Clone BO11835 Report

Search the DGRC for BO11835

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:118
Well:35
Vector:pDNR-Dual
Associated Gene/Transcriptor-RA
Protein status:BO11835.pep: validated full length
Sequenced Size:607

Clone Sequence Records

BO11835.3prime Sequence

605 bp (604 high quality bases) assembled on 2006-04-19

> BO11835.3prime
ATGGTCTAGAAAGCTTGCGAACTTAAAGTCCTTAATGGCCTGCGGCAGAT
CAGGTAGCTTGATGTCTTTAATCTGTTGCGGAATGTTCATACTCTTCACG
GCGCTCACAGCTCGGGCAGGTGCAGCCGAGATGCCCGCTTCCTGCTTGAC
GATCTTGTTCTGCTCCTCGATCCTGGCCATTATGTCGTTCATATTTGTCT
GCAGGACCATTCCGCCCATTACCAGTTCTGAGAGGATGTGGTGGACGGCA
TCGGCGTGGAATATCAGGTCCAGCTCACACACGTTTTCGAAGCACTTGTC
GAGGGTTTCCACGAACACCTGAATCAGGTCCAGGATTCCCAGTTCGCTCT
CCGAGGAGTCCACGCAGAAAACGAAGTACAGCGTGGCATAGTGTCTGTAG
ATGAGTTTGTAATCCGATCCGCCAATCAAACTTCCGCCCTCCAGAAAGTT
GCAAACATTATCGTCCCGCTTGGACACCAATTGGAAAGTCTCTTTGATTA
TTTGTTGCTGCAGGCTTTCATCGAAATACTGATAGAACTTCGATAGCCGC
GGCTTCCCGTGATTGTTAAAAACGAGAATGGCTTTTATCATGTCGACTGA
TAACT

BO11835.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG3029-PA 576 or-RA 1..573 591..19 2865 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:04:06
Subject Length Description Subject Range Query Range Score Percent Strand
or-RA 823 CG3029-RA 75..654 598..19 2870 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:04:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23968562..23968774 231..19 1065 100 Minus
2R 25286936 2R 23968304..23968508 432..228 1025 100 Minus
2R 25286936 2R 23968153..23968244 522..431 460 100 Minus
2R 25286936 2R 23968013..23968089 598..522 355 97.4 Minus
Blast to na_te.dros performed on 2015-02-12 19:04:04 has no hits.

BO11835.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:18:07 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:46:27 Download gff for BO11835.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3029-PA 1..576 16..591 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:25:10 Download gff for BO11835.3prime
Subject Subject Range Query Range Percent Splice Strand
or-RA 70..660 15..603 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:57:29 Download gff for BO11835.3prime
Subject Subject Range Query Range Percent Splice Strand
or-RA 70..660 15..603 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:57:29 Download gff for BO11835.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23968008..23968088 523..603 95 -> Minus
2R 23968153..23968244 431..522 100 -> Minus
2R 23968306..23968508 228..430 100 -> Minus
2R 23968566..23968780 15..227 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:25:10 Download gff for BO11835.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19855531..19855611 523..603 95 -> Minus
arm_2R 19855676..19855767 431..522 100 -> Minus
arm_2R 19855829..19856031 228..430 100 -> Minus
arm_2R 19856089..19856303 15..227 99   Minus

BO11835.5prime Sequence

605 bp (604 high quality bases) assembled on 2006-04-19

> BO11835.5prime
GAAGTTATCAGTCGACATGATAAAAGCCATTCTCGTTTTTAACAATCACG
GGAAGCCGCGGCTATCGAAGTTCTATCAGTATTTCGATGAAAGCCTGCAG
CAACAAATAATCAAAGAGACTTTCCAATTGGTGTCCAAGCGGGACGATAA
TGTTTGCAACTTTCTGGAGGGCGGAAGTTTGATTGGCGGATCGGATTACA
AACTCATCTACAGACACTATGCCACGCTGTACTTCGTTTTCTGCGTGGAC
TCCTCGGAGAGCGAACTGGGAATCCTGGACCTGATTCAGGTGTTCGTGGA
AACCCTCGACAAGTGCTTCGAAAACGTGTGTGAGCTGGACCTGATATTCC
ACGCCGATGCCGTCCACCACATCCTCTCAGAACTGGTAATGGGCGGAATG
GTCCTGCAGACAAATATGAACGACATAATGGCCAGGATCGAGGAGCAGAA
CAAGATCGTCAAGCAGGAAGCGGGCATCTCGGCTGCACCTGCCCGAGCTG
TGAGCGCCGTGAAGAGTATGAACATTCCGCAACAGATTAAAGACATCAAG
CTACCTGATCTGCCGCAGGCCATTAAGGACTTTAAGTTCGCAAGCTTTCT
AGACC

BO11835.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3029-PA 576 or-RA 1..573 17..589 2865 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:34:53
Subject Length Description Subject Range Query Range Score Percent Strand
or-RA 823 CG3029-RA 75..654 10..589 2870 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23968562..23968774 377..589 1065 100 Plus
2R 25286936 2R 23968304..23968508 176..380 1025 100 Plus
2R 25286936 2R 23968153..23968244 86..177 460 100 Plus
2R 25286936 2R 23968013..23968089 10..86 355 97.4 Plus
Blast to na_te.dros performed on 2015-02-11 10:34:50 has no hits.

BO11835.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:18:08 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:46:28 Download gff for BO11835.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3029-PA 1..576 17..592 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 03:07:18 Download gff for BO11835.5prime
Subject Subject Range Query Range Percent Splice Strand
or-RA 70..660 5..593 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:36:22 Download gff for BO11835.5prime
Subject Subject Range Query Range Percent Splice Strand
or-RA 70..660 5..593 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:36:22 Download gff for BO11835.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23968008..23968088 5..85 95 -> Plus
2R 23968153..23968244 86..177 100 -> Plus
2R 23968306..23968508 178..380 100 -> Plus
2R 23968566..23968780 381..593 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 03:07:18 Download gff for BO11835.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19855531..19855611 5..85 95 -> Plus
arm_2R 19855676..19855767 86..177 100 -> Plus
arm_2R 19855829..19856031 178..380 100 -> Plus
arm_2R 19856089..19856303 381..593 99   Plus

BO11835.complete Sequence

607 bp assembled on 2006-10-11

GenBank Submission: FJ632214

> BO11835.complete
GAAGTTATCAGTCGACATGATAAAAGCCATTCTCGTTTTTAACAATCACG
GGAAGCCGCGGCTATCGAAGTTCTATCAGTATTTCGATGAAAGCCTGCAG
CAACAAATAATCAAAGAGACTTTCCAATTGGTGTCCAAGCGGGACGATAA
TGTTTGCAACTTTCTGGAGGGCGGAAGTTTGATTGGCGGATCGGATTACA
AACTCATCTACAGACACTATGCCACGCTGTACTTCGTTTTCTGCGTGGAC
TCCTCGGAGAGCGAACTGGGAATCCTGGACCTGATTCAGGTGTTCGTGGA
AACCCTCGACAAGTGCTTCGAAAACGTGTGTGAGCTGGACCTGATATTCC
ACGCCGATGCCGTCCACCACATCCTCTCAGAACTGGTAATGGGCGGAATG
GTCCTGCAGACAAATATGAACGACATAATGGCCAGGATCGAGGAGCAGAA
CAAGATCGTCAAGCAGGAAGCGGGCATCTCGGCTGCACCTGCCCGAGCTG
TGAGCGCCGTGAAGAGTATGAACATTCCGCAACAGATTAAAGACATCAAG
CTACCTGATCTGCCGCAGGCCATTAAGGACTTTAAGTTCGCAAGCTTTCT
AGACCAT

BO11835.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
or-RA 576 CG3029-PA 1..573 17..589 2865 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
or-RA 823 CG3029-RA 75..654 10..589 2870 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23968562..23968774 377..589 1065 100 Plus
2R 25286936 2R 23968304..23968508 176..380 1025 100 Plus
2R 25286936 2R 23968153..23968244 86..177 460 100 Plus
2R 25286936 2R 23968013..23968089 10..86 355 97.4 Plus
Blast to na_te.dros performed on 2014-11-27 16:51:29 has no hits.

BO11835.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:12 Download gff for BO11835.complete
Subject Subject Range Query Range Percent Splice Strand
or-RA 1..576 17..592 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:21 Download gff for BO11835.complete
Subject Subject Range Query Range Percent Splice Strand
or-RA 65..655 5..593 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:32 Download gff for BO11835.complete
Subject Subject Range Query Range Percent Splice Strand
or-RA 82..654 17..591 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:13 Download gff for BO11835.complete
Subject Subject Range Query Range Percent Splice Strand
or-RA 65..655 5..593 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:44 Download gff for BO11835.complete
Subject Subject Range Query Range Percent Splice Strand
or-RA 82..654 17..591 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:44 Download gff for BO11835.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23968020..23968088 17..85 100 -> Plus
2R 23968153..23968244 86..177 100 -> Plus
2R 23968306..23968508 178..380 100 -> Plus
2R 23968566..23968774 381..591 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:32 Download gff for BO11835.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19856089..19856297 381..591 99   Plus
arm_2R 19855543..19855611 17..85 100 -> Plus
arm_2R 19855676..19855767 86..177 100 -> Plus
arm_2R 19855829..19856031 178..380 100 -> Plus

BO11835.pep Sequence

Translation from 16 to 607

> BO11835.pep
MIKAILVFNNHGKPRLSKFYQYFDESLQQQIIKETFQLVSKRDDNVCNFL
EGGSLIGGSDYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKC
FENVCELDLIFHADAVHHILSELVMGGMVLQTNMNDIMARIEEQNKIVKQ
EAGISAAPARAVSAVKSMNIPQQIKDIKLPDLPQAIKDFKFASFLDH

BO11835.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:12
Subject Length Description Subject Range Query Range Score Percent Strand
or-PA 191 CG3029-PA 1..191 1..191 976 100 Plus
AP-2sigma-PA 142 CG6056-PA 1..141 1..147 269 36.7 Plus
AP-1sigma-PD 152 CG5864-PD 1..145 1..151 267 34.4 Plus
AP-1sigma-PC 157 CG5864-PC 1..146 1..152 266 34.2 Plus
AP-1sigma-PB 157 CG5864-PB 1..146 1..152 266 34.2 Plus