Clone Sequence Records
BO11835.3prime Sequence
605 bp (604 high quality bases) assembled on 2006-04-19
> BO11835.3prime
ATGGTCTAGAAAGCTTGCGAACTTAAAGTCCTTAATGGCCTGCGGCAGAT
CAGGTAGCTTGATGTCTTTAATCTGTTGCGGAATGTTCATACTCTTCACG
GCGCTCACAGCTCGGGCAGGTGCAGCCGAGATGCCCGCTTCCTGCTTGAC
GATCTTGTTCTGCTCCTCGATCCTGGCCATTATGTCGTTCATATTTGTCT
GCAGGACCATTCCGCCCATTACCAGTTCTGAGAGGATGTGGTGGACGGCA
TCGGCGTGGAATATCAGGTCCAGCTCACACACGTTTTCGAAGCACTTGTC
GAGGGTTTCCACGAACACCTGAATCAGGTCCAGGATTCCCAGTTCGCTCT
CCGAGGAGTCCACGCAGAAAACGAAGTACAGCGTGGCATAGTGTCTGTAG
ATGAGTTTGTAATCCGATCCGCCAATCAAACTTCCGCCCTCCAGAAAGTT
GCAAACATTATCGTCCCGCTTGGACACCAATTGGAAAGTCTCTTTGATTA
TTTGTTGCTGCAGGCTTTCATCGAAATACTGATAGAACTTCGATAGCCGC
GGCTTCCCGTGATTGTTAAAAACGAGAATGGCTTTTATCATGTCGACTGA
TAACT
BO11835.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3029-PA | 576 | or-RA | 1..573 | 591..19 | 2865 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:04:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
or-RA | 823 | CG3029-RA | 75..654 | 598..19 | 2870 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:04:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23968562..23968774 | 231..19 | 1065 | 100 | Minus |
2R | 25286936 | 2R | 23968304..23968508 | 432..228 | 1025 | 100 | Minus |
2R | 25286936 | 2R | 23968153..23968244 | 522..431 | 460 | 100 | Minus |
2R | 25286936 | 2R | 23968013..23968089 | 598..522 | 355 | 97.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:04:04 has no hits.
BO11835.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:18:07 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:46:27 Download gff for
BO11835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3029-PA | 1..576 | 16..591 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:25:10 Download gff for
BO11835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
or-RA | 70..660 | 15..603 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:57:29 Download gff for
BO11835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
or-RA | 70..660 | 15..603 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:57:29 Download gff for
BO11835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23968008..23968088 | 523..603 | 95 | -> | Minus |
2R | 23968153..23968244 | 431..522 | 100 | -> | Minus |
2R | 23968306..23968508 | 228..430 | 100 | -> | Minus |
2R | 23968566..23968780 | 15..227 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:25:10 Download gff for
BO11835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19855531..19855611 | 523..603 | 95 | -> | Minus |
arm_2R | 19855676..19855767 | 431..522 | 100 | -> | Minus |
arm_2R | 19855829..19856031 | 228..430 | 100 | -> | Minus |
arm_2R | 19856089..19856303 | 15..227 | 99 | | Minus |
BO11835.5prime Sequence
605 bp (604 high quality bases) assembled on 2006-04-19
> BO11835.5prime
GAAGTTATCAGTCGACATGATAAAAGCCATTCTCGTTTTTAACAATCACG
GGAAGCCGCGGCTATCGAAGTTCTATCAGTATTTCGATGAAAGCCTGCAG
CAACAAATAATCAAAGAGACTTTCCAATTGGTGTCCAAGCGGGACGATAA
TGTTTGCAACTTTCTGGAGGGCGGAAGTTTGATTGGCGGATCGGATTACA
AACTCATCTACAGACACTATGCCACGCTGTACTTCGTTTTCTGCGTGGAC
TCCTCGGAGAGCGAACTGGGAATCCTGGACCTGATTCAGGTGTTCGTGGA
AACCCTCGACAAGTGCTTCGAAAACGTGTGTGAGCTGGACCTGATATTCC
ACGCCGATGCCGTCCACCACATCCTCTCAGAACTGGTAATGGGCGGAATG
GTCCTGCAGACAAATATGAACGACATAATGGCCAGGATCGAGGAGCAGAA
CAAGATCGTCAAGCAGGAAGCGGGCATCTCGGCTGCACCTGCCCGAGCTG
TGAGCGCCGTGAAGAGTATGAACATTCCGCAACAGATTAAAGACATCAAG
CTACCTGATCTGCCGCAGGCCATTAAGGACTTTAAGTTCGCAAGCTTTCT
AGACC
BO11835.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3029-PA | 576 | or-RA | 1..573 | 17..589 | 2865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:34:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
or-RA | 823 | CG3029-RA | 75..654 | 10..589 | 2870 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:34:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23968562..23968774 | 377..589 | 1065 | 100 | Plus |
2R | 25286936 | 2R | 23968304..23968508 | 176..380 | 1025 | 100 | Plus |
2R | 25286936 | 2R | 23968153..23968244 | 86..177 | 460 | 100 | Plus |
2R | 25286936 | 2R | 23968013..23968089 | 10..86 | 355 | 97.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:34:50 has no hits.
BO11835.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:18:08 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:46:28 Download gff for
BO11835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3029-PA | 1..576 | 17..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 03:07:18 Download gff for
BO11835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
or-RA | 70..660 | 5..593 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:36:22 Download gff for
BO11835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
or-RA | 70..660 | 5..593 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:36:22 Download gff for
BO11835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23968008..23968088 | 5..85 | 95 | -> | Plus |
2R | 23968153..23968244 | 86..177 | 100 | -> | Plus |
2R | 23968306..23968508 | 178..380 | 100 | -> | Plus |
2R | 23968566..23968780 | 381..593 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 03:07:18 Download gff for
BO11835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19855531..19855611 | 5..85 | 95 | -> | Plus |
arm_2R | 19855676..19855767 | 86..177 | 100 | -> | Plus |
arm_2R | 19855829..19856031 | 178..380 | 100 | -> | Plus |
arm_2R | 19856089..19856303 | 381..593 | 99 | | Plus |
BO11835.complete Sequence
607 bp assembled on 2006-10-11
GenBank Submission: FJ632214
> BO11835.complete
GAAGTTATCAGTCGACATGATAAAAGCCATTCTCGTTTTTAACAATCACG
GGAAGCCGCGGCTATCGAAGTTCTATCAGTATTTCGATGAAAGCCTGCAG
CAACAAATAATCAAAGAGACTTTCCAATTGGTGTCCAAGCGGGACGATAA
TGTTTGCAACTTTCTGGAGGGCGGAAGTTTGATTGGCGGATCGGATTACA
AACTCATCTACAGACACTATGCCACGCTGTACTTCGTTTTCTGCGTGGAC
TCCTCGGAGAGCGAACTGGGAATCCTGGACCTGATTCAGGTGTTCGTGGA
AACCCTCGACAAGTGCTTCGAAAACGTGTGTGAGCTGGACCTGATATTCC
ACGCCGATGCCGTCCACCACATCCTCTCAGAACTGGTAATGGGCGGAATG
GTCCTGCAGACAAATATGAACGACATAATGGCCAGGATCGAGGAGCAGAA
CAAGATCGTCAAGCAGGAAGCGGGCATCTCGGCTGCACCTGCCCGAGCTG
TGAGCGCCGTGAAGAGTATGAACATTCCGCAACAGATTAAAGACATCAAG
CTACCTGATCTGCCGCAGGCCATTAAGGACTTTAAGTTCGCAAGCTTTCT
AGACCAT
BO11835.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:51:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
or-RA | 576 | CG3029-PA | 1..573 | 17..589 | 2865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:51:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
or-RA | 823 | CG3029-RA | 75..654 | 10..589 | 2870 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:51:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23968562..23968774 | 377..589 | 1065 | 100 | Plus |
2R | 25286936 | 2R | 23968304..23968508 | 176..380 | 1025 | 100 | Plus |
2R | 25286936 | 2R | 23968153..23968244 | 86..177 | 460 | 100 | Plus |
2R | 25286936 | 2R | 23968013..23968089 | 10..86 | 355 | 97.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:51:29 has no hits.
BO11835.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:12 Download gff for
BO11835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
or-RA | 1..576 | 17..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:21 Download gff for
BO11835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
or-RA | 65..655 | 5..593 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:32 Download gff for
BO11835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
or-RA | 82..654 | 17..591 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:13 Download gff for
BO11835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
or-RA | 65..655 | 5..593 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:44 Download gff for
BO11835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
or-RA | 82..654 | 17..591 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:44 Download gff for
BO11835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23968020..23968088 | 17..85 | 100 | -> | Plus |
2R | 23968153..23968244 | 86..177 | 100 | -> | Plus |
2R | 23968306..23968508 | 178..380 | 100 | -> | Plus |
2R | 23968566..23968774 | 381..591 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:32 Download gff for
BO11835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19856089..19856297 | 381..591 | 99 | | Plus |
arm_2R | 19855543..19855611 | 17..85 | 100 | -> | Plus |
arm_2R | 19855676..19855767 | 86..177 | 100 | -> | Plus |
arm_2R | 19855829..19856031 | 178..380 | 100 | -> | Plus |
BO11835.pep Sequence
Translation from 16 to 607
> BO11835.pep
MIKAILVFNNHGKPRLSKFYQYFDESLQQQIIKETFQLVSKRDDNVCNFL
EGGSLIGGSDYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKC
FENVCELDLIFHADAVHHILSELVMGGMVLQTNMNDIMARIEEQNKIVKQ
EAGISAAPARAVSAVKSMNIPQQIKDIKLPDLPQAIKDFKFASFLDH
BO11835.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
or-PA | 191 | CG3029-PA | 1..191 | 1..191 | 976 | 100 | Plus |
AP-2sigma-PA | 142 | CG6056-PA | 1..141 | 1..147 | 269 | 36.7 | Plus |
AP-1sigma-PD | 152 | CG5864-PD | 1..145 | 1..151 | 267 | 34.4 | Plus |
AP-1sigma-PC | 157 | CG5864-PC | 1..146 | 1..152 | 266 | 34.2 | Plus |
AP-1sigma-PB | 157 | CG5864-PB | 1..146 | 1..152 | 266 | 34.2 | Plus |