Clone Sequence Records
BO11848.3prime Sequence
635 bp (524 high quality bases) assembled on 2006-04-19
> BO11848.3prime
ATGGTCTAGAAAGCTTGCTAATTTTCCCACTTCGTGCAGATAGGCGCCAA
GAAGTTTAGTGCCTTCGATGTAATTGTAAATATCGATTTTCTCATTTTGA
GAATGGGCACCGTCGTCACATGCACCCACTGGCACAAGGATAACGTTTTT
ACCAGTGGCTTCCTGCAATGTTAACGTTACTGGAATAGATCCCCCTTCGC
GGGTCATATCTGGTTCCACATTGAAAACATGCTTTATGGCTCTTTTTGCA
GCCTCATAATGAGGATGGTTAGGGTCCTCAGTCCAGGGCTTGCCAGCTGA
GAGCATTGTAACCTTCATTTTGTTAGGAGATCCTCGCTCGGCCCATTTAT
CATTAAGGTATTTTACAACACACTCCTCAATATGCTTTGGATCTTGGTTG
GGGACAAGGCGAATAGAGAACTTACCAATAACCTTCTTCGGAATGACAGT
TTTTGCGCCTGGCTCATAAAATGCACCTTCAATTCCGTGAACAGAAAGAC
TGGGATAGCGCCACCTGGCTTGAAGTAACCTTGTTTTATCGCCATTATGC
GGCAGCTGTTCAACACCAATGTCTTTCTTGTACTCAGAAACTTCAAAGTC
TATGTTCTCATATATAGATTGCTCGTTCTTAATCT
BO11848.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17337-PA | 1437 | CG17337-RA | 818..1434 | 635..19 | 3085 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:23:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17337-RC | 1522 | CG17337-RC | 778..1394 | 635..19 | 3085 | 100 | Minus |
CG17337-RA | 1661 | CG17337-RA | 917..1533 | 635..19 | 3085 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:23:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5699415..5699682 | 577..310 | 1340 | 100 | Minus |
2R | 25286936 | 2R | 5699735..5699988 | 314..61 | 1270 | 100 | Minus |
2R | 25286936 | 2R | 5699296..5699358 | 635..573 | 300 | 98.4 | Minus |
2R | 25286936 | 2R | 5700043..5700084 | 60..19 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:23:03 has no hits.
BO11848.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:30 Download gff for
BO11848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17337-PA | 818..1437 | 15..635 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:46:58 Download gff for
BO11848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17337-PA | 818..1437 | 15..635 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:38:53 Download gff for
BO11848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17337-RA | 917..1536 | 15..635 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:19:10 Download gff for
BO11848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17337-RA | 917..1536 | 15..635 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:19:10 Download gff for
BO11848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5699296..5699353 | 578..635 | 100 | -> | Minus |
2R | 5699415..5699679 | 313..577 | 100 | -> | Minus |
2R | 5699737..5699988 | 61..312 | 100 | -> | Minus |
2R | 5700043..5700087 | 15..60 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:38:53 Download gff for
BO11848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1586801..1586858 | 578..635 | 100 | -> | Minus |
arm_2R | 1586920..1587184 | 313..577 | 100 | -> | Minus |
arm_2R | 1587242..1587493 | 61..312 | 100 | -> | Minus |
arm_2R | 1587548..1587592 | 15..60 | 95 | | Minus |
BO11848.5prime Sequence
538 bp (514 high quality bases) assembled on 2006-04-19
> BO11848.5prime
GAAGTTATCAGTCGACATGCCCGAGTTATCAAGTGAACTTCAAAAATTCT
TTGCCTTTGTGGACGGCAAAAAAGAAGATTACATCGGGGCCCTAAAAACC
GTTGTGGGTATTCAGTCCGTATCAGCCTGGCCCGAAAAGCGAGGCGAGAT
CGGTCGTATGGTGGAATGGACCGCGGATCGGCTGAGGTCTCTGGGCGCCG
AGACAGAGCTGGCAGATGTGGGTCAGCAGACTTTGCCGAACGGCCAGATT
ATACCTCTACCAAAGGTTCTGCTGGGAACTTTGGGCAAAGACCCCTCTAA
GAAGACCGTGTTGGTCTATGGTCATTTGGATGTGCAGCCCGCCCTGAAGG
AAGATGGATGGAACACCAATCCCTTTGAGCTTACAGAGGTGGATGGAAAA
CTGTTTGGACGCGGGGCATCCGACGACAAGGGACCTGTTCTGTGCTGGAT
CCACGCTATCGAAGCTTATCAGAAGCTCAACATTGCACTGCCTGTGAATG
TTAAATTCGTATTTGAGGGAATGGAGGAAAACGGCAGC
BO11848.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17337-PA | 1437 | CG17337-RA | 1..522 | 17..538 | 2585 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:12:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17337-RA | 1661 | CG17337-RA | 100..621 | 17..538 | 2595 | 99.8 | Plus |
CG17337-RC | 1522 | CG17337-RC | 1..482 | 57..538 | 2395 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 07:12:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5698456..5698939 | 55..538 | 2405 | 99.8 | Plus |
2R | 25286936 | 2R | 5697971..5698008 | 17..54 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 07:12:45 has no hits.
BO11848.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:31 Download gff for
BO11848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17337-PA | 1..522 | 17..538 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:47:01 Download gff for
BO11848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17337-PA | 1..522 | 17..538 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 09:08:56 Download gff for
BO11848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17337-RA | 94..621 | 10..538 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:45:08 Download gff for
BO11848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17337-RA | 94..621 | 10..538 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:45:08 Download gff for
BO11848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5697965..5698008 | 10..54 | 93 | -> | Plus |
2R | 5698456..5698939 | 55..538 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 09:08:56 Download gff for
BO11848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1585470..1585513 | 10..54 | 93 | -> | Plus |
arm_2R | 1585961..1586444 | 55..538 | 99 | | Plus |
BO11848.complete Sequence
1468 bp assembled on 2008-01-17
GenBank Submission: FJ632217
> BO11848.complete
GAAGTTATCAGTCGACATGCCCGAGTTATCAAGTGAACTTCAAAAATTCT
TTGCCTTTGTGGACGGCAAAAAAGAAGATTACATCGGGGCCCTAAAAACC
GTTGTGGGTATTCAGTCCGTATCAGCCTGGCCCGAAAAGCGAGGCGAGAT
CGGTCGTATGGTGGAATGGACCGCGGATCGGCTGAGGTCTCTGGGCGCCG
AGACAGAGCTGGCAGATGTGGGTCAGCAGACTTTGCCGAACGGCCAGATT
ATACCTCTACCAAAGGTTCTGCTGGGAACTTTGGGCAAAGACCCCTCTAA
GAAGACCGTGTTGGTCTATGGTCATTTGGATGTGCAGCCCGCCCTGAAGG
AAGATGGATGGAACACCAATCCCTTTGAGCTTACAGAGGTGGATGGAAAA
CTGTTTGGACGCGGGGCATCCGACGACAAGGGACCTGTTCTGTGCTGGAT
CCACGCTATCGAAGCTTATCAGAAGCTCAACATTGCACTGCCTGTGAATG
TTAAATTCGTATTTGAGGGAATGGAGGAAAGCGGCAGCGAAGGCCTCGAT
GACTTGTTATTGGAACGTAAAGATAATTTCTTAGCGGATGTTGATTTTGT
TTGCATATCCGATAACTACTGGCTTGGAAAAAAACGCCCTTGCCTCACAT
ATGGGCTTCGCGGTTTGGCATACTTTCAAGTGGAGGTGGAATGCTCCAGC
AAAGACTTGCATAGTGGAGTTTTTGGGGGTACAGTTCACGAAGCAATGCC
GGATCTGTGTCATTTGCTGAGCATTCTTGTCGATAAAGATACAAATATCC
TAGTCCCTGGTGTGGATCGCGACGTCGCACCACAGATTAAGAACGAGCAA
TCTATATATGAGAACATAGACTTTGAAGTTTCTGAGTACAAGAAAGACAT
TGGTGTTGAACAGCTGCCGCATAATGGCGATAAAACAAGGTTACTTCAAG
CCAGGTGGCGCTATCCCAGTCTTTCTGTTCACGGAATTGAAGGTGCATTT
TATGAGCCAGGCGCAAAAACTGTCATTCCGAAGAAGGTTATTGGTAAGTT
CTCTATTCGCCTTGTCCCCAACCAAGATCCAAAGCATATTGAGGAGTGTG
TTGTAAAATACCTTAATGATAAATGGGCCGAGCGAGGATCTCCTAACAAA
ATGAAGGTTACAATGCTCTCAGCTGGCAAGCCCTGGACTGAGGACCCTAA
CCATCCTCATTATGAGGCTGCAAAAAGAGCCATAAAGCATGTTTTCAATG
TGGAACCAGATATGACCCGCGAAGGGGGATCTATTCCAGTAACGTTAACA
TTGCAGGAAGCCACTGGTAAAAACGTTATCCTTGTGCCAGTGGGTGCATG
TGACGACGGTGCCCATTCTCAAAATGAGAAAATCGATATTTACAATTACA
TCGAAGGCACTAAACTTCTTGGCGCCTATCTGCACGAAGTGGGAAAATTA
GCAAGCTTTCTAGACCAT
BO11848.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:55:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17337-RA | 1437 | CG17337-PA | 1..1434 | 17..1450 | 7170 | 100 | Plus |
CG17337-RC | 1296 | CG17337-PC | 1..1293 | 158..1450 | 6465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:55:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17337-RA | 1661 | CG17337-RA | 100..1533 | 17..1450 | 7170 | 100 | Plus |
CG17337-RC | 1522 | CG17337-RC | 1..1394 | 57..1450 | 6970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:55:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5698456..5699226 | 55..825 | 3855 | 100 | Plus |
2R | 25286936 | 2R | 5699415..5699682 | 892..1159 | 1340 | 100 | Plus |
2R | 25286936 | 2R | 5699735..5699988 | 1155..1408 | 1270 | 100 | Plus |
2R | 25286936 | 2R | 5699286..5699358 | 824..896 | 350 | 98.6 | Plus |
2R | 25286936 | 2R | 5700043..5700084 | 1409..1450 | 210 | 100 | Plus |
2R | 25286936 | 2R | 5697971..5698008 | 17..54 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:55:30 has no hits.
BO11848.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:20 Download gff for
BO11848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17337-RA | 1..1437 | 17..1454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:24 Download gff for
BO11848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17337-RA | 118..1551 | 17..1452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:38 Download gff for
BO11848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17337-RA | 100..1533 | 17..1452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:20 Download gff for
BO11848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17337-RA | 112..1554 | 10..1454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:02 Download gff for
BO11848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17337-RA | 100..1533 | 17..1452 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:02 Download gff for
BO11848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5697971..5698008 | 17..54 | 100 | -> | Plus |
2R | 5698456..5699224 | 55..823 | 100 | -> | Plus |
2R | 5699286..5699353 | 824..891 | 100 | -> | Plus |
2R | 5699415..5699679 | 892..1156 | 100 | -> | Plus |
2R | 5699737..5699988 | 1157..1408 | 100 | -> | Plus |
2R | 5700043..5700084 | 1409..1452 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:38 Download gff for
BO11848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1586791..1586858 | 824..891 | 100 | -> | Plus |
arm_2R | 1587242..1587493 | 1157..1408 | 100 | -> | Plus |
arm_2R | 1587548..1587589 | 1409..1452 | 95 | | Plus |
arm_2R | 1585476..1585513 | 17..54 | 100 | -> | Plus |
arm_2R | 1585961..1586729 | 55..823 | 100 | -> | Plus |
arm_2R | 1586920..1587184 | 892..1156 | 100 | -> | Plus |
BO11848.pep Sequence
Translation from 16 to 1468
> BO11848.pep
MPELSSELQKFFAFVDGKKEDYIGALKTVVGIQSVSAWPEKRGEIGRMVE
WTADRLRSLGAETELADVGQQTLPNGQIIPLPKVLLGTLGKDPSKKTVLV
YGHLDVQPALKEDGWNTNPFELTEVDGKLFGRGASDDKGPVLCWIHAIEA
YQKLNIALPVNVKFVFEGMEESGSEGLDDLLLERKDNFLADVDFVCISDN
YWLGKKRPCLTYGLRGLAYFQVEVECSSKDLHSGVFGGTVHEAMPDLCHL
LSILVDKDTNILVPGVDRDVAPQIKNEQSIYENIDFEVSEYKKDIGVEQL
PHNGDKTRLLQARWRYPSLSVHGIEGAFYEPGAKTVIPKKVIGKFSIRLV
PNQDPKHIEECVVKYLNDKWAERGSPNKMKVTMLSAGKPWTEDPNHPHYE
AAKRAIKHVFNVEPDMTREGGSIPVTLTLQEATGKNVILVPVGACDDGAH
SQNEKIDIYNYIEGTKLLGAYLHEVGKLASFLDH
BO11848.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:27:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17337-PA | 478 | CG17337-PA | 1..478 | 1..478 | 2532 | 100 | Plus |
CG17337-PC | 431 | CG17337-PC | 1..431 | 48..478 | 2292 | 100 | Plus |