Clone Sequence Records
BO11843.3prime Sequence
727 bp (711 high quality bases) assembled on 2006-04-19
> BO11843.3prime
ATGGTCTAGAAAGCTTGCCCACATATTTTCTGATTCTTCTCGAAACTTAA
GGCCCTGGGCTTCGTTGATGATGGCGGCCAGGGCGGGATGTTGGTAGCGC
TCCCGGAAAATGGCCGATCCGTTTATGCGATCCGATCCGTTGGTGTTGCC
ATTCAGGGTGCCCATGTTCCCATTCCCATTGCCATAGTGCATCATCGTCA
GTTTGTGCTGCGGCGTATGCTGTGGCGTCAGTGATGTGGGGGGCGTGGCA
TTACCGTTCTTATAGTAGCGATTCTGGTTGGGATCGTAAGTGGCCTGCTC
CTGATTCTGATTGAGACGATTGGCCATCTTGATGGAGGCACAGCGATCCT
CCTCGTTGTTGCGCATCTTCAAGATGCGTTGATCCTGCACCGAGTATCTC
GATCCGTTCAGGGAATTCAACTGATTGAGATTGCTTACTTGGGTGCTCAG
CTTTTTGGCTCGAAAACTGCCGCCTGGCGATGAGTTATTCAGCAGTGTTC
CCCTCGACGAACTGCCATTGGTCTCTGTGCTGTCCCTGCTCGCCTCCCGG
TAGCTCGAGGGGCGGTGCGTCGATGGGGGCGTGTCCAGGCCACTATCATG
GGCCGAACAGTCCAGTTCGGTTTTGGCCAGCCCGATGTTGCTGCCGCCGC
CAGTGGGTAACATTGGTTGAACTGAGTGCCTCATATCAGTGGGCGCCCTT
GGCTTCCGGTACAGCCAATCGCGGTCC
BO11843.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32982-PB | 1653 | CG32982-RB | 942..1650 | 727..19 | 3545 | 100 | Minus |
| CG32982-PC | 1716 | CG32982-RC | 1005..1713 | 727..19 | 3545 | 100 | Minus |
| CG32982-PA | 2148 | CG32982-RA | 1648..1994 | 384..38 | 1735 | 100 | Minus |
| CG32982-PA | 2148 | CG32982-RA | 1359..1648 | 727..438 | 1450 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:21:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32982-RE | 3397 | CG32982-RE | 2128..2836 | 727..19 | 3545 | 100 | Minus |
| CG32982-RD | 3241 | CG32982-RD | 1972..2680 | 727..19 | 3545 | 100 | Minus |
| CG32982-RB | 2426 | CG32982-RB | 1157..1865 | 727..19 | 3545 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:21:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9162074..9162708 | 673..39 | 3175 | 100 | Minus |
| 2L | 23513712 | 2L | 9161957..9162012 | 727..672 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:21:11 has no hits.
BO11843.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:20 Download gff for
BO11843.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32982-PB | 942..1653 | 15..727 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:46:44 Download gff for
BO11843.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32982-PC | 1005..1716 | 15..727 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:37:56 Download gff for
BO11843.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32982-RB | 1157..1868 | 15..727 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:14:09 Download gff for
BO11843.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32982-RB | 1157..1868 | 15..727 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:14:09 Download gff for
BO11843.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9161957..9162012 | 672..727 | 100 | -> | Minus |
| 2L | 9162076..9162708 | 39..671 | 100 | -> | Minus |
| 2L | 9163141..9163163 | 15..38 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:37:56 Download gff for
BO11843.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9161957..9162012 | 672..727 | 100 | -> | Minus |
| arm_2L | 9162076..9162708 | 39..671 | 100 | -> | Minus |
| arm_2L | 9163141..9163163 | 15..38 | 91 | | Minus |
BO11843.5prime Sequence
755 bp (750 high quality bases) assembled on 2006-04-19
> BO11843.5prime
GAAGTTATCAGTCGACATGATTTTTTCCACGGATTTGCATTGGCAATCCT
TGCTGGCAGGACGCATTCCGGTGGCCTCCATGACAGGACCCATTAAACGC
GGACTGCTCTGGCAGCAAAGGGATCGGCTCTTCTCTCGCTGGAAGGAGCG
ATACTTTGTGCTCACTCGTGACTACTTGCACTGCTTCAAAAGAGCCTCGG
GATCGGCCAATGAACGTGCCTCGGATATGGGACAGTTTATCTTCAAGGTC
AAGCTGGTGGACGTGGAGAAGGTGGAGTGGCTGAATCGGCGCTCCTACAG
CGCCATTGGTCTGCTACTGGGTCGCGAGGGTCGTGTTCTACTCCGCTGCG
ATGATGGCCTCGAGGATTGGTTCGAGCTGCTGGAGGAATGCACAATGACC
TCCAAGGAGCGCAGACGAGCCCTGAAGATTGCCCAAGGACCCAGATCCCG
AGCCTCATTGGCTGCTCCCGTTTCGCATGCTTCGCTGCAGTTCCAGCATT
TTGGACTCGGAGGCACTTACTCGAGTGCCCTGGACGATTGGCTGATGACG
AATGGAACCGGTGGTCTGGCCCGGCACAAGATTGGAGCTGGCAGTCTGAA
CGGTTATGGCGGGGCCAATCCCTTCCTGTTCTCCGATTCGGTGCCGGATC
TGAGTGCCCTGAACAACGAAAACCACAATCATCACCTGAACGGCATCAGC
ACGAACCACTCGACGCCGCAAAAAATACCGCACCACAGCAATGCGAATCT
CAGTC
BO11843.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32982-PB | 1653 | CG32982-RB | 1..739 | 17..755 | 3645 | 99.7 | Plus |
| CG32982-PA | 2148 | CG32982-RA | 444..1156 | 43..755 | 3515 | 99.7 | Plus |
| CG32982-PC | 1716 | CG32982-RC | 91..802 | 44..755 | 3510 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:43:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32982-RB | 2426 | CG32982-RB | 216..954 | 17..755 | 3665 | 99.7 | Plus |
| CG32982-RD | 3241 | CG32982-RD | 1057..1769 | 43..755 | 3535 | 99.7 | Plus |
| CG32982-RG | 2766 | CG32982-RG | 790..1502 | 43..755 | 3535 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:43:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9161383..9161754 | 384..755 | 1830 | 99.5 | Plus |
| 2L | 23513712 | 2L | 9161129..9161269 | 246..386 | 705 | 100 | Plus |
| 2L | 23513712 | 2L | 9154658..9154765 | 43..150 | 540 | 100 | Plus |
| 2L | 23513712 | 2L | 9156497..9156596 | 150..249 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:43:31 has no hits.
BO11843.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:21 Download gff for
BO11843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32982-PB | 1..739 | 17..755 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:46:46 Download gff for
BO11843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32982-PB | 1..739 | 17..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:45:53 Download gff for
BO11843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32982-RB | 206..954 | 8..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:06:27 Download gff for
BO11843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32982-RB | 206..954 | 8..755 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:06:27 Download gff for
BO11843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9156498..9156594 | 151..247 | 100 | -> | Plus |
| 2L | 9161131..9161268 | 248..385 | 100 | -> | Plus |
| 2L | 9151404..9151440 | 8..43 | 91 | -> | Plus |
| 2L | 9154659..9154765 | 44..150 | 100 | -> | Plus |
| 2L | 9161385..9161754 | 386..755 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:45:53 Download gff for
BO11843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9151404..9151440 | 8..43 | 91 | -> | Plus |
| arm_2L | 9154659..9154765 | 44..150 | 100 | -> | Plus |
| arm_2L | 9156498..9156594 | 151..247 | 100 | -> | Plus |
| arm_2L | 9161131..9161268 | 248..385 | 100 | -> | Plus |
| arm_2L | 9161385..9161754 | 386..755 | 99 | | Plus |
BO11843.complete Sequence
1684 bp assembled on 2008-01-17
GenBank Submission: FJ632215
> BO11843.complete
GAAGTTATCAGTCGACATGATTTTTTCCACGGATTTGCATTGGCAATCCT
TGCTGGCAGGACGCATTCCGGTGGCCTCCATGACAGGACCCATTAAACGC
GGACTGCTCTGGCAGCAAAGGGATCGGCTCTTCTCTCGCTGGAAGGAGCG
ATACTTTGTGCTCACTCGTGACTACTTGCACTGCTTCAAAAGAGCCTCGG
GATCGGCCAATGAACGTGCCTCGGATATGGGACAGTTTATCTTCAAGGTC
AAGCTGGTGGACGTGGAGAAGGTGGAGTGGCTGAATCGGCGCTCCTACAG
CGCCATTGGTCTGCTACTGGGTCGCGAGGGTCGTGTTCTACTCCGCTGCG
ATGATGGCCTCGAGGATTGGTTCGAGCTGCTGGAGGAATGCACAATGACC
TCCAAGGAGCGCAGACGAGCCCTGAAGATTGCCCAAGGACCCAGATCCCG
AGCCTCATTGGCTGCTCCCGTTTCGCATGCTTCGCTGCAGTTCCAGCATT
TTGGACTCGGAGGCACTTACTCGAGTGCCCTGGACGATTGGCTGATGACG
AATGGAACCGGTGGTCTGGCCCGGCACAAGATTGGAGCTGGCAGTCTGAA
CGGTTATGGCGGGGCCAATCCCTTCCTGTTCTCCGATTCGGTGCCGGATC
TGAGTGCCCTGAACAACGAAAACCACAATCATCACCTGAGCGGCATCAGC
ACGAACCACTCGACGCCGCAAAAGATACCGCACCACAGCAATGCGAATCT
CAGTCGATACTCCAATGGATATGTCTCGGCCCAGAACAGTTTCACCCAAG
CCGGAGCACTCTACGGATCGCCTAGGCGGATCTTTATCAACAGCAGCTTC
GGTTCCAATCAGGTGGTGGATGAGGAGACCGAGGAGACGGAGGTTCAGCT
GAGGAGACCCAGACTGTTCCGGGGAGTTAGCGCTACTCCGGATAATGGCA
ACGAACTGGACCGCGATTGGCTGTACCGGAAGCCAAGGGCGCCCACTGAT
ATGAGGCACTCAGTTCAACCAATGTTACCCACTGGCGGCGGCAGCAACAT
CGGGCTGGCCAAAACCGAACTGGACTGTTCGGCCCATGATAGTGGCCTGG
ACACGCCCCCATCGACGCACCGCCCCTCGAGCTACCGGGAGGCGAGCAGG
GACAGCACAGAGACCAATGGCAGTTCGTCGAGGGGAACACTGCTGAATAA
CTCATCGCCAGGCGGCAGTTTTCGAGCCAAAAAGCTGAGCACCCAAGTAA
GCAATCTCAATCAGTTGAATTCCCTGAACGGATCGAGATACTCGGTGCAG
GATCAACGCATCTTGAAGATGCGCAACAACGAGGAGGATCGCTGTGCCTC
CATCAAGATGGCCAATCGTCTCAATCAGAATCAGGAGCAGGCCACTTACG
ATCCCAACCAGAATCGCTACTATAAGAACGGTAATGCCACGCCCCCCACA
TCACTGACGCCACAGCATACGCCGCAGCACAAACTGACGATGATGCACTA
TGGCAATGGGAATGGGAACATGGGCACCCTGAATGGCAACACCAACGGAT
CGGATCGCATAAACGGATCGGCCATTTTCCGGGAGCGCTACCAACATCCC
GCCCTGGCCGCCATCATCAACGAAGCCCAGGGCCTTAAGTTTCGAGAAGA
ATCAGAAAATATGTGGGCAAGCTTTCTAGACCAT
BO11843.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:14:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32982-RB | 1653 | CG32982-PB | 1..1650 | 17..1666 | 8250 | 100 | Plus |
| CG32982-RD | 2337 | CG32982-PD | 711..2334 | 43..1666 | 8120 | 100 | Plus |
| CG32982-RE | 2382 | CG32982-PE | 757..2379 | 44..1666 | 8115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:14:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32982-RB | 2426 | CG32982-RB | 216..1865 | 17..1666 | 8250 | 100 | Plus |
| CG32982-RD | 3241 | CG32982-RD | 1057..2680 | 43..1666 | 8120 | 100 | Plus |
| CG32982-RE | 3397 | CG32982-RE | 1214..2836 | 44..1666 | 8115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:14:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9162074..9162708 | 1012..1646 | 3175 | 100 | Plus |
| 2L | 23513712 | 2L | 9161383..9162012 | 384..1013 | 3150 | 100 | Plus |
| 2L | 23513712 | 2L | 9161129..9161269 | 246..386 | 705 | 100 | Plus |
| 2L | 23513712 | 2L | 9154658..9154765 | 43..150 | 540 | 100 | Plus |
| 2L | 23513712 | 2L | 9156497..9156596 | 150..249 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:14:46 has no hits.
BO11843.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:18 Download gff for
BO11843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32982-RB | 1..1653 | 17..1670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:34:10 Download gff for
BO11843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32982-RB | 214..1863 | 17..1668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:39 Download gff for
BO11843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32982-RB | 216..1865 | 17..1668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:18 Download gff for
BO11843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32982-RB | 204..1866 | 8..1670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:06:53 Download gff for
BO11843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32982-RB | 216..1865 | 17..1668 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:06:53 Download gff for
BO11843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9151414..9151440 | 17..43 | 100 | -> | Plus |
| 2L | 9154659..9154765 | 44..150 | 100 | -> | Plus |
| 2L | 9156498..9156594 | 151..247 | 100 | -> | Plus |
| 2L | 9161131..9161268 | 248..385 | 100 | -> | Plus |
| 2L | 9161385..9162012 | 386..1013 | 100 | -> | Plus |
| 2L | 9162076..9162708 | 1014..1646 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:39 Download gff for
BO11843.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9151414..9151440 | 17..43 | 100 | -> | Plus |
| arm_2L | 9154659..9154765 | 44..150 | 100 | -> | Plus |
| arm_2L | 9156498..9156594 | 151..247 | 100 | -> | Plus |
| arm_2L | 9161131..9161268 | 248..385 | 100 | -> | Plus |
| arm_2L | 9161385..9162012 | 386..1013 | 100 | -> | Plus |
| arm_2L | 9162076..9162708 | 1014..1646 | 100 | -> | Plus |
BO11843.pep Sequence
Translation from 16 to 1684
> BO11843.pep
MIFSTDLHWQSLLAGRIPVASMTGPIKRGLLWQQRDRLFSRWKERYFVLT
RDYLHCFKRASGSANERASDMGQFIFKVKLVDVEKVEWLNRRSYSAIGLL
LGREGRVLLRCDDGLEDWFELLEECTMTSKERRRALKIAQGPRSRASLAA
PVSHASLQFQHFGLGGTYSSALDDWLMTNGTGGLARHKIGAGSLNGYGGA
NPFLFSDSVPDLSALNNENHNHHLSGISTNHSTPQKIPHHSNANLSRYSN
GYVSAQNSFTQAGALYGSPRRIFINSSFGSNQVVDEETEETEVQLRRPRL
FRGVSATPDNGNELDRDWLYRKPRAPTDMRHSVQPMLPTGGGSNIGLAKT
ELDCSAHDSGLDTPPSTHRPSSYREASRDSTETNGSSSRGTLLNNSSPGG
SFRAKKLSTQVSNLNQLNSLNGSRYSVQDQRILKMRNNEEDRCASIKMAN
RLNQNQEQATYDPNQNRYYKNGNATPPTSLTPQHTPQHKLTMMHYGNGNG
NMGTLNGNTNGSDRINGSAIFRERYQHPALAAIINEAQGLKFREESENMW
ASFLDH
BO11843.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:27:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32982-PB | 550 | CG32982-PB | 1..550 | 1..550 | 2906 | 100 | Plus |
| CG32982-PE | 793 | CG32982-PE | 253..793 | 10..550 | 2853 | 100 | Plus |
| CG32982-PD | 778 | CG32982-PD | 238..778 | 10..550 | 2853 | 100 | Plus |
| CG32982-PF | 730 | CG32982-PF | 164..682 | 10..546 | 2701 | 96.3 | Plus |
| CG32982-PG | 720 | CG32982-PG | 149..667 | 10..546 | 2701 | 96.3 | Plus |
