Clone Sequence Records
BO11840.3prime Sequence
842 bp (796 high quality bases) assembled on 2006-04-19
> BO11840.3prime
ATGGTCTAGAAAGCTTGCGTCGGTATGATCCAGGTCATAGGACCGCGTTT
TAGGGTTGTATTCGGCATTCCGTACACGTTCCCCGCGCCGCTGCTTTCGC
CTGGCCTGCTGCGCTTGAAGACGGCCTGGATCTGCAGATCGAAGCGCTCC
ATTTCGCTGCCTCTGGGATTGGGATTGGGATTGGGATAGTCCGCCGCCTG
AAACTCGTACACCCCCGTGATCGGAGATCGGGCCGATCCCGGCTGCACCT
GATCCATTTCGTAGTCCGCCACGTCGGGATCCATTGCGCGCCGTTGAACT
TCCCTGCTGACCGCCTCGCTGCTCGTATCGCGACCAATTACTTTGGCCAT
TATTGCGTAGTCTCTTTTGCAGAACTTGTTTAGGTTTAGCCTTTTGGTGC
TGACTCTGCATTTGCCGCATTTTACCCCTGCCGCCCTCGGTGCGATAGTA
CTGAGACTGGGCGGCCATTCCGGCGGCGCCGTTGCGGTCGCCACCAGATC
CTGGAGAGGATTCGGGCTCATCCGGCTCGGGAGCGGTATTCTGGGTGTCC
AGCATGTTGATCATACGCGGTGGTTGTTTTATGCAGGGGGCGATGTGGGA
GCGACTTTGCTGGTAACCTCGAGCGCAGCGGTTGCAGGTCAGTCCGGTGA
CCCCGTCCTTGCAGGGACATTGACCGCTGGTGCTGTTGCAGATCTTGCCA
GATGACCCGATCGGATGGCAATCGCAGGCTTTGCAAACCTTGCGATGGGT
GAGTGGTTTGGTGGCGTCCCGATAGAATCCCTCCTTGCACTGGTGACAAT
TCCGGCCCGTAGTCGAGTGGCGACAATTCTGGGAAACTCCGC
BO11840.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18657-PA | 2181 | NetA-RA | 1188..1594 | 832..426 | 2035 | 100 | Minus |
| CG18657-PA | 2181 | NetA-RA | 1595..1997 | 421..19 | 2015 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:24:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NetA-RB | 3249 | CG18657-RB | 1768..2591 | 842..19 | 4090 | 99.8 | Minus |
| NetA-RC | 3339 | CG18657-RC | 1862..2681 | 842..19 | 4020 | 99.3 | Minus |
| NetA-RA | 3245 | CG18657-RA | 1768..2587 | 842..19 | 4020 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:24:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14604788..14605125 | 19..356 | 1690 | 100 | Plus |
| X | 23542271 | X | 14610435..14610591 | 422..578 | 785 | 100 | Plus |
| X | 23542271 | X | 14610661..14610812 | 579..730 | 760 | 100 | Plus |
| X | 23542271 | X | 14620700..14620813 | 729..842 | 540 | 98.2 | Plus |
| X | 23542271 | X | 14606483..14606548 | 356..421 | 330 | 100 | Plus |
| X | 23542271 | X | 14692308..14692453 | 581..726 | 235 | 77.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:24:50 has no hits.
BO11840.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:14 Download gff for
BO11840.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18657-PA | 1178..2001 | 14..842 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:46:37 Download gff for
BO11840.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18657-PA | 1178..2001 | 14..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:39:27 Download gff for
BO11840.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NetA-RB | 1768..2595 | 14..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:38:34 Download gff for
BO11840.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NetA-RB | 1768..2595 | 14..842 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:38:34 Download gff for
BO11840.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14604784..14605124 | 14..355 | 99 | <- | Plus |
| X | 14606483..14606548 | 356..421 | 100 | <- | Plus |
| X | 14610435..14610591 | 422..578 | 100 | <- | Plus |
| X | 14610661..14610810 | 579..728 | 100 | <- | Plus |
| X | 14620700..14620813 | 729..842 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:39:27 Download gff for
BO11840.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14514733..14514846 | 729..842 | 98 | | Plus |
| arm_X | 14504694..14504843 | 579..728 | 100 | <- | Plus |
| arm_X | 14498817..14499157 | 14..355 | 99 | <- | Plus |
| arm_X | 14500516..14500581 | 356..421 | 100 | <- | Plus |
| arm_X | 14504468..14504624 | 422..578 | 100 | <- | Plus |
BO11840.5prime Sequence
855 bp (793 high quality bases) assembled on 2006-04-19
> BO11840.5prime
GAAGTTATCAGTCGACATGATCCGTGGAATCTTGCTCCTGCTGCTGGGAA
CCACCAGGTTCAGCCCCATCCAGTGCATCTCCAATGACGTGTACTTCAAG
ATGTTTTCGCAACAGGCGCCGCCGGAGGATCCGTGCTACAATAAAGCGCA
CGAGCCACGCGCCTGCATTCCGGACTTTGTGAACGCCGCCTACGATGCTC
CAGTGGTGGCCAGTTCCACGTGCGGATCGTCGGGTGCGCAGCGATATTGC
GAGTACCAGGATCACGAGCGCTCCTGCCACACCTGCGACATGACGGATCC
GTTGCGCAGCTTTCCAGCCCGCTCGCTGACCGATTTGAATAACTCGAATA
ATGTGACCTGCTGGCGCAGTGAGCCGGTGACCGGAAGTGGGGACAACGTA
ACCTTGACCCTCTCGCTGGGCAAGAAGTTCGAGCTGACCTATGTGATCCT
ACAGCTGTGCCCGCATGCTCCGCGTCCCGATTCGATGGTGATCTACAAGA
GCACCGATCACGGGCTCAGTTGGCAGCCATTCCAGTTCTTTAGCTCCCAG
TGCCGCCGGCTTTTCGGACGTCCCGCCCGCCAATCCACTGGACGCCACAA
TGAGCACGAGGCCCGCTGCAGCGATGTCACCAGGCCACTGGTCTCCAGAA
TTGCCTTCAGCACACTGGAGGGACGCCCATCGTCACGGGATCTGGACTCA
TCGCCGGTGCTGCAGGACTGGGTGACGGCCACCGATATCCGGGTGGTGTT
CCATCGCCTTCAACGCCCCGATCCGCAGGCCCTGCTCTCATTGGAAGCCG
GAGGAGCAACGGATTTGGCCAGCGGCAAGTACAGTGTGCCCCTGGCCAAT
GGACC
BO11840.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18657-PA | 2181 | NetA-RA | 1..839 | 17..855 | 4195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:51:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NetA-RC | 3339 | CG18657-RC | 683..1523 | 15..855 | 4205 | 100 | Plus |
| NetA-RB | 3249 | CG18657-RB | 589..1429 | 15..855 | 4205 | 100 | Plus |
| NetA-RA | 3245 | CG18657-RA | 589..1429 | 15..855 | 4205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:51:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14652406..14653246 | 855..15 | 4205 | 100 | Minus |
| X | 23542271 | X | 14747315..14747424 | 760..651 | 220 | 80 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:51:48 has no hits.
BO11840.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:15 Download gff for
BO11840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18657-PA | 1..839 | 17..855 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:46:38 Download gff for
BO11840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18657-PA | 1..839 | 17..855 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:46:51 Download gff for
BO11840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NetA-RA | 589..1429 | 15..855 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:21:29 Download gff for
BO11840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NetA-RA | 589..1429 | 15..855 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:21:29 Download gff for
BO11840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14652406..14653246 | 15..855 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:46:51 Download gff for
BO11840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14546439..14547279 | 15..855 | 100 | | Minus |
BO11840.complete Sequence
2035 bp assembled on 2008-01-17
> BO11840.complete
GAAGTTATCAGTCGACATGATCCGTGGAATCTTGCTCCTGCTGCTGGGAA
CCACCAGGTTCAGCCCCATCCAGTGCATCTCCAATGACGTGTACTTCAAG
ATGTTTTCGCAACAGGCGCCGCCGGAGGATCCGTGCTACAATAAAGCGCA
CGAGCCACGCGCCTGCATTCCGGACTTTGTGAACGCCGCCTACGATGCTC
CAGTGGTGGCCAGTTCCACGTGCGGATCGTCGGGTGCGCAGCGATATTGC
GAGTACCAGGATCACGAGCGCTCCTGCCACACCTGCGACATGACGGATCC
GTTGCGCAGCTTTCCAGCCCGCTCGCTGACCGATTTGAATAACTCGAATA
ATGTGACCTGCTGGCGCAGTGAGCCGGTGACCGGAAGTGGGGACAACGTA
ACCTTGACCCTCTCGCTGGGCAAGAAGTTCGAGCTGACCTATGTGATCCT
ACAGCTGTGCCCGCATGCTCCGCGTCCCGATTCGATGGTGATCTACAAGA
GCACCGATCACGGGCTCAGTTGGCAGCCATTCCAGTTCTTTAGCTCCCAG
TGCCGCCGGCTTTTCGGACGTCCCGCCCGCCAATCCACTGGACGCCACAA
TGAGCACGAGGCCCGCTGCAGCGATGTCACCAGGCCACTGGTCTCCAGAA
TTGCCTTCAGCACACTGGAGGGACGCCCATCGTCACGGGATCTGGACTCA
TCGCCGGTGCTGCAGGACTGGGTGACGGCCACCGATATCCGGGTGGTGTT
CCATCGCCTTCAACGCCCCGATCCGCAGGCCCTGCTCTCATTGGAAGCCG
GAGGAGCAACGGATTTGGCCAGCGGCAAGTACAGTGTGCCCCTGGCCAAT
GGACCCGCTGGCAATAATATTGAGGCGAATCTCGGTGGGGATGTGGCAAC
ATCCGGCAGTGGATTGCACTATGCCATCTCTGACTTTTCGGTGGGCGGAC
GGTGCAAGTGCAATGGACACGCCTCCAAGTGTTCCACGGACGCCAGTGGG
CAGCTGAACTGCGAGTGCAGCCACAATACCGCTGGAAGGGATTGCGAACG
CTGCAAGCCATTCCACTTCGATCGTCCATGGGCCAGAGCCACCGCCAAGG
AAGCCAATGAGTGCAAAGAGTGCAACTGCAACAAGCACGCCCGTCAGTGC
CGCTTCAATATGGAAATCTTTCGGCTTTCGCAGGGCGTCTCCGGCGGAGT
CTGCCAGAATTGTCGCCACTCGACTACGGGCCGGAATTGTCACCAGTGCA
AGGAGGGATTCTATCGGGACGCCACCAAACCACTCACCCATCGCAAGGTT
TGCAAAGCCTGCGATTGCCATCCGATCGGGTCATCTGGCAAGATCTGCAA
CAGCACCAGCGGTCAATGTCCCTGCAAGGACGGGGTCACCGGACTGACCT
GCAACCGCTGCGCTCGAGGTTACCAGCAAAGTCGCTCCCACATCGCCCCC
TGCATAAAACAACCACCGCGTATGATCAACATGCTGGACACCCAGAATAC
CGCTCCCGAGCCGGATGAGCCCGAATCCTCTCCAGGATCTGGTGGCGACC
GCAACGGCGCCGCCGGAATGGCCGCCCAGTCTCAGTACTATCGCACCGAG
GGCGGCAGGGGTAAAATGCGGCAAATGCAGAGTCAGCACCAAAAGGCTAA
ACCTAAACAAGTTCTGCAAAAGAGACTACGCAATAATGGCCAAAGTAATT
GGTCGCGATACGAGCAGCGAGGCGGTCAGCAGGGAAGTTCAACGGCGCGC
AATGGATCCCGACGTGGCGGACTACGAAATGGATCAGGTGCAGCCGGGAT
CGGCCCGATCTCCGATCACGGGGGTGTACGAGTTTCAGGCGGCGGACTAT
CCCAATCCCAATCCCAATCCCAGAGGCAGCGAAATGGAGCGCTTCGATCT
GCAGATCCAGGCCGTCTTCAAGCGCAGCAGGCCAGGCGAAAGCAGCGGCG
CGGGGAACGTGTACGGAATGCCGAATACAACCCTAAAACGCGGTCCTATG
ACCTGGATCATACCGACGCAAGCTTTCTAGACCAT
BO11840.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:02:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NetA-RB | 2004 | CG18657-PB | 1..2001 | 17..2017 | 10005 | 100 | Plus |
| NetA-RC | 2181 | CG18657-PC | 1..1997 | 17..2017 | 9910 | 99.8 | Plus |
| NetA-RA | 2181 | CG18657-PA | 1..1997 | 17..2017 | 9910 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:02:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NetA-RB | 3249 | CG18657-RB | 589..2591 | 15..2017 | 10015 | 100 | Plus |
| NetA-RC | 3339 | CG18657-RC | 683..2681 | 15..2017 | 9920 | 99.8 | Plus |
| NetA-RA | 3245 | CG18657-RA | 589..2587 | 15..2017 | 9920 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:02:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14652143..14653246 | 1118..15 | 5520 | 100 | Minus |
| X | 23542271 | X | 14604788..14605125 | 2017..1680 | 1690 | 100 | Minus |
| X | 23542271 | X | 14620700..14620890 | 1307..1117 | 955 | 100 | Minus |
| X | 23542271 | X | 14610435..14610591 | 1614..1458 | 785 | 100 | Minus |
| X | 23542271 | X | 14610661..14610812 | 1457..1306 | 760 | 100 | Minus |
| X | 23542271 | X | 14606483..14606548 | 1680..1615 | 330 | 100 | Minus |
| X | 23542271 | X | 14692308..14692453 | 1455..1310 | 235 | 77.4 | Minus |
| X | 23542271 | X | 14746574..14746686 | 1117..1005 | 235 | 80.5 | Minus |
| X | 23542271 | X | 14747315..14747424 | 760..651 | 220 | 80 | Minus |
Blast to na_te.dros performed on 2014-11-27 17:02:17 has no hits.
BO11840.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:15 Download gff for
BO11840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NetA-RA | 1..2001 | 17..2022 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:35:54 Download gff for
BO11840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NetA-RA | 588..2584 | 17..2019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:26 Download gff for
BO11840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NetA-RB | 591..2591 | 17..2019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:15 Download gff for
BO11840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NetA-RA | 586..2588 | 15..2022 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:58 Download gff for
BO11840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NetA-RB | 591..2591 | 17..2019 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:58 Download gff for
BO11840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14620700..14620888 | 1119..1307 | 100 | <- | Minus |
| X | 14604786..14605124 | 1681..2019 | 99 | <- | Minus |
| X | 14606483..14606548 | 1615..1680 | 100 | <- | Minus |
| X | 14610435..14610591 | 1458..1614 | 100 | <- | Minus |
| X | 14610661..14610810 | 1308..1457 | 100 | <- | Minus |
| X | 14652143..14653244 | 17..1118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:26 Download gff for
BO11840.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14498819..14499157 | 1681..2019 | 99 | <- | Minus |
| arm_X | 14500516..14500581 | 1615..1680 | 100 | <- | Minus |
| arm_X | 14504468..14504624 | 1458..1614 | 100 | <- | Minus |
| arm_X | 14504694..14504843 | 1308..1457 | 100 | <- | Minus |
| arm_X | 14514733..14514921 | 1119..1307 | 100 | <- | Minus |
| arm_X | 14546176..14547277 | 17..1118 | 100 | | Minus |
BO11840.pep Sequence
Translation from 16 to 2035
> BO11840.pep
MIRGILLLLLGTTRFSPIQCISNDVYFKMFSQQAPPEDPCYNKAHEPRAC
IPDFVNAAYDAPVVASSTCGSSGAQRYCEYQDHERSCHTCDMTDPLRSFP
ARSLTDLNNSNNVTCWRSEPVTGSGDNVTLTLSLGKKFELTYVILQLCPH
APRPDSMVIYKSTDHGLSWQPFQFFSSQCRRLFGRPARQSTGRHNEHEAR
CSDVTRPLVSRIAFSTLEGRPSSRDLDSSPVLQDWVTATDIRVVFHRLQR
PDPQALLSLEAGGATDLASGKYSVPLANGPAGNNIEANLGGDVATSGSGL
HYAISDFSVGGRCKCNGHASKCSTDASGQLNCECSHNTAGRDCERCKPFH
FDRPWARATAKEANECKECNCNKHARQCRFNMEIFRLSQGVSGGVCQNCR
HSTTGRNCHQCKEGFYRDATKPLTHRKVCKACDCHPIGSSGKICNSTSGQ
CPCKDGVTGLTCNRCARGYQQSRSHIAPCIKQPPRMINMLDTQNTAPEPD
EPESSPGSGGDRNGAAGMAAQSQYYRTEGGRGKMRQMQSQHQKAKPKQVL
QKRLRNNGQSNWSRYEQRGGQQGSSTARNGSRRGGLRNGSGAAGIGPISD
HGGVRVSGGGLSQSQSQSQRQRNGALRSADPGRLQAQQARRKQRRGERVR
NAEYNPKTRSYDLDHTDASFLDH
BO11840.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:27:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NetA-PB | 667 | CG18657-PB | 1..667 | 1..667 | 3626 | 100 | Plus |
| NetA-PC | 726 | CG18657-PC | 1..537 | 1..535 | 2923 | 99.4 | Plus |
| NetA-PA | 726 | CG18657-PA | 1..537 | 1..535 | 2923 | 99.4 | Plus |
| NetB-PG | 785 | CG10521-PG | 385..651 | 301..549 | 799 | 53.1 | Plus |
| NetB-PF | 793 | CG10521-PF | 393..659 | 301..549 | 799 | 53.1 | Plus |
| NetB-PG | 785 | CG10521-PG | 24..262 | 38..270 | 638 | 54.7 | Plus |
