hits.

BO11829.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:11 Download gff for BO11829.complete
Subject Subject Range Query Range Percent Splice Strand
CG4658-RA 1..1581 17..1597 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:11 Download gff for BO11829.complete
Subject Subject Range Query Range Percent Splice Strand
CG4658-RA 294..1880 7..1594 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:28 Download gff for BO11829.complete
Subject Subject Range Query Range Percent Splice Strand
CG4658-RC 196..1773 17..1596 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:11 Download gff for BO11829.complete
Subject Subject Range Query Range Percent Splice Strand
CG4658-RA 294..1880 7..1594 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:51 Download gff for BO11829.complete
Subject Subject Range Query Range Percent Splice Strand
CG4658-RC 196..1773 17..1596 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:51 Download gff for BO11829.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9957589..9957900 17..328 100 -> Plus
2L 9957960..9958885 329..1254 100 -> Plus
2L 9958940..9959111 1255..1426 100 -> Plus
2L 9959550..9959717 1427..1596 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:28 Download gff for BO11829.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9957589..9957900 17..328 100 -> Plus
arm_2L 9957960..9958885 329..1254 100 -> Plus
arm_2L 9958940..9959111 1255..1426 100 -> Plus
arm_2L 9959550..9959717 1427..1596 98   Plus

BO11829.pep Sequence

Translation from 16 to 1612

> BO11829.pep
MGNTSSKGESDASEPPLEGGKPYKQHQQHKSSDASHNGVSDVGGSHNNLK
VTQAQGSMTRSASGADVTEKYLTQLVPVEKLAEILREQTSSKLGINGIVA
DVFVSQVFPQYADLGQRLFNLMHSNSKATTKHLGAVAFRQQCERFLGIMD
DSKTLECYIKMYAQEENPDQIDKTGVTRLLHICYTIAMQHSGNAVLCPAI
NRTFGSVTKSIFLCHDSMSLGYVCRWFEQNLMRLVLLVHKYCVHTLSTAY
RGLEQQNQSCGIELQTPVLEQRNPFTDTTDFSGGSTREMDSLMPLSQAWL
LAGALPPLYSKPQTVTPPATKGNNNVSASTAVQIFKDKLSMMPSHWTLLY
NSNEHGVGANRFLHHVLGYRGPTLVLLHTKDEQTYCVASPSEWKETHLFV
GGEGSCVIQLLPKFVILEKKPNILYLNTSIRGYPKGLRAGADPRKPIIAV
DEHFENIDCKGLAAGLMSIEVWGCGDKSSREVQLDIKKWQIKEAERQRTV
KLTAADWMDHPDRYLLELGGRQNYNNASFLDH

BO11829.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG4658-PD 526 CG4658-PD 1..526 1..526 2780 100 Plus
CG4658-PA 526 CG4658-PA 1..526 1..526 2780 100 Plus
CG4658-PC 526 CG4658-PC 1..526 1..526 2780 100 Plus
CG4658-PB 526 CG4658-PB 1..526 1..526 2780 100 Plus
CG4658-PE 491 CG4658-PE 1..471 1..471 2476 100 Plus