Clone BO11833 Report

Search the DGRC for BO11833

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:118
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptSerT-RA
Protein status:BO11833.pep:
Sequenced Size:1900

Clone Sequence Records

BO11833.3prime Sequence

884 bp (819 high quality bases) assembled on 2006-04-19

> BO11833.3prime
ATGGTCTAGAAAGCTTGCCACCGAGGTGCCCTGTTGGCCGGGCACCACCG
ATCCGCAGTTGTCCTCCGGCTGGAAGGACTCCTGCAGCCTCTGGCGGCAG
CCGCCTTTCGAGGCGAAGAAGAACTTGTAGATAATGTACATGGGGATGCA
GAGCACCGACGAGCAGGTGACCGCCCAGCCCACCTGGTAGCTCCAGTCCG
GGTAGTAGTACTCCTCGCCGAGCATCTCCTTGTAGCCCATGATGGAGAAA
ATGAATATGGTCAGCAGGAACACAGGGCTGATGTACGTCCAGCAGATCCG
CCAGAATAAGCCTGGCTTGCTGCCCAGCATCTGTTCCACATCCGAGCTGA
AGCGGTCCACTCCGTAGAACCAAAAGACTCCGGCTGCCTCCACGAAGACC
ACAAAGAGGATGGCCAACCCGGGTCCGTAGACATTCAGGAAGTTGACCAG
CACCACGCCACCGTAGGTCATCGTGGGAAGGGCGCACAGGAAGATGAAAG
CCAGGAGCAGCAGGACGAACAGCTCCCTGCGCCTGCCAATCACTCGCGGA
TACTCGTCGCACAGCGCTGTTATCATCGCCTCCAATCCGCCAAAGGTGCT
GTCCAGTCCCAGGGTAATCAGCATCAGGAAGAAGATGATGCTCCAGAACA
CCGAGCCACTCATCGTGGCTATGGCCTCCGGGTAAACGATGAACACCAGC
CCCGGACCCTCCAGGCCCACCTTGTCGATGGAGGTCTTTTGGACGTAGGC
CATGTACCCCAAAACGGAGAAGATGACAAAACCGGCCAGGAAACTGGTCA
AGCAGTTGATGCTGCTGGTGATGAGAGCATCGCGATAGCAGTTGTTGTTG
AACTTGTTGTAGCTGGACAGGGCCAGCAGGGTTC

BO11833.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG4545-PA 1869 SerT-RA 1001..1866 884..19 4305 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:21:08
Subject Length Description Subject Range Query Range Score Percent Strand
SerT-RB 3725 CG4545-RB 2000..2865 884..19 4315 99.9 Minus
SerT-RA 3183 CG4545-RA 1458..2323 884..19 4315 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:21:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24406524..24406820 462..758 1485 100 Plus
2R 25286936 2R 24405455..24405698 19..262 1220 100 Plus
2R 25286936 2R 24405757..24405957 262..462 1005 100 Plus
2R 25286936 2R 24406931..24407059 756..884 630 99.2 Plus
Blast to na_te.dros performed 2015-02-10 20:21:06
Subject Length Description Subject Range Query Range Score Percent Strand
Doc3-element 4740 Doc3-element DOC3 4740bp 519..561 876..832 112 75.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2481..2540 865..806 111 65 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2439..2510 865..794 108 61.1 Minus

BO11833.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:03 Download gff for BO11833.3prime
Subject Subject Range Query Range Percent Splice Strand
SerT-PA 1001..1869 16..884 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:46:20 Download gff for BO11833.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4545-PA 1001..1869 16..884 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:37:54 Download gff for BO11833.3prime
Subject Subject Range Query Range Percent Splice Strand
SerT-RA 1458..2323 19..884 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:13:57 Download gff for BO11833.3prime
Subject Subject Range Query Range Percent Splice Strand
SerT-RA 1458..2323 19..884 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:13:57 Download gff for BO11833.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24406933..24407059 758..884 99   Plus
2R 24405757..24405957 262..462 100 <- Plus
2R 24406525..24406819 463..757 100 <- Plus
2R 24405455..24405697 19..261 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:37:54 Download gff for BO11833.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20292978..20293220 19..261 100 <- Plus
arm_2R 20293280..20293480 262..462 100 <- Plus
arm_2R 20294048..20294342 463..757 100 <- Plus
arm_2R 20294456..20294582 758..884 99   Plus

BO11833.5prime Sequence

608 bp (548 high quality bases) assembled on 2006-04-19

> BO11833.5prime
GAAGTTATCAGTCGACATGGACCGCAGCGGGAGCTCCGATTTCGCAGGAG
CAGCTGCCACGACGGGCCGCTCGAATCCCGCGCCCTGGAGCGACGACAAA
GAGTCGCCAAACAACGAGGACGACTCCAACGAGGACGATGGCGACCACAC
GACGCCCGCCAAGGTCACCGATCCACTGGCCCCCAAGCTGGCCAACAACG
AGCGCATTCTGGTGGTCTCCGTGACGGAGAGGACTCGCGAGACCTGGGGA
CAGAAGGCGGAGTTCCTCCTGGCCGTGATTGGGTTCGCAGTGGATCTGGG
CAATGTGTGGCGCTTCCCGTACATCTGCTATCAGAACGGAGGCGGCGCCT
TCCTGGTGCCCTACTGCCTCTTCCTCATCTTCGGTGGACTGCCCCTGTTC
TACATGGAGCTGGCGCTGGGCCAGTTCCACCGATGTGGTTGCCTCAGCAT
CTGGAAGCGCATCTGTCCGGCCCTAAAAGGCGTGGGCTATGCGATCTGCC
TAATCGACATTTATATGGGCATGTACTACAACACGATTATCGGCTGGGCG
GTATACTACCTCTTCGCCTCGTTCACATCCAAGTTGCCGTGGACGTCGTG
CGATAATC

BO11833.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG4545-PA 1869 SerT-RA 1..592 17..608 2960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:17:02
Subject Length Description Subject Range Query Range Score Percent Strand
SerT-RB 3725 CG4545-RB 1000..1591 17..608 2960 100 Plus
SerT-RA 3183 CG4545-RA 458..1049 17..608 2960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:17:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24408962..24409241 480..201 1400 100 Minus
2R 25286936 2R 24409387..24409572 202..17 930 100 Minus
2R 25286936 2R 24407524..24407654 608..478 655 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:17:02 has no hits.

BO11833.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:04 Download gff for BO11833.5prime
Subject Subject Range Query Range Percent Splice Strand
SerT-PA 1..592 17..608 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:46:21 Download gff for BO11833.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4545-PA 1..592 17..608 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:19:50 Download gff for BO11833.5prime
Subject Subject Range Query Range Percent Splice Strand
SerT-RA 452..1049 9..608 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:09:30 Download gff for BO11833.5prime
Subject Subject Range Query Range Percent Splice Strand
SerT-RA 452..1049 9..608 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:09:30 Download gff for BO11833.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24407524..24407652 480..608 100 <- Minus
2R 24408963..24409239 203..479 100 <- Minus
2R 24409387..24409578 9..202 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:19:50 Download gff for BO11833.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20295047..20295175 480..608 100 <- Minus
arm_2R 20296486..20296762 203..479 100 <- Minus
arm_2R 20296910..20297101 9..202 97   Minus

BO11833.complete Sequence

1900 bp assembled on 2008-01-17

GenBank Submission: FJ632213

> BO11833.complete
GAAGTTATCAGTCGACATGGACCGCAGCGGGAGCTCCGATTTCGCAGGAG
CAGCTGCCACGACGGGCCGCTCGAATCCCGCGCCCTGGAGCGACGACAAA
GAGTCGCCAAACAACGAGGACGACTCCAACGAGGACGATGGCGACCACAC
GACGCCCGCCAAGGTCACCGATCCACTGGCCCCCAAGCTGGCCAACAACG
AGCGCATTCTGGTGGTCTCCGTGACGGAGAGGACTCGCGAGACCTGGGGA
CAGAAGGCGGAGTTCCTCCTGGCCGTGATTGGGTTCGCAGTGGATCTGGG
CAATGTGTGGCGCTTCCCGTACATCTGCTATCAGAACGGAGGCGGCGCCT
TCCTGGTGCCCTACTGCCTCTTCCTCATCTTCGGTGGACTGCCCCTGTTC
TACATGGAGCTGGCGCTGGGCCAGTTCCACCGATGTGGTTGCCTCAGCAT
CTGGAAGCGCATCTGTCCGGCCCTAAAAGGCGTGGGCTATGCGATCTGCC
TAATCGACATTTATATGGGCATGTACTACAACACGATTATCGGCTGGGCG
GTATACTACCTCTTCGCCTCGTTCACATCCAAGTTGCCGTGGACGTCGTG
CGATAATCCCTGGAACACTGAGAACTGCATGCAGGTGACCAGTGAGAACT
TCACGGAACTGGCCACGTCGCCGGCCAAGGAGTTCTTTGAGCGAAAGGTT
TTGGAGAGCTACAAGGGCAACGGGCTGGACTTCATGGGTCCGGTGAAGCC
CACGCTGGCACTCTGCGTCTTCGGGGTCTTTGTCCTGGTCTACTTCTCCC
TGTGGAAGGGAGTGCGCAGTGCCGGAAAGGTGGTGTGGGTCACCGCTCTG
GCTCCTTATGTGGTGCTAATCATCCTGCTGGTTAGAGGAGTTTCCCTGCC
CGGCGCGGACGAGGGCATCAAGTACTACCTAACCCCGGAGTGGCACAAAC
TGAAGAACTCCAAAGTCTGGATCGACGCCGCATCCCAGATTTTCTTCTCC
CTTGGCCCCGGATTCGGAACCCTGCTGGCCCTGTCCAGCTACAACAAGTT
CAACAACAACTGCTATCGCGATGCTCTCATCACCAGCAGCATCAACTGCT
TGACCAGTTTCCTGGCCGGCTTTGTCATCTTCTCCGTTTTGGGGTACATG
GCCTACGTCCAAAAGACCTCCATCGACAAGGTGGGCCTGGAGGGTCCGGG
GCTGGTGTTCATCGTTTACCCGGAGGCCATAGCCACGATGAGTGGCTCGG
TGTTCTGGAGCATCATCTTCTTCCTGATGCTGATTACCCTGGGACTGGAC
AGCACCTTTGGCGGATTGGAGGCGATGATAACAGCGCTGTGCGACGAGTA
TCCGCGAGTGATTGGCAGGCGCAGGGAGCTGTTCGTCCTGCTGCTCCTGG
CTTTCATCTTCCTGTGCGCCCTTCCCACGATGACCTACGGTGGCGTGGTG
CTGGTCAACTTCCTGAATGTCTACGGACCCGGGTTGGCCATCCTCTTTGT
GGTCTTCGTGGAGGCAGCCGGAGTCTTTTGGTTCTACGGAGTGGACCGCT
TCAGCTCGGATGTGGAACAGATGCTGGGCAGCAAGCCAGGCTTATTCTGG
CGGATCTGCTGGACGTACATCAGCCCTGTGTTCCTGCTGACCATATTCAT
TTTCTCCATCATGGGCTACAAGGAGATGCTCGGCGAGGAGTACTACTACC
CGGACTGGAGCTACCAGGTGGGCTGGGCGGTCACCTGCTCGTCGGTGCTC
TGCATCCCCATGTACATTATCTACAAGTTCTTCTTCGCCTCGAAAGGCGG
CTGCCGCCAGAGGCTGCAGGAGTCCTTCCAGCCGGAGGACAACTGCGGAT
CGGTGGTGCCCGGCCAACAGGGCACCTCGGTGGCAAGCTTTCTAGACCAT

BO11833.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:45:50
Subject Length Description Subject Range Query Range Score Percent Strand
SerT-RB 1869 CG4545-PB 1..1866 17..1882 9330 100 Plus
SerT-RA 1869 CG4545-PA 1..1866 17..1882 9330 100 Plus
ine-RF 2832 CG15444-PF 1729..1838 950..1059 190 78.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:45:52
Subject Length Description Subject Range Query Range Score Percent Strand
SerT-RB 3725 CG4545-RB 1000..2865 17..1882 9330 100 Plus
SerT-RA 3183 CG4545-RA 458..2323 17..1882 9330 100 Plus
ine-RF 3436 CG15444-RF 2229..2338 950..1059 190 78.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:45:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24406931..24407385 1145..691 2275 100 Minus
2R 25286936 2R 24406524..24406820 1439..1143 1485 100 Minus
2R 25286936 2R 24408962..24409241 480..201 1400 100 Minus
2R 25286936 2R 24405455..24405698 1882..1639 1220 100 Minus
2R 25286936 2R 24407441..24407654 691..478 1070 100 Minus
2R 25286936 2R 24405757..24405957 1639..1439 1005 100 Minus
2R 25286936 2R 24409387..24409572 202..17 930 100 Minus
2L 23513712 2L 4469256..4469365 1059..950 190 78.2 Minus
Blast to na_te.dros performed on 2014-11-27 13:45:49 has no hits.

BO11833.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:13 Download gff for BO11833.complete
Subject Subject Range Query Range Percent Splice Strand
SerT-RA 1..1869 17..1885 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:40 Download gff for BO11833.complete
Subject Subject Range Query Range Percent Splice Strand
SerT-RA 455..2320 17..1884 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:13 Download gff for BO11833.complete
Subject Subject Range Query Range Percent Splice Strand
SerT-RA 458..2323 17..1884 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:14 Download gff for BO11833.complete
Subject Subject Range Query Range Percent Splice Strand
SerT-RA 449..2320 9..1882 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:22 Download gff for BO11833.complete
Subject Subject Range Query Range Percent Splice Strand
SerT-RA 458..2323 17..1884 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:22 Download gff for BO11833.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24405451..24405697 1640..1884 99 <- Minus
2R 24405757..24405957 1439..1639 100 <- Minus
2R 24406525..24406819 1144..1438 100 <- Minus
2R 24406933..24407385 691..1143 100 <- Minus
2R 24407442..24407652 480..690 100 <- Minus
2R 24408963..24409239 203..479 100 <- Minus
2R 24409387..24409572 17..202 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:13 Download gff for BO11833.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20292974..20293220 1640..1884 99 <- Minus
arm_2R 20293280..20293480 1439..1639 100 <- Minus
arm_2R 20294048..20294342 1144..1438 100 <- Minus
arm_2R 20294456..20294908 691..1143 100 <- Minus
arm_2R 20294965..20295175 480..690 100 <- Minus
arm_2R 20296486..20296762 203..479 100 <- Minus
arm_2R 20296910..20297095 17..202 100   Minus

BO11833.pep Sequence

Translation from 16 to 1900

> BO11833.pep
MDRSGSSDFAGAAATTGRSNPAPWSDDKESPNNEDDSNEDDGDHTTPAKV
TDPLAPKLANNERILVVSVTERTRETWGQKAEFLLAVIGFAVDLGNVWRF
PYICYQNGGGAFLVPYCLFLIFGGLPLFYMELALGQFHRCGCLSIWKRIC
PALKGVGYAICLIDIYMGMYYNTIIGWAVYYLFASFTSKLPWTSCDNPWN
TENCMQVTSENFTELATSPAKEFFERKVLESYKGNGLDFMGPVKPTLALC
VFGVFVLVYFSLWKGVRSAGKVVWVTALAPYVVLIILLVRGVSLPGADEG
IKYYLTPEWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFNNNCY
RDALITSSINCLTSFLAGFVIFSVLGYMAYVQKTSIDKVGLEGPGLVFIV
YPEAIATMSGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRVIG
RRRELFVLLLLAFIFLCALPTMTYGGVVLVNFLNVYGPGLAILFVVFVEA
AGVFWFYGVDRFSSDVEQMLGSKPGLFWRICWTYISPVFLLTIFIFSIMG
YKEMLGEEYYYPDWSYQVGWAVTCSSVLCIPMYIIYKFFFASKGGCRQRL
QESFQPEDNCGSVVPGQQGTSVASFLDH

BO11833.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:27:55
Subject Length Description Subject Range Query Range Score Percent Strand
SerT-PB 622 CG4545-PB 1..622 1..622 3327 100 Plus
SerT-PA 622 CG4545-PA 1..622 1..622 3327 100 Plus
DAT-PA 631 CG8380-PA 27..589 74..599 1551 50.8 Plus
DAT-PB 644 CG8380-PB 27..589 74..599 1551 50.8 Plus
CG1732-PA 636 CG1732-PA 29..592 44..586 1316 43.3 Plus