Clone Sequence Records
BO11830.3prime Sequence
474 bp (473 high quality bases) assembled on 2006-04-19
> BO11830.3prime
ATGGTCTAGAAAGCTTGCGCGCTTTATCACCAGCAACCGCAGCGGTATGT
AAGAGCTTCCGGGTACCACATCCTTGCCCTCGGGCAGGAACTTGTGCGCG
TAGTCCTTCGGAGTGGGCGTGTTGGGCGGCAGGGCGTAATCGAGGACGTT
ATCCGAGGCCGCGCCGGAAATGGCGGGCGTGCGAACCACCCACAATTGCA
TCGCCAGCGGTTTTCTGTCCGCCGGCACTTCCGATTTCCCCAGCTGCACA
TTGGCGCGGCGGGAAAAGTGGGCCTGCTCCGCCAGCTGGAAGCGCTCCAG
GTGACCTTGGATTATCCGTCGCAACTGAGCCATCGTGCTGGGCGGGGGCG
TGCCGTAGACATAGGCTTTGGCGGGGGGGCGCGGCAAGTAGTCCCGACCC
GAGGTGGCGGCACTTGCCACTGCCATTAGGGTTAACAGCCAAACAAAAGT
CCTGTACATGTCGAACTGATAACT
BO11830.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15554-PA | 444 | CG15554-RA | 1..441 | 459..19 | 2205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:06:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15554-RA | 801 | CG15554-RA | 89..536 | 459..12 | 2210 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:06:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31126643..31127070 | 439..12 | 2110 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:06:25 has no hits.
BO11830.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:59 Download gff for
BO11830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15554-PA | 1..444 | 16..459 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:46:14 Download gff for
BO11830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15554-PA | 1..444 | 16..459 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 23:29:44 Download gff for
BO11830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15554-RA | 83..538 | 7..462 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:30:08 Download gff for
BO11830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15554-RA | 85..540 | 7..462 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:30:08 Download gff for
BO11830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31126233..31126257 | 439..462 | 96 | -> | Minus |
3R | 31126644..31127074 | 7..438 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 23:29:44 Download gff for
BO11830.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26951955..26951979 | 439..462 | 96 | -> | Minus |
arm_3R | 26952366..26952796 | 7..438 | 98 | | Minus |
BO11830.5prime Sequence
474 bp (473 high quality bases) assembled on 2006-04-19
> BO11830.5prime
GAAGTTATCAGTTCGACATGTACAGGACTTTTGTTTGGCTGTTAACCCTA
ATGGCAGTGGCAAGTGCCGCCACCTCGGGTCGGGACTACTTGCCGCGCCC
CCCCGCCAAAGCCTATGTCTACGGCACGCCCCCGCCCAGCACGATGGCTC
AGTTGCGACGGATAATCCAAGGTCACCTGGAGCGCTTCCAGCTGGCGGAG
CAGGCCCACTTTTCCCGCCGCGCCAATGTGCAGCTGGGGAAATCGGAAGT
GCCGGCGGACAGAAAACCGCTGGCGATGCAATTGTGGGTGGTTCGCACGC
CCGCCATTTCCGGCGCGGCCTCGGATAACGTCCTCGATTACGCCCTGCCG
CCCAACACGCCCACTCCGAAGGACTACGCGCACAAGTTCCTGCCCGAGGG
CAAGGATGTGGTACCCGGAAGCTCTTACATACCGCTGCGGTTGCTGGTGA
TAAAGCGCGCAAGCTTTCTAGACC
BO11830.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15554-PA | 444 | CG15554-RA | 1..441 | 18..458 | 2205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:10:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15554-RA | 801 | CG15554-RA | 89..536 | 18..465 | 2210 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:09:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31126643..31127070 | 38..465 | 2110 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:10:00 has no hits.
BO11830.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:00 Download gff for
BO11830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15554-PA | 1..444 | 18..461 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:46:15 Download gff for
BO11830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15554-PA | 1..444 | 18..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:19:10 Download gff for
BO11830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15554-RA | 83..538 | 15..470 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:08:36 Download gff for
BO11830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15554-RA | 85..540 | 15..470 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:08:36 Download gff for
BO11830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31126233..31126257 | 15..38 | 96 | -> | Plus |
3R | 31126644..31127074 | 39..470 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:19:10 Download gff for
BO11830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26951955..26951979 | 15..38 | 96 | -> | Plus |
arm_3R | 26952366..26952796 | 39..470 | 98 | | Plus |
BO11830.complete Sequence
476 bp assembled on 2008-08-15
GenBank Submission: FJ638689
> BO11830.complete
GAAGTTATCAGTTCGACATGTACAGGACTTTTGTTTGGCTGTTAACCCTA
ATGGCAGTGGCAAGTGCCGCCACCTCGGGTCGGGACTACTTGCCGCGCCC
CCCCGCCAAAGCCTATGTCTACGGCACGCCCCCGCCCAGCACGATGGCTC
AGTTGCGACGGATAATCCAAGGTCACCTGGAGCGCTTCCAGCTGGCGGAG
CAGGCCCACTTTTCCCGCCGCGCCAATGTGCAGCTGGGGAAATCGGAAGT
GCCGGCGGACAGAAAACCGCTGGCGATGCAATTGTGGGTGGTTCGCACGC
CCGCCATTTCCGGCGCGGCCTCGGATAACGTCCTCGATTACGCCCTGCCG
CCCAACACGCCCACTCCGAAGGACTACGCGCACAAGTTCCTGCCCGAGGG
CAAGGATGTGGTACCCGGAAGCTCTTACATACCGCTGCGGTTGCTGGTGA
TAAAGCGCGCAAGCTTTCTAGACCAT
BO11830.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:40:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15554-RA | 444 | CG15554-PA | 1..441 | 18..458 | 2205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:40:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15554-RA | 801 | CG15554-RA | 89..536 | 18..465 | 2210 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:40:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31126643..31127070 | 38..465 | 2110 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:40:10 has no hits.
BO11830.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:45:13 Download gff for
BO11830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15554-RA | 83..538 | 15..470 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:58 Download gff for
BO11830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15554-RA | 85..527 | 17..460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:39 Download gff for
BO11830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15554-RA | 85..527 | 17..460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:26 Download gff for
BO11830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15554-RA | 87..529 | 17..460 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:26 Download gff for
BO11830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31126235..31126257 | 17..38 | 95 | -> | Plus |
3R | 31126644..31127063 | 39..460 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:58 Download gff for
BO11830.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26951957..26951979 | 17..38 | 95 | -> | Plus |
arm_3R | 26952366..26952785 | 39..460 | 99 | | Plus |
BO11830.pep Sequence
Translation from 17 to 476
> BO11830.pep
MYRTFVWLLTLMAVASAATSGRDYLPRPPAKAYVYGTPPPSTMAQLRRII
QGHLERFQLAEQAHFSRRANVQLGKSEVPADRKPLAMQLWVVRTPAISGA
ASDNVLDYALPPNTPTPKDYAHKFLPEGKDVVPGSSYIPLRLLVIKRASF
LDH
BO11830.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:28:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15554-PA | 147 | CG15554-PA | 1..147 | 1..147 | 764 | 100 | Plus |