Clone BO11846 Report

Search the DGRC for BO11846

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:118
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCtr1B-RA
Protein status:BO11846.pep: validated full length
Sequenced Size:556

Clone Sequence Records

BO11846.3prime Sequence

554 bp (553 high quality bases) assembled on 2006-04-19

> BO11846.3prime
ATGGTCTAGAAAGCTTGCAGGACAGCACTCGCTCTCGTCGGGATTCTTCT
TGTTCCAGCCGAAGAAGAAGTAGCCCAGACCCAGTCCCAGGATCACTGCC
AGGCACAGCCAGTAGTTGAAGGTCATGAAGATCAGCATCAGCAGGTACGA
GATGACGATCTGCAGCAGGTTCAGCAGGGACTGGACGATGTGCGACGAGG
CGAACAAGCGCTGCCAGTAGGTCTGCTCCCTCGGCTCCGCCAGGGGAGCT
TCCGAGCAGCATCCTCCGGCTGCCGGAGCCTCGTTCTTCCTACGCTGCTC
CGCCGCCAGCTGCTCGCTTGCTCGACGGGCTTCCCTGCGCGCCAGTTGCT
GTCGCAGGAACTTGAGCGCCTCATACAGGAAGGACACCAGGAAGATGGCC
AGGGCGGAGAGCACGAACTCCGTCACAGTGGACGCCACCCATCCGCGCCA
CAAAATTCGCTCGCAGTGTCCAGCGTGGAACACCATGATCATAGGGCAGG
ACTTGGCCGTGCTGGTGCTGTCATCCGAGCCGTGATCCATGTCGACTGAT
AACT

BO11846.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG7459-PA 525 Ctr1B-RA 1..522 540..19 2610 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
Ctr1B-RA 953 CG7459-RA 126..647 540..19 2610 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:04:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8318437..8318899 481..19 2315 100 Minus
3R 32079331 3R 8317737..8317796 540..481 300 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:04:10 has no hits.

BO11846.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:26 Download gff for BO11846.3prime
Subject Subject Range Query Range Percent Splice Strand
Ctr1B-PA 1..525 18..540 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:46:53 Download gff for BO11846.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7459-PA 1..525 18..540 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:25:11 Download gff for BO11846.3prime
Subject Subject Range Query Range Percent Splice Strand
Ctr1B-RA 117..647 19..548 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:57:54 Download gff for BO11846.3prime
Subject Subject Range Query Range Percent Splice Strand
Ctr1B-RA 117..647 19..548 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:57:54 Download gff for BO11846.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8317728..8317796 481..548 94 -> Minus
3R 8318438..8318899 19..480 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:25:11 Download gff for BO11846.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4143450..4143518 481..548 94 -> Minus
arm_3R 4144160..4144621 19..480 100   Minus

BO11846.5prime Sequence

554 bp (553 high quality bases) assembled on 2006-04-19

> BO11846.5prime
GAAGTTATCAGTCGACATGGATCACGGCTCGGATGACAGCACCAGCACGG
CCAAGTCCTGCCCTATGATCATGGTGTTCCACGCTGGACACTGCGAGCGA
ATTTTGTGGCGCGGATGGGTGGCGTCCACTGTGACGGAGTTCGTGCTCTC
CGCCCTGGCCATCTTCCTGGTGTCCTTCCTGTATGAGGCGCTCAAGTTCC
TGCGACAGCAACTGGCGCGCAGGGAAGCCCGTCGAGCAAGCGAGCAGCTG
GCGGCGGAGCAGCGTAGGAAGAACGAGGCTCCGGCAGCCGGAGGATGCTG
CTCGGAAGCTCCCCTGGCGGAGCCGAGGGAGCAGACCTACTGGCAGCGCT
TGTTCGCCTCGTCGCACATCGTCCAGTCCCTGCTGAACCTGCTGCAGATC
GTCATCTCGTACCTGCTGATGCTGATCTTCATGACCTTCAACTACTGGCT
GTGCCTGGCAGTGATCCTGGGACTGGGTCTGGGCTACTTCTTCTTCGGCT
GGAACAAGAAGAATCCCGACGAGAGCGAGTGCTGTCCTGCAAGCTTTCTA
GACC

BO11846.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7459-PA 525 Ctr1B-RA 1..522 17..538 2610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:15:37
Subject Length Description Subject Range Query Range Score Percent Strand
Ctr1B-RA 953 CG7459-RA 126..647 17..538 2610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:15:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8318437..8318899 76..538 2315 100 Plus
3R 32079331 3R 8317737..8317796 17..76 300 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:15:34 has no hits.

BO11846.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:27 Download gff for BO11846.5prime
Subject Subject Range Query Range Percent Splice Strand
Ctr1B-PA 1..525 17..539 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:46:54 Download gff for BO11846.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7459-PA 1..525 17..539 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:57:18 Download gff for BO11846.5prime
Subject Subject Range Query Range Percent Splice Strand
Ctr1B-RA 117..647 9..538 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:21:41 Download gff for BO11846.5prime
Subject Subject Range Query Range Percent Splice Strand
Ctr1B-RA 117..647 9..538 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:21:41 Download gff for BO11846.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8317728..8317796 9..76 94 -> Plus
3R 8318438..8318899 77..538 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:57:18 Download gff for BO11846.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4143450..4143518 9..76 94 -> Plus
arm_3R 4144160..4144621 77..538 100   Plus

BO11846.complete Sequence

556 bp assembled on 2006-10-11

GenBank Submission: FJ632216

> BO11846.complete
GAAGTTATCAGTCGACATGGATCACGGCTCGGATGACAGCACCAGCACGG
CCAAGTCCTGCCCTATGATCATGGTGTTCCACGCTGGACACTGCGAGCGA
ATTTTGTGGCGCGGATGGGTGGCGTCCACTGTGACGGAGTTCGTGCTCTC
CGCCCTGGCCATCTTCCTGGTGTCCTTCCTGTATGAGGCGCTCAAGTTCC
TGCGACAGCAACTGGCGCGCAGGGAAGCCCGTCGAGCAAGCGAGCAGCTG
GCGGCGGAGCAGCGTAGGAAGAACGAGGCTCCGGCAGCCGGAGGATGCTG
CTCGGAAGCTCCCCTGGCGGAGCCGAGGGAGCAGACCTACTGGCAGCGCT
TGTTCGCCTCGTCGCACATCGTCCAGTCCCTGCTGAACCTGCTGCAGATC
GTCATCTCGTACCTGCTGATGCTGATCTTCATGACCTTCAACTACTGGCT
GTGCCTGGCAGTGATCCTGGGACTGGGTCTGGGCTACTTCTTCTTCGGCT
GGAACAAGAAGAATCCCGACGAGAGCGAGTGCTGTCCTGCAAGCTTTCTA
GACCAT

BO11846.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:55:57
Subject Length Description Subject Range Query Range Score Percent Strand
Ctr1B-RA 525 CG7459-PA 1..522 17..538 2610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:55:57
Subject Length Description Subject Range Query Range Score Percent Strand
Ctr1B-RA 953 CG7459-RA 126..647 17..538 2610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8318437..8318899 76..538 2315 100 Plus
3R 32079331 3R 8317737..8317796 17..76 300 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:55:56 has no hits.

BO11846.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:16 Download gff for BO11846.complete
Subject Subject Range Query Range Percent Splice Strand
Ctr1B-RA 1..525 17..539 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:13 Download gff for BO11846.complete
Subject Subject Range Query Range Percent Splice Strand
Ctr1B-RA 111..641 9..538 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:46:39 Download gff for BO11846.complete
Subject Subject Range Query Range Percent Splice Strand
Ctr1B-RA 126..647 17..540 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:16 Download gff for BO11846.complete
Subject Subject Range Query Range Percent Splice Strand
Ctr1B-RA 111..641 9..538 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:26 Download gff for BO11846.complete
Subject Subject Range Query Range Percent Splice Strand
Ctr1B-RA 126..647 17..540 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:26 Download gff for BO11846.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8317737..8317796 17..76 100 -> Plus
3R 8318438..8318899 77..540 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:46:39 Download gff for BO11846.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4143459..4143518 17..76 100 -> Plus
arm_3R 4144160..4144621 77..540 99   Plus

BO11846.pep Sequence

Translation from 16 to 556

> BO11846.pep
MDHGSDDSTSTAKSCPMIMVFHAGHCERILWRGWVASTVTEFVLSALAIF
LVSFLYEALKFLRQQLARREARRASEQLAAEQRRKNEAPAAGGCCSEAPL
AEPREQTYWQRLFASSHIVQSLLNLLQIVISYLLMLIFMTFNYWLCLAVI
LGLGLGYFFFGWNKKNPDESECCPASFLDH

BO11846.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:09
Subject Length Description Subject Range Query Range Score Percent Strand
Ctr1B-PA 174 CG7459-PA 1..174 1..174 920 100 Plus
Ctr1A-PB 231 CG3977-PB 66..220 2..164 276 37.4 Plus
Ctr1A-PA 231 CG3977-PA 66..220 2..164 276 37.4 Plus
Ctr1A-PD 241 CG3977-PD 66..230 2..164 274 36.5 Plus
Ctr1A-PC 241 CG3977-PC 66..230 2..164 274 36.5 Plus