Clone BO11830 Report

Search the DGRC for BO11830

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:118
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptCG15554-RA
Protein status:BO11830.pep: Imported from assembly
Sequenced Size:476

Clone Sequence Records

BO11830.3prime Sequence

474 bp (473 high quality bases) assembled on 2006-04-19

> BO11830.3prime
ATGGTCTAGAAAGCTTGCGCGCTTTATCACCAGCAACCGCAGCGGTATGT
AAGAGCTTCCGGGTACCACATCCTTGCCCTCGGGCAGGAACTTGTGCGCG
TAGTCCTTCGGAGTGGGCGTGTTGGGCGGCAGGGCGTAATCGAGGACGTT
ATCCGAGGCCGCGCCGGAAATGGCGGGCGTGCGAACCACCCACAATTGCA
TCGCCAGCGGTTTTCTGTCCGCCGGCACTTCCGATTTCCCCAGCTGCACA
TTGGCGCGGCGGGAAAAGTGGGCCTGCTCCGCCAGCTGGAAGCGCTCCAG
GTGACCTTGGATTATCCGTCGCAACTGAGCCATCGTGCTGGGCGGGGGCG
TGCCGTAGACATAGGCTTTGGCGGGGGGGCGCGGCAAGTAGTCCCGACCC
GAGGTGGCGGCACTTGCCACTGCCATTAGGGTTAACAGCCAAACAAAAGT
CCTGTACATGTCGAACTGATAACT

BO11830.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG15554-PA 444 CG15554-RA 1..441 459..19 2205 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG15554-RA 801 CG15554-RA 89..536 459..12 2210 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31126643..31127070 439..12 2110 99.5 Minus
Blast to na_te.dros performed on 2015-02-11 12:06:25 has no hits.

BO11830.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:17:59 Download gff for BO11830.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15554-PA 1..444 16..459 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:46:14 Download gff for BO11830.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15554-PA 1..444 16..459 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 23:29:44 Download gff for BO11830.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15554-RA 83..538 7..462 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:30:08 Download gff for BO11830.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15554-RA 85..540 7..462 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:30:08 Download gff for BO11830.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31126233..31126257 439..462 96 -> Minus
3R 31126644..31127074 7..438 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 23:29:44 Download gff for BO11830.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26951955..26951979 439..462 96 -> Minus
arm_3R 26952366..26952796 7..438 98   Minus

BO11830.5prime Sequence

474 bp (473 high quality bases) assembled on 2006-04-19

> BO11830.5prime
GAAGTTATCAGTTCGACATGTACAGGACTTTTGTTTGGCTGTTAACCCTA
ATGGCAGTGGCAAGTGCCGCCACCTCGGGTCGGGACTACTTGCCGCGCCC
CCCCGCCAAAGCCTATGTCTACGGCACGCCCCCGCCCAGCACGATGGCTC
AGTTGCGACGGATAATCCAAGGTCACCTGGAGCGCTTCCAGCTGGCGGAG
CAGGCCCACTTTTCCCGCCGCGCCAATGTGCAGCTGGGGAAATCGGAAGT
GCCGGCGGACAGAAAACCGCTGGCGATGCAATTGTGGGTGGTTCGCACGC
CCGCCATTTCCGGCGCGGCCTCGGATAACGTCCTCGATTACGCCCTGCCG
CCCAACACGCCCACTCCGAAGGACTACGCGCACAAGTTCCTGCCCGAGGG
CAAGGATGTGGTACCCGGAAGCTCTTACATACCGCTGCGGTTGCTGGTGA
TAAAGCGCGCAAGCTTTCTAGACC

BO11830.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG15554-PA 444 CG15554-RA 1..441 18..458 2205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:10:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG15554-RA 801 CG15554-RA 89..536 18..465 2210 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31126643..31127070 38..465 2110 99.5 Plus
Blast to na_te.dros performed on 2015-02-12 01:10:00 has no hits.

BO11830.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:00 Download gff for BO11830.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15554-PA 1..444 18..461 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:46:15 Download gff for BO11830.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15554-PA 1..444 18..461 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:19:10 Download gff for BO11830.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15554-RA 83..538 15..470 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:08:36 Download gff for BO11830.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15554-RA 85..540 15..470 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:08:36 Download gff for BO11830.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31126233..31126257 15..38 96 -> Plus
3R 31126644..31127074 39..470 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:19:10 Download gff for BO11830.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26951955..26951979 15..38 96 -> Plus
arm_3R 26952366..26952796 39..470 98   Plus

BO11830.complete Sequence

476 bp assembled on 2008-08-15

GenBank Submission: FJ638689

> BO11830.complete
GAAGTTATCAGTTCGACATGTACAGGACTTTTGTTTGGCTGTTAACCCTA
ATGGCAGTGGCAAGTGCCGCCACCTCGGGTCGGGACTACTTGCCGCGCCC
CCCCGCCAAAGCCTATGTCTACGGCACGCCCCCGCCCAGCACGATGGCTC
AGTTGCGACGGATAATCCAAGGTCACCTGGAGCGCTTCCAGCTGGCGGAG
CAGGCCCACTTTTCCCGCCGCGCCAATGTGCAGCTGGGGAAATCGGAAGT
GCCGGCGGACAGAAAACCGCTGGCGATGCAATTGTGGGTGGTTCGCACGC
CCGCCATTTCCGGCGCGGCCTCGGATAACGTCCTCGATTACGCCCTGCCG
CCCAACACGCCCACTCCGAAGGACTACGCGCACAAGTTCCTGCCCGAGGG
CAAGGATGTGGTACCCGGAAGCTCTTACATACCGCTGCGGTTGCTGGTGA
TAAAGCGCGCAAGCTTTCTAGACCAT

BO11830.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG15554-RA 444 CG15554-PA 1..441 18..458 2205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG15554-RA 801 CG15554-RA 89..536 18..465 2210 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31126643..31127070 38..465 2110 99.5 Plus
Blast to na_te.dros performed on 2014-11-27 15:40:10 has no hits.

BO11830.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:45:13 Download gff for BO11830.complete
Subject Subject Range Query Range Percent Splice Strand
CG15554-RA 83..538 15..470 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:58 Download gff for BO11830.complete
Subject Subject Range Query Range Percent Splice Strand
CG15554-RA 85..527 17..460 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:39 Download gff for BO11830.complete
Subject Subject Range Query Range Percent Splice Strand
CG15554-RA 85..527 17..460 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:26 Download gff for BO11830.complete
Subject Subject Range Query Range Percent Splice Strand
CG15554-RA 87..529 17..460 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:26 Download gff for BO11830.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31126235..31126257 17..38 95 -> Plus
3R 31126644..31127063 39..460 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:58 Download gff for BO11830.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26951957..26951979 17..38 95 -> Plus
arm_3R 26952366..26952785 39..460 99   Plus

BO11830.pep Sequence

Translation from 17 to 476

> BO11830.pep
MYRTFVWLLTLMAVASAATSGRDYLPRPPAKAYVYGTPPPSTMAQLRRII
QGHLERFQLAEQAHFSRRANVQLGKSEVPADRKPLAMQLWVVRTPAISGA
ASDNVLDYALPPNTPTPKDYAHKFLPEGKDVVPGSSYIPLRLLVIKRASF
LDH

BO11830.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:28:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG15554-PA 147 CG15554-PA 1..147 1..147 764 100 Plus