Clone BO11848 Report

Search the DGRC for BO11848

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:118
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG17337-RA
Protein status:BO11848.pep:
Sequenced Size:1468

Clone Sequence Records

BO11848.3prime Sequence

635 bp (524 high quality bases) assembled on 2006-04-19

> BO11848.3prime
ATGGTCTAGAAAGCTTGCTAATTTTCCCACTTCGTGCAGATAGGCGCCAA
GAAGTTTAGTGCCTTCGATGTAATTGTAAATATCGATTTTCTCATTTTGA
GAATGGGCACCGTCGTCACATGCACCCACTGGCACAAGGATAACGTTTTT
ACCAGTGGCTTCCTGCAATGTTAACGTTACTGGAATAGATCCCCCTTCGC
GGGTCATATCTGGTTCCACATTGAAAACATGCTTTATGGCTCTTTTTGCA
GCCTCATAATGAGGATGGTTAGGGTCCTCAGTCCAGGGCTTGCCAGCTGA
GAGCATTGTAACCTTCATTTTGTTAGGAGATCCTCGCTCGGCCCATTTAT
CATTAAGGTATTTTACAACACACTCCTCAATATGCTTTGGATCTTGGTTG
GGGACAAGGCGAATAGAGAACTTACCAATAACCTTCTTCGGAATGACAGT
TTTTGCGCCTGGCTCATAAAATGCACCTTCAATTCCGTGAACAGAAAGAC
TGGGATAGCGCCACCTGGCTTGAAGTAACCTTGTTTTATCGCCATTATGC
GGCAGCTGTTCAACACCAATGTCTTTCTTGTACTCAGAAACTTCAAAGTC
TATGTTCTCATATATAGATTGCTCGTTCTTAATCT

BO11848.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG17337-PA 1437 CG17337-RA 818..1434 635..19 3085 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG17337-RC 1522 CG17337-RC 778..1394 635..19 3085 100 Minus
CG17337-RA 1661 CG17337-RA 917..1533 635..19 3085 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5699415..5699682 577..310 1340 100 Minus
2R 25286936 2R 5699735..5699988 314..61 1270 100 Minus
2R 25286936 2R 5699296..5699358 635..573 300 98.4 Minus
2R 25286936 2R 5700043..5700084 60..19 210 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:23:03 has no hits.

BO11848.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:30 Download gff for BO11848.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17337-PA 818..1437 15..635 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:46:58 Download gff for BO11848.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17337-PA 818..1437 15..635 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:38:53 Download gff for BO11848.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17337-RA 917..1536 15..635 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:19:10 Download gff for BO11848.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17337-RA 917..1536 15..635 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:19:10 Download gff for BO11848.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 5699296..5699353 578..635 100 -> Minus
2R 5699415..5699679 313..577 100 -> Minus
2R 5699737..5699988 61..312 100 -> Minus
2R 5700043..5700087 15..60 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:38:53 Download gff for BO11848.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1586801..1586858 578..635 100 -> Minus
arm_2R 1586920..1587184 313..577 100 -> Minus
arm_2R 1587242..1587493 61..312 100 -> Minus
arm_2R 1587548..1587592 15..60 95   Minus

BO11848.5prime Sequence

538 bp (514 high quality bases) assembled on 2006-04-19

> BO11848.5prime
GAAGTTATCAGTCGACATGCCCGAGTTATCAAGTGAACTTCAAAAATTCT
TTGCCTTTGTGGACGGCAAAAAAGAAGATTACATCGGGGCCCTAAAAACC
GTTGTGGGTATTCAGTCCGTATCAGCCTGGCCCGAAAAGCGAGGCGAGAT
CGGTCGTATGGTGGAATGGACCGCGGATCGGCTGAGGTCTCTGGGCGCCG
AGACAGAGCTGGCAGATGTGGGTCAGCAGACTTTGCCGAACGGCCAGATT
ATACCTCTACCAAAGGTTCTGCTGGGAACTTTGGGCAAAGACCCCTCTAA
GAAGACCGTGTTGGTCTATGGTCATTTGGATGTGCAGCCCGCCCTGAAGG
AAGATGGATGGAACACCAATCCCTTTGAGCTTACAGAGGTGGATGGAAAA
CTGTTTGGACGCGGGGCATCCGACGACAAGGGACCTGTTCTGTGCTGGAT
CCACGCTATCGAAGCTTATCAGAAGCTCAACATTGCACTGCCTGTGAATG
TTAAATTCGTATTTGAGGGAATGGAGGAAAACGGCAGC

BO11848.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG17337-PA 1437 CG17337-RA 1..522 17..538 2585 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG17337-RA 1661 CG17337-RA 100..621 17..538 2595 99.8 Plus
CG17337-RC 1522 CG17337-RC 1..482 57..538 2395 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 07:12:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5698456..5698939 55..538 2405 99.8 Plus
2R 25286936 2R 5697971..5698008 17..54 190 100 Plus
Blast to na_te.dros performed on 2015-02-10 07:12:45 has no hits.

BO11848.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:31 Download gff for BO11848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17337-PA 1..522 17..538 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:47:01 Download gff for BO11848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17337-PA 1..522 17..538 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 09:08:56 Download gff for BO11848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17337-RA 94..621 10..538 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:45:08 Download gff for BO11848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17337-RA 94..621 10..538 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:45:08 Download gff for BO11848.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 5697965..5698008 10..54 93 -> Plus
2R 5698456..5698939 55..538 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 09:08:56 Download gff for BO11848.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1585470..1585513 10..54 93 -> Plus
arm_2R 1585961..1586444 55..538 99   Plus

BO11848.complete Sequence

1468 bp assembled on 2008-01-17

GenBank Submission: FJ632217

> BO11848.complete
GAAGTTATCAGTCGACATGCCCGAGTTATCAAGTGAACTTCAAAAATTCT
TTGCCTTTGTGGACGGCAAAAAAGAAGATTACATCGGGGCCCTAAAAACC
GTTGTGGGTATTCAGTCCGTATCAGCCTGGCCCGAAAAGCGAGGCGAGAT
CGGTCGTATGGTGGAATGGACCGCGGATCGGCTGAGGTCTCTGGGCGCCG
AGACAGAGCTGGCAGATGTGGGTCAGCAGACTTTGCCGAACGGCCAGATT
ATACCTCTACCAAAGGTTCTGCTGGGAACTTTGGGCAAAGACCCCTCTAA
GAAGACCGTGTTGGTCTATGGTCATTTGGATGTGCAGCCCGCCCTGAAGG
AAGATGGATGGAACACCAATCCCTTTGAGCTTACAGAGGTGGATGGAAAA
CTGTTTGGACGCGGGGCATCCGACGACAAGGGACCTGTTCTGTGCTGGAT
CCACGCTATCGAAGCTTATCAGAAGCTCAACATTGCACTGCCTGTGAATG
TTAAATTCGTATTTGAGGGAATGGAGGAAAGCGGCAGCGAAGGCCTCGAT
GACTTGTTATTGGAACGTAAAGATAATTTCTTAGCGGATGTTGATTTTGT
TTGCATATCCGATAACTACTGGCTTGGAAAAAAACGCCCTTGCCTCACAT
ATGGGCTTCGCGGTTTGGCATACTTTCAAGTGGAGGTGGAATGCTCCAGC
AAAGACTTGCATAGTGGAGTTTTTGGGGGTACAGTTCACGAAGCAATGCC
GGATCTGTGTCATTTGCTGAGCATTCTTGTCGATAAAGATACAAATATCC
TAGTCCCTGGTGTGGATCGCGACGTCGCACCACAGATTAAGAACGAGCAA
TCTATATATGAGAACATAGACTTTGAAGTTTCTGAGTACAAGAAAGACAT
TGGTGTTGAACAGCTGCCGCATAATGGCGATAAAACAAGGTTACTTCAAG
CCAGGTGGCGCTATCCCAGTCTTTCTGTTCACGGAATTGAAGGTGCATTT
TATGAGCCAGGCGCAAAAACTGTCATTCCGAAGAAGGTTATTGGTAAGTT
CTCTATTCGCCTTGTCCCCAACCAAGATCCAAAGCATATTGAGGAGTGTG
TTGTAAAATACCTTAATGATAAATGGGCCGAGCGAGGATCTCCTAACAAA
ATGAAGGTTACAATGCTCTCAGCTGGCAAGCCCTGGACTGAGGACCCTAA
CCATCCTCATTATGAGGCTGCAAAAAGAGCCATAAAGCATGTTTTCAATG
TGGAACCAGATATGACCCGCGAAGGGGGATCTATTCCAGTAACGTTAACA
TTGCAGGAAGCCACTGGTAAAAACGTTATCCTTGTGCCAGTGGGTGCATG
TGACGACGGTGCCCATTCTCAAAATGAGAAAATCGATATTTACAATTACA
TCGAAGGCACTAAACTTCTTGGCGCCTATCTGCACGAAGTGGGAAAATTA
GCAAGCTTTCTAGACCAT

BO11848.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:55:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG17337-RA 1437 CG17337-PA 1..1434 17..1450 7170 100 Plus
CG17337-RC 1296 CG17337-PC 1..1293 158..1450 6465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG17337-RA 1661 CG17337-RA 100..1533 17..1450 7170 100 Plus
CG17337-RC 1522 CG17337-RC 1..1394 57..1450 6970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5698456..5699226 55..825 3855 100 Plus
2R 25286936 2R 5699415..5699682 892..1159 1340 100 Plus
2R 25286936 2R 5699735..5699988 1155..1408 1270 100 Plus
2R 25286936 2R 5699286..5699358 824..896 350 98.6 Plus
2R 25286936 2R 5700043..5700084 1409..1450 210 100 Plus
2R 25286936 2R 5697971..5698008 17..54 190 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:55:30 has no hits.

BO11848.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:20 Download gff for BO11848.complete
Subject Subject Range Query Range Percent Splice Strand
CG17337-RA 1..1437 17..1454 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:24 Download gff for BO11848.complete
Subject Subject Range Query Range Percent Splice Strand
CG17337-RA 118..1551 17..1452 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:38 Download gff for BO11848.complete
Subject Subject Range Query Range Percent Splice Strand
CG17337-RA 100..1533 17..1452 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:20 Download gff for BO11848.complete
Subject Subject Range Query Range Percent Splice Strand
CG17337-RA 112..1554 10..1454 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:02 Download gff for BO11848.complete
Subject Subject Range Query Range Percent Splice Strand
CG17337-RA 100..1533 17..1452 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:02 Download gff for BO11848.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5697971..5698008 17..54 100 -> Plus
2R 5698456..5699224 55..823 100 -> Plus
2R 5699286..5699353 824..891 100 -> Plus
2R 5699415..5699679 892..1156 100 -> Plus
2R 5699737..5699988 1157..1408 100 -> Plus
2R 5700043..5700084 1409..1452 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:38 Download gff for BO11848.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1586791..1586858 824..891 100 -> Plus
arm_2R 1587242..1587493 1157..1408 100 -> Plus
arm_2R 1587548..1587589 1409..1452 95   Plus
arm_2R 1585476..1585513 17..54 100 -> Plus
arm_2R 1585961..1586729 55..823 100 -> Plus
arm_2R 1586920..1587184 892..1156 100 -> Plus

BO11848.pep Sequence

Translation from 16 to 1468

> BO11848.pep
MPELSSELQKFFAFVDGKKEDYIGALKTVVGIQSVSAWPEKRGEIGRMVE
WTADRLRSLGAETELADVGQQTLPNGQIIPLPKVLLGTLGKDPSKKTVLV
YGHLDVQPALKEDGWNTNPFELTEVDGKLFGRGASDDKGPVLCWIHAIEA
YQKLNIALPVNVKFVFEGMEESGSEGLDDLLLERKDNFLADVDFVCISDN
YWLGKKRPCLTYGLRGLAYFQVEVECSSKDLHSGVFGGTVHEAMPDLCHL
LSILVDKDTNILVPGVDRDVAPQIKNEQSIYENIDFEVSEYKKDIGVEQL
PHNGDKTRLLQARWRYPSLSVHGIEGAFYEPGAKTVIPKKVIGKFSIRLV
PNQDPKHIEECVVKYLNDKWAERGSPNKMKVTMLSAGKPWTEDPNHPHYE
AAKRAIKHVFNVEPDMTREGGSIPVTLTLQEATGKNVILVPVGACDDGAH
SQNEKIDIYNYIEGTKLLGAYLHEVGKLASFLDH

BO11848.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:27:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG17337-PA 478 CG17337-PA 1..478 1..478 2532 100 Plus
CG17337-PC 431 CG17337-PC 1..431 48..478 2292 100 Plus