Clone Sequence Records
BO11846.3prime Sequence
554 bp (553 high quality bases) assembled on 2006-04-19
> BO11846.3prime
ATGGTCTAGAAAGCTTGCAGGACAGCACTCGCTCTCGTCGGGATTCTTCT
TGTTCCAGCCGAAGAAGAAGTAGCCCAGACCCAGTCCCAGGATCACTGCC
AGGCACAGCCAGTAGTTGAAGGTCATGAAGATCAGCATCAGCAGGTACGA
GATGACGATCTGCAGCAGGTTCAGCAGGGACTGGACGATGTGCGACGAGG
CGAACAAGCGCTGCCAGTAGGTCTGCTCCCTCGGCTCCGCCAGGGGAGCT
TCCGAGCAGCATCCTCCGGCTGCCGGAGCCTCGTTCTTCCTACGCTGCTC
CGCCGCCAGCTGCTCGCTTGCTCGACGGGCTTCCCTGCGCGCCAGTTGCT
GTCGCAGGAACTTGAGCGCCTCATACAGGAAGGACACCAGGAAGATGGCC
AGGGCGGAGAGCACGAACTCCGTCACAGTGGACGCCACCCATCCGCGCCA
CAAAATTCGCTCGCAGTGTCCAGCGTGGAACACCATGATCATAGGGCAGG
ACTTGGCCGTGCTGGTGCTGTCATCCGAGCCGTGATCCATGTCGACTGAT
AACT
BO11846.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7459-PA | 525 | Ctr1B-RA | 1..522 | 540..19 | 2610 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:04:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ctr1B-RA | 953 | CG7459-RA | 126..647 | 540..19 | 2610 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:04:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8318437..8318899 | 481..19 | 2315 | 100 | Minus |
3R | 32079331 | 3R | 8317737..8317796 | 540..481 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:04:10 has no hits.
BO11846.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:26 Download gff for
BO11846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ctr1B-PA | 1..525 | 18..540 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:46:53 Download gff for
BO11846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7459-PA | 1..525 | 18..540 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:25:11 Download gff for
BO11846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ctr1B-RA | 117..647 | 19..548 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:57:54 Download gff for
BO11846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ctr1B-RA | 117..647 | 19..548 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:57:54 Download gff for
BO11846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8317728..8317796 | 481..548 | 94 | -> | Minus |
3R | 8318438..8318899 | 19..480 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:25:11 Download gff for
BO11846.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4143450..4143518 | 481..548 | 94 | -> | Minus |
arm_3R | 4144160..4144621 | 19..480 | 100 | | Minus |
BO11846.5prime Sequence
554 bp (553 high quality bases) assembled on 2006-04-19
> BO11846.5prime
GAAGTTATCAGTCGACATGGATCACGGCTCGGATGACAGCACCAGCACGG
CCAAGTCCTGCCCTATGATCATGGTGTTCCACGCTGGACACTGCGAGCGA
ATTTTGTGGCGCGGATGGGTGGCGTCCACTGTGACGGAGTTCGTGCTCTC
CGCCCTGGCCATCTTCCTGGTGTCCTTCCTGTATGAGGCGCTCAAGTTCC
TGCGACAGCAACTGGCGCGCAGGGAAGCCCGTCGAGCAAGCGAGCAGCTG
GCGGCGGAGCAGCGTAGGAAGAACGAGGCTCCGGCAGCCGGAGGATGCTG
CTCGGAAGCTCCCCTGGCGGAGCCGAGGGAGCAGACCTACTGGCAGCGCT
TGTTCGCCTCGTCGCACATCGTCCAGTCCCTGCTGAACCTGCTGCAGATC
GTCATCTCGTACCTGCTGATGCTGATCTTCATGACCTTCAACTACTGGCT
GTGCCTGGCAGTGATCCTGGGACTGGGTCTGGGCTACTTCTTCTTCGGCT
GGAACAAGAAGAATCCCGACGAGAGCGAGTGCTGTCCTGCAAGCTTTCTA
GACC
BO11846.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7459-PA | 525 | Ctr1B-RA | 1..522 | 17..538 | 2610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:15:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ctr1B-RA | 953 | CG7459-RA | 126..647 | 17..538 | 2610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:15:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8318437..8318899 | 76..538 | 2315 | 100 | Plus |
3R | 32079331 | 3R | 8317737..8317796 | 17..76 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:15:34 has no hits.
BO11846.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:27 Download gff for
BO11846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ctr1B-PA | 1..525 | 17..539 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:46:54 Download gff for
BO11846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7459-PA | 1..525 | 17..539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:57:18 Download gff for
BO11846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ctr1B-RA | 117..647 | 9..538 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:21:41 Download gff for
BO11846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ctr1B-RA | 117..647 | 9..538 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:21:41 Download gff for
BO11846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8317728..8317796 | 9..76 | 94 | -> | Plus |
3R | 8318438..8318899 | 77..538 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:57:18 Download gff for
BO11846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4143450..4143518 | 9..76 | 94 | -> | Plus |
arm_3R | 4144160..4144621 | 77..538 | 100 | | Plus |
BO11846.complete Sequence
556 bp assembled on 2006-10-11
GenBank Submission: FJ632216
> BO11846.complete
GAAGTTATCAGTCGACATGGATCACGGCTCGGATGACAGCACCAGCACGG
CCAAGTCCTGCCCTATGATCATGGTGTTCCACGCTGGACACTGCGAGCGA
ATTTTGTGGCGCGGATGGGTGGCGTCCACTGTGACGGAGTTCGTGCTCTC
CGCCCTGGCCATCTTCCTGGTGTCCTTCCTGTATGAGGCGCTCAAGTTCC
TGCGACAGCAACTGGCGCGCAGGGAAGCCCGTCGAGCAAGCGAGCAGCTG
GCGGCGGAGCAGCGTAGGAAGAACGAGGCTCCGGCAGCCGGAGGATGCTG
CTCGGAAGCTCCCCTGGCGGAGCCGAGGGAGCAGACCTACTGGCAGCGCT
TGTTCGCCTCGTCGCACATCGTCCAGTCCCTGCTGAACCTGCTGCAGATC
GTCATCTCGTACCTGCTGATGCTGATCTTCATGACCTTCAACTACTGGCT
GTGCCTGGCAGTGATCCTGGGACTGGGTCTGGGCTACTTCTTCTTCGGCT
GGAACAAGAAGAATCCCGACGAGAGCGAGTGCTGTCCTGCAAGCTTTCTA
GACCAT
BO11846.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:55:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ctr1B-RA | 525 | CG7459-PA | 1..522 | 17..538 | 2610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:55:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ctr1B-RA | 953 | CG7459-RA | 126..647 | 17..538 | 2610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:55:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8318437..8318899 | 76..538 | 2315 | 100 | Plus |
3R | 32079331 | 3R | 8317737..8317796 | 17..76 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:55:56 has no hits.
BO11846.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:16 Download gff for
BO11846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ctr1B-RA | 1..525 | 17..539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:13 Download gff for
BO11846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ctr1B-RA | 111..641 | 9..538 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:46:39 Download gff for
BO11846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ctr1B-RA | 126..647 | 17..540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:16 Download gff for
BO11846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ctr1B-RA | 111..641 | 9..538 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:26 Download gff for
BO11846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ctr1B-RA | 126..647 | 17..540 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:26 Download gff for
BO11846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8317737..8317796 | 17..76 | 100 | -> | Plus |
3R | 8318438..8318899 | 77..540 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:46:39 Download gff for
BO11846.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4143459..4143518 | 17..76 | 100 | -> | Plus |
arm_3R | 4144160..4144621 | 77..540 | 99 | | Plus |
BO11846.pep Sequence
Translation from 16 to 556
> BO11846.pep
MDHGSDDSTSTAKSCPMIMVFHAGHCERILWRGWVASTVTEFVLSALAIF
LVSFLYEALKFLRQQLARREARRASEQLAAEQRRKNEAPAAGGCCSEAPL
AEPREQTYWQRLFASSHIVQSLLNLLQIVISYLLMLIFMTFNYWLCLAVI
LGLGLGYFFFGWNKKNPDESECCPASFLDH
BO11846.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ctr1B-PA | 174 | CG7459-PA | 1..174 | 1..174 | 920 | 100 | Plus |
Ctr1A-PB | 231 | CG3977-PB | 66..220 | 2..164 | 276 | 37.4 | Plus |
Ctr1A-PA | 231 | CG3977-PA | 66..220 | 2..164 | 276 | 37.4 | Plus |
Ctr1A-PD | 241 | CG3977-PD | 66..230 | 2..164 | 274 | 36.5 | Plus |
Ctr1A-PC | 241 | CG3977-PC | 66..230 | 2..164 | 274 | 36.5 | Plus |