Clone Sequence Records
BO11833.3prime Sequence
884 bp (819 high quality bases) assembled on 2006-04-19
> BO11833.3prime
ATGGTCTAGAAAGCTTGCCACCGAGGTGCCCTGTTGGCCGGGCACCACCG
ATCCGCAGTTGTCCTCCGGCTGGAAGGACTCCTGCAGCCTCTGGCGGCAG
CCGCCTTTCGAGGCGAAGAAGAACTTGTAGATAATGTACATGGGGATGCA
GAGCACCGACGAGCAGGTGACCGCCCAGCCCACCTGGTAGCTCCAGTCCG
GGTAGTAGTACTCCTCGCCGAGCATCTCCTTGTAGCCCATGATGGAGAAA
ATGAATATGGTCAGCAGGAACACAGGGCTGATGTACGTCCAGCAGATCCG
CCAGAATAAGCCTGGCTTGCTGCCCAGCATCTGTTCCACATCCGAGCTGA
AGCGGTCCACTCCGTAGAACCAAAAGACTCCGGCTGCCTCCACGAAGACC
ACAAAGAGGATGGCCAACCCGGGTCCGTAGACATTCAGGAAGTTGACCAG
CACCACGCCACCGTAGGTCATCGTGGGAAGGGCGCACAGGAAGATGAAAG
CCAGGAGCAGCAGGACGAACAGCTCCCTGCGCCTGCCAATCACTCGCGGA
TACTCGTCGCACAGCGCTGTTATCATCGCCTCCAATCCGCCAAAGGTGCT
GTCCAGTCCCAGGGTAATCAGCATCAGGAAGAAGATGATGCTCCAGAACA
CCGAGCCACTCATCGTGGCTATGGCCTCCGGGTAAACGATGAACACCAGC
CCCGGACCCTCCAGGCCCACCTTGTCGATGGAGGTCTTTTGGACGTAGGC
CATGTACCCCAAAACGGAGAAGATGACAAAACCGGCCAGGAAACTGGTCA
AGCAGTTGATGCTGCTGGTGATGAGAGCATCGCGATAGCAGTTGTTGTTG
AACTTGTTGTAGCTGGACAGGGCCAGCAGGGTTC
BO11833.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4545-PA | 1869 | SerT-RA | 1001..1866 | 884..19 | 4305 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:21:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SerT-RB | 3725 | CG4545-RB | 2000..2865 | 884..19 | 4315 | 99.9 | Minus |
SerT-RA | 3183 | CG4545-RA | 1458..2323 | 884..19 | 4315 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:21:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24406524..24406820 | 462..758 | 1485 | 100 | Plus |
2R | 25286936 | 2R | 24405455..24405698 | 19..262 | 1220 | 100 | Plus |
2R | 25286936 | 2R | 24405757..24405957 | 262..462 | 1005 | 100 | Plus |
2R | 25286936 | 2R | 24406931..24407059 | 756..884 | 630 | 99.2 | Plus |
Blast to na_te.dros performed 2015-02-10 20:21:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 519..561 | 876..832 | 112 | 75.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2481..2540 | 865..806 | 111 | 65 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2510 | 865..794 | 108 | 61.1 | Minus |
BO11833.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:03 Download gff for
BO11833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SerT-PA | 1001..1869 | 16..884 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:46:20 Download gff for
BO11833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4545-PA | 1001..1869 | 16..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:37:54 Download gff for
BO11833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SerT-RA | 1458..2323 | 19..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:13:57 Download gff for
BO11833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SerT-RA | 1458..2323 | 19..884 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:13:57 Download gff for
BO11833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24406933..24407059 | 758..884 | 99 | | Plus |
2R | 24405757..24405957 | 262..462 | 100 | <- | Plus |
2R | 24406525..24406819 | 463..757 | 100 | <- | Plus |
2R | 24405455..24405697 | 19..261 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:37:54 Download gff for
BO11833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20292978..20293220 | 19..261 | 100 | <- | Plus |
arm_2R | 20293280..20293480 | 262..462 | 100 | <- | Plus |
arm_2R | 20294048..20294342 | 463..757 | 100 | <- | Plus |
arm_2R | 20294456..20294582 | 758..884 | 99 | | Plus |
BO11833.5prime Sequence
608 bp (548 high quality bases) assembled on 2006-04-19
> BO11833.5prime
GAAGTTATCAGTCGACATGGACCGCAGCGGGAGCTCCGATTTCGCAGGAG
CAGCTGCCACGACGGGCCGCTCGAATCCCGCGCCCTGGAGCGACGACAAA
GAGTCGCCAAACAACGAGGACGACTCCAACGAGGACGATGGCGACCACAC
GACGCCCGCCAAGGTCACCGATCCACTGGCCCCCAAGCTGGCCAACAACG
AGCGCATTCTGGTGGTCTCCGTGACGGAGAGGACTCGCGAGACCTGGGGA
CAGAAGGCGGAGTTCCTCCTGGCCGTGATTGGGTTCGCAGTGGATCTGGG
CAATGTGTGGCGCTTCCCGTACATCTGCTATCAGAACGGAGGCGGCGCCT
TCCTGGTGCCCTACTGCCTCTTCCTCATCTTCGGTGGACTGCCCCTGTTC
TACATGGAGCTGGCGCTGGGCCAGTTCCACCGATGTGGTTGCCTCAGCAT
CTGGAAGCGCATCTGTCCGGCCCTAAAAGGCGTGGGCTATGCGATCTGCC
TAATCGACATTTATATGGGCATGTACTACAACACGATTATCGGCTGGGCG
GTATACTACCTCTTCGCCTCGTTCACATCCAAGTTGCCGTGGACGTCGTG
CGATAATC
BO11833.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4545-PA | 1869 | SerT-RA | 1..592 | 17..608 | 2960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:17:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SerT-RB | 3725 | CG4545-RB | 1000..1591 | 17..608 | 2960 | 100 | Plus |
SerT-RA | 3183 | CG4545-RA | 458..1049 | 17..608 | 2960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:17:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24408962..24409241 | 480..201 | 1400 | 100 | Minus |
2R | 25286936 | 2R | 24409387..24409572 | 202..17 | 930 | 100 | Minus |
2R | 25286936 | 2R | 24407524..24407654 | 608..478 | 655 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:17:02 has no hits.
BO11833.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:04 Download gff for
BO11833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SerT-PA | 1..592 | 17..608 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:46:21 Download gff for
BO11833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4545-PA | 1..592 | 17..608 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:19:50 Download gff for
BO11833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SerT-RA | 452..1049 | 9..608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:09:30 Download gff for
BO11833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SerT-RA | 452..1049 | 9..608 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:09:30 Download gff for
BO11833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24407524..24407652 | 480..608 | 100 | <- | Minus |
2R | 24408963..24409239 | 203..479 | 100 | <- | Minus |
2R | 24409387..24409578 | 9..202 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:19:50 Download gff for
BO11833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20295047..20295175 | 480..608 | 100 | <- | Minus |
arm_2R | 20296486..20296762 | 203..479 | 100 | <- | Minus |
arm_2R | 20296910..20297101 | 9..202 | 97 | | Minus |
BO11833.complete Sequence
1900 bp assembled on 2008-01-17
GenBank Submission: FJ632213
> BO11833.complete
GAAGTTATCAGTCGACATGGACCGCAGCGGGAGCTCCGATTTCGCAGGAG
CAGCTGCCACGACGGGCCGCTCGAATCCCGCGCCCTGGAGCGACGACAAA
GAGTCGCCAAACAACGAGGACGACTCCAACGAGGACGATGGCGACCACAC
GACGCCCGCCAAGGTCACCGATCCACTGGCCCCCAAGCTGGCCAACAACG
AGCGCATTCTGGTGGTCTCCGTGACGGAGAGGACTCGCGAGACCTGGGGA
CAGAAGGCGGAGTTCCTCCTGGCCGTGATTGGGTTCGCAGTGGATCTGGG
CAATGTGTGGCGCTTCCCGTACATCTGCTATCAGAACGGAGGCGGCGCCT
TCCTGGTGCCCTACTGCCTCTTCCTCATCTTCGGTGGACTGCCCCTGTTC
TACATGGAGCTGGCGCTGGGCCAGTTCCACCGATGTGGTTGCCTCAGCAT
CTGGAAGCGCATCTGTCCGGCCCTAAAAGGCGTGGGCTATGCGATCTGCC
TAATCGACATTTATATGGGCATGTACTACAACACGATTATCGGCTGGGCG
GTATACTACCTCTTCGCCTCGTTCACATCCAAGTTGCCGTGGACGTCGTG
CGATAATCCCTGGAACACTGAGAACTGCATGCAGGTGACCAGTGAGAACT
TCACGGAACTGGCCACGTCGCCGGCCAAGGAGTTCTTTGAGCGAAAGGTT
TTGGAGAGCTACAAGGGCAACGGGCTGGACTTCATGGGTCCGGTGAAGCC
CACGCTGGCACTCTGCGTCTTCGGGGTCTTTGTCCTGGTCTACTTCTCCC
TGTGGAAGGGAGTGCGCAGTGCCGGAAAGGTGGTGTGGGTCACCGCTCTG
GCTCCTTATGTGGTGCTAATCATCCTGCTGGTTAGAGGAGTTTCCCTGCC
CGGCGCGGACGAGGGCATCAAGTACTACCTAACCCCGGAGTGGCACAAAC
TGAAGAACTCCAAAGTCTGGATCGACGCCGCATCCCAGATTTTCTTCTCC
CTTGGCCCCGGATTCGGAACCCTGCTGGCCCTGTCCAGCTACAACAAGTT
CAACAACAACTGCTATCGCGATGCTCTCATCACCAGCAGCATCAACTGCT
TGACCAGTTTCCTGGCCGGCTTTGTCATCTTCTCCGTTTTGGGGTACATG
GCCTACGTCCAAAAGACCTCCATCGACAAGGTGGGCCTGGAGGGTCCGGG
GCTGGTGTTCATCGTTTACCCGGAGGCCATAGCCACGATGAGTGGCTCGG
TGTTCTGGAGCATCATCTTCTTCCTGATGCTGATTACCCTGGGACTGGAC
AGCACCTTTGGCGGATTGGAGGCGATGATAACAGCGCTGTGCGACGAGTA
TCCGCGAGTGATTGGCAGGCGCAGGGAGCTGTTCGTCCTGCTGCTCCTGG
CTTTCATCTTCCTGTGCGCCCTTCCCACGATGACCTACGGTGGCGTGGTG
CTGGTCAACTTCCTGAATGTCTACGGACCCGGGTTGGCCATCCTCTTTGT
GGTCTTCGTGGAGGCAGCCGGAGTCTTTTGGTTCTACGGAGTGGACCGCT
TCAGCTCGGATGTGGAACAGATGCTGGGCAGCAAGCCAGGCTTATTCTGG
CGGATCTGCTGGACGTACATCAGCCCTGTGTTCCTGCTGACCATATTCAT
TTTCTCCATCATGGGCTACAAGGAGATGCTCGGCGAGGAGTACTACTACC
CGGACTGGAGCTACCAGGTGGGCTGGGCGGTCACCTGCTCGTCGGTGCTC
TGCATCCCCATGTACATTATCTACAAGTTCTTCTTCGCCTCGAAAGGCGG
CTGCCGCCAGAGGCTGCAGGAGTCCTTCCAGCCGGAGGACAACTGCGGAT
CGGTGGTGCCCGGCCAACAGGGCACCTCGGTGGCAAGCTTTCTAGACCAT
BO11833.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:45:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SerT-RB | 1869 | CG4545-PB | 1..1866 | 17..1882 | 9330 | 100 | Plus |
SerT-RA | 1869 | CG4545-PA | 1..1866 | 17..1882 | 9330 | 100 | Plus |
ine-RF | 2832 | CG15444-PF | 1729..1838 | 950..1059 | 190 | 78.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:45:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SerT-RB | 3725 | CG4545-RB | 1000..2865 | 17..1882 | 9330 | 100 | Plus |
SerT-RA | 3183 | CG4545-RA | 458..2323 | 17..1882 | 9330 | 100 | Plus |
ine-RF | 3436 | CG15444-RF | 2229..2338 | 950..1059 | 190 | 78.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:45:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24406931..24407385 | 1145..691 | 2275 | 100 | Minus |
2R | 25286936 | 2R | 24406524..24406820 | 1439..1143 | 1485 | 100 | Minus |
2R | 25286936 | 2R | 24408962..24409241 | 480..201 | 1400 | 100 | Minus |
2R | 25286936 | 2R | 24405455..24405698 | 1882..1639 | 1220 | 100 | Minus |
2R | 25286936 | 2R | 24407441..24407654 | 691..478 | 1070 | 100 | Minus |
2R | 25286936 | 2R | 24405757..24405957 | 1639..1439 | 1005 | 100 | Minus |
2R | 25286936 | 2R | 24409387..24409572 | 202..17 | 930 | 100 | Minus |
2L | 23513712 | 2L | 4469256..4469365 | 1059..950 | 190 | 78.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:45:49 has no hits.
BO11833.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:13 Download gff for
BO11833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SerT-RA | 1..1869 | 17..1885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:40 Download gff for
BO11833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SerT-RA | 455..2320 | 17..1884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:13 Download gff for
BO11833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SerT-RA | 458..2323 | 17..1884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:14 Download gff for
BO11833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SerT-RA | 449..2320 | 9..1882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:22 Download gff for
BO11833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SerT-RA | 458..2323 | 17..1884 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:22 Download gff for
BO11833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24405451..24405697 | 1640..1884 | 99 | <- | Minus |
2R | 24405757..24405957 | 1439..1639 | 100 | <- | Minus |
2R | 24406525..24406819 | 1144..1438 | 100 | <- | Minus |
2R | 24406933..24407385 | 691..1143 | 100 | <- | Minus |
2R | 24407442..24407652 | 480..690 | 100 | <- | Minus |
2R | 24408963..24409239 | 203..479 | 100 | <- | Minus |
2R | 24409387..24409572 | 17..202 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:13 Download gff for
BO11833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20292974..20293220 | 1640..1884 | 99 | <- | Minus |
arm_2R | 20293280..20293480 | 1439..1639 | 100 | <- | Minus |
arm_2R | 20294048..20294342 | 1144..1438 | 100 | <- | Minus |
arm_2R | 20294456..20294908 | 691..1143 | 100 | <- | Minus |
arm_2R | 20294965..20295175 | 480..690 | 100 | <- | Minus |
arm_2R | 20296486..20296762 | 203..479 | 100 | <- | Minus |
arm_2R | 20296910..20297095 | 17..202 | 100 | | Minus |
BO11833.pep Sequence
Translation from 16 to 1900
> BO11833.pep
MDRSGSSDFAGAAATTGRSNPAPWSDDKESPNNEDDSNEDDGDHTTPAKV
TDPLAPKLANNERILVVSVTERTRETWGQKAEFLLAVIGFAVDLGNVWRF
PYICYQNGGGAFLVPYCLFLIFGGLPLFYMELALGQFHRCGCLSIWKRIC
PALKGVGYAICLIDIYMGMYYNTIIGWAVYYLFASFTSKLPWTSCDNPWN
TENCMQVTSENFTELATSPAKEFFERKVLESYKGNGLDFMGPVKPTLALC
VFGVFVLVYFSLWKGVRSAGKVVWVTALAPYVVLIILLVRGVSLPGADEG
IKYYLTPEWHKLKNSKVWIDAASQIFFSLGPGFGTLLALSSYNKFNNNCY
RDALITSSINCLTSFLAGFVIFSVLGYMAYVQKTSIDKVGLEGPGLVFIV
YPEAIATMSGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCDEYPRVIG
RRRELFVLLLLAFIFLCALPTMTYGGVVLVNFLNVYGPGLAILFVVFVEA
AGVFWFYGVDRFSSDVEQMLGSKPGLFWRICWTYISPVFLLTIFIFSIMG
YKEMLGEEYYYPDWSYQVGWAVTCSSVLCIPMYIIYKFFFASKGGCRQRL
QESFQPEDNCGSVVPGQQGTSVASFLDH
BO11833.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:27:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SerT-PB | 622 | CG4545-PB | 1..622 | 1..622 | 3327 | 100 | Plus |
SerT-PA | 622 | CG4545-PA | 1..622 | 1..622 | 3327 | 100 | Plus |
DAT-PA | 631 | CG8380-PA | 27..589 | 74..599 | 1551 | 50.8 | Plus |
DAT-PB | 644 | CG8380-PB | 27..589 | 74..599 | 1551 | 50.8 | Plus |
CG1732-PA | 636 | CG1732-PA | 29..592 | 44..586 | 1316 | 43.3 | Plus |