Clone BO11852 Report

Search the DGRC for BO11852

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:118
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG5491-RA
Protein status:BO11852.pep: validated full length
Sequenced Size:1018

Clone Sequence Records

BO11852.5prime Sequence

873 bp (772 high quality bases) assembled on 2006-04-19

> BO11852.5prime
GAAGTTATCAGTCGACATGGCCGCAAATATAGCCGCCGCTGCTGCAGCTG
CCCAAGAAGTGGATCCCGTGCTGAAGAAGGCCATCAAGTTGCTGCACTCG
AGTAATCCCACCTCGGCGGCCGAACTGCGTCTGCTTTTGGACGAGGCTTT
GAAGGCGCGTTTTGGTCCGGAGAAAAGTTTGACCAACAACATGACGCCAC
GGATGCTGGAGGATGAAGCGAACTTTTCCGGACGTGCTGCCACGCCCCCG
CAGCAGCCCATCAATGCGGACGAGATCATCAATTTGACCAACTCACCGGA
CAAGGAGCCCTCCGATTCGGTGGACACGATTGCGGATTCGGATGACGGTC
TAAGCGCCGTGGGAATAGTTAACACCGGTGACACCGGCGACTTTGGCGAC
CTCAATTGCTGCGTGTGCGGCGAGATGGTTTTCACGGCCACCAATCGGCT
GATTGAGTGCTCCAAGTGCGGTGCCATGTACCATCAGGAGTGCCACAAGC
CGCCCATAACCAAGGAGGAGGCGGCCGATGACCAGGAGCAGAACTGGCAG
TGCGACACGTGCTGCAACAAGCCAACGAGCAGCGGGAGGACAACATCCTC
TGCAGCGGCCGTAACGCCAACTGTCTTCATAGCCGACGAACCCATGCCGT
TGACCAGCAAAGCCAAATCGTCGGTCGCGTCGTCGCGCTCATCGAACTCT
TCCAACTCCTCGTCACCCTTCTACCGGCCCGAGCCCAGCAGTTCCACGAA
TGCCAGCAGCAGTAGCAGCAGCAAGCATGGCCACAAGTCCTCCTCTTCGT
CGTCGTCCAAATCGCACAAGGAAGAACGATCCCTCTAATCCACGGCGGCG
TTCTCTCTTAGCGCCATCGGCGG

BO11852.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG5491-PA 987 CG5491-RA 1..816 17..832 4080 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:51:25
Subject Length Description Subject Range Query Range Score Percent Strand
IntS12-RA 1184 CG5491-RA 95..951 17..873 4210 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26863470..26864326 17..873 4180 99.2 Plus
Blast to na_te.dros performed 2015-02-13 09:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 971..1001 744..774 110 83.9 Plus

BO11852.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:38 Download gff for BO11852.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5491-PA 1..857 17..873 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:47:09 Download gff for BO11852.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5491-PA 1..857 17..873 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:46:48 Download gff for BO11852.5prime
Subject Subject Range Query Range Percent Splice Strand
IntS12-RA 95..951 17..873 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:20:38 Download gff for BO11852.5prime
Subject Subject Range Query Range Percent Splice Strand
IntS12-RA 95..951 17..873 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:20:38 Download gff for BO11852.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26863470..26864326 17..873 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:46:48 Download gff for BO11852.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22689192..22690048 17..873 99   Plus

BO11852.3prime Sequence

667 bp (611 high quality bases) assembled on 2006-04-19

> BO11852.3prime
ATGGTCTAGAAAGCTTGCCTGCTTGGATCTGCGCTTGCTGCTGCTGCCGC
TTTCGTGATGCTTGGAGGAACTGCTCTTGGAGCTGGATTTGGTGCTGGAG
CCGCTGCGTCGCGATGAGGTGCCACTGCTGTTGTGCTTCTCCATTCCGCC
GATGGCGCTAAGAGAAGACGCCGCCGTGGACTTAGAGGATCGTTCTTCCT
TGTGCGATTTGGACGACGACGAAGAGGAGGACTTGTGGCCATGCTTGCTG
CTGCTACTGCTGCTGGCATTCGTGGAACTGCTGGGCTCGGGCCGGTAGAA
GGGTGACGAGGAGTTGGAAGAGTTCGATGAGCGCGACGACGCGACCGACG
ATTTGGCTTTGCTGGTCAACGGCATGGGTTCGTCGGCTATGAAGACAGTT
GGCGTTACGGCCGCTGCAGAGGATGTTGTCCTCCCGCTGCTCGTTGGCTT
GTTGCAGCACGTGTCGCACTGCCAGTTCTGCTCCTGGTCATCGGCCGCCT
CCTCCTTGGTTATGGGCGGCTTGTGGCACTCCTGATGGTACATGGCACCG
CACTTGGAGCACTCAATCAGCCGATTGGTGGCCGTGAAAACCATCTCGCC
GCACACGCAGCAATTGAGGTCGCCAAAGTCGCCGGTGTCACCGGTGTTTA
CTATTCCCACGGCGCTT

BO11852.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG5491-PA 987 CG5491-RA 336..984 667..19 3220 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
IntS12-RA 1184 CG5491-RA 430..1078 667..19 3230 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26863805..26864453 667..19 3230 99.8 Minus
Blast to na_te.dros performed 2015-02-11 11:25:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2420 140..35 142 63.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6736..6820 107..23 137 65.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2531 283..71 132 56.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6825 140..30 131 64.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2372 95..29 119 64.2 Minus
gypsy11 4428 gypsy11 GYPSY11 4428bp 971..1001 275..245 110 83.9 Minus

BO11852.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:37 Download gff for BO11852.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5491-PA 336..987 15..667 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:47:09 Download gff for BO11852.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5491-PA 336..987 15..667 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:39:31 Download gff for BO11852.3prime
Subject Subject Range Query Range Percent Splice Strand
IntS12-RA 430..1084 10..667 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:40:13 Download gff for BO11852.3prime
Subject Subject Range Query Range Percent Splice Strand
IntS12-RA 430..1084 10..667 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:40:13 Download gff for BO11852.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26863805..26864459 10..667 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:39:31 Download gff for BO11852.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22689527..22690181 10..667 99   Minus

BO11852.complete Sequence

1018 bp assembled on 2006-10-11

GenBank Submission: FJ638690

> BO11852.complete
GAAGTTATCAGTCGACATGGCCGCAAATATAGCCGCCGCTGCTGCAGCTG
CCCAAGAAGTGGATCCCGTGCTGAAGAAGGCCATCAAGTTGCTGCACTCG
AGTAATCCCACCTCGGCGGCCGAACTGCGTCTGCTTTTGGACGAGGCTTT
GAAGGCGCGTTTTGGTCCGGAGAAAAGTTTGACCAACAACATGACGCCAC
GGATGCTGGAGGATGAAGCGAACTTTTCCGGACGTGCTGCCACGCCCCCG
CAGCAGCCCATCAATGCGGACGAGATCATCAATTTGACCAACTCACCGGA
CAAGGAGCCCTCCGATTCGGTGGACACGATTGCGGATTCGGATGACGGTC
TAAGCGCCGTGGGAATAGTTAACACCGGTGACACCGGCGACTTTGGCGAC
CTCAATTGCTGCGTGTGCGGCGAGATGGTTTTCACGGCCACCAATCGGCT
GATTGAGTGCTCCAAGTGCGGTGCCATGTACCATCAGGAGTGCCACAAGC
CGCCCATAACCAAGGAGGAGGCGGCCGATGACCAGGAGCAGAACTGGCAG
TGCGACACGTGCTGCAACAAGCCAACGAGCAGCGGGAGGACAACATCCTC
TGCAGCGGCCGTAACGCCAACTGTCTTCATAGCCGACGAACCCATGCCGT
TGACCAGCAAAGCCAAATCGTCGGTCGCGTCGTCGCGCTCATCGAACTCT
TCCAACTCCTCGTCACCCTTCTACCGGCCCGAGCCCAGCAGTTCCACGAA
TGCCAGCAGCAGTAGCAGCAGCAAGCATGGCCACAAGTCCTCCTCTTCGT
CGTCGTCCAAATCGCACAAGGAAGAACGATCCTCTAAGTCCACGGCGGCG
TCTTCTCTTAGCGCCATCGGCGGAATGGAGAAGCACAACAGCAGTGGCAC
CTCATCGCGACGCAGCGGCTCCAGCACCAAATCCAGCTCCAAGAGCAGTT
CCTCCAAGCATCACGAAAGCGGCAGCAGCAGCAAGCGCAGATCCAAGCAG
GCAAGCTTTCTAGACCAT

BO11852.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:51:56
Subject Length Description Subject Range Query Range Score Percent Strand
IntS12-RA 987 CG5491-PA 1..984 17..1000 4920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:51:58
Subject Length Description Subject Range Query Range Score Percent Strand
IntS12-RA 1184 CG5491-RA 95..1078 17..1000 4920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26863470..26864453 17..1000 4920 100 Plus
Blast to na_te.dros performed 2014-11-28 00:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2420 879..984 142 63.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6736..6820 912..996 137 65.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2531 736..948 132 56.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6825 879..989 131 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2372 924..990 119 64.2 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 971..1001 744..774 110 83.9 Plus

BO11852.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:18 Download gff for BO11852.complete
Subject Subject Range Query Range Percent Splice Strand
CG5491-RA 1..987 17..1004 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:15 Download gff for BO11852.complete
Subject Subject Range Query Range Percent Splice Strand
CG5491-RA 73..1062 17..1009 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:11 Download gff for BO11852.complete
Subject Subject Range Query Range Percent Splice Strand
IntS12-RA 95..1078 17..1002 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:18 Download gff for BO11852.complete
Subject Subject Range Query Range Percent Splice Strand
CG5491-RA 73..1062 17..1009 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:58 Download gff for BO11852.complete
Subject Subject Range Query Range Percent Splice Strand
IntS12-RA 95..1078 17..1002 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:58 Download gff for BO11852.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26863470..26864453 17..1002 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:11 Download gff for BO11852.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22689192..22690175 17..1002 99   Plus

BO11852.pep Sequence

Translation from 16 to 1018

> BO11852.pep
MAANIAAAAAAAQEVDPVLKKAIKLLHSSNPTSAAELRLLLDEALKARFG
PEKSLTNNMTPRMLEDEANFSGRAATPPQQPINADEIINLTNSPDKEPSD
SVDTIADSDDGLSAVGIVNTGDTGDFGDLNCCVCGEMVFTATNRLIECSK
CGAMYHQECHKPPITKEEAADDQEQNWQCDTCCNKPTSSGRTTSSAAAVT
PTVFIADEPMPLTSKAKSSVASSRSSNSSNSSSPFYRPEPSSSTNASSSS
SSKHGHKSSSSSSSKSHKEERSSKSTAASSLSAIGGMEKHNSSGTSSRRS
GSSTKSSSKSSSSKHHESGSSSKRRSKQASFLDH

BO11852.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:05
Subject Length Description Subject Range Query Range Score Percent Strand
IntS12-PA 328 CG5491-PA 1..328 1..328 1665 100 Plus
PNUTS-PA 628 CG33526-PA 296..428 172..323 184 34.9 Plus
PNUTS-PB 628 CG33526-PB 296..428 172..323 184 34.9 Plus
PNUTS-PE 1135 CG33526-PE 296..428 172..323 184 34.9 Plus
PNUTS-PD 1135 CG33526-PD 296..428 172..323 184 34.9 Plus
PNUTS-PA 628 CG33526-PA 260..411 189..330 171 36.2 Plus
PNUTS-PB 628 CG33526-PB 260..411 189..330 171 36.2 Plus
PNUTS-PE 1135 CG33526-PE 260..411 189..330 171 36.2 Plus
PNUTS-PA 628 CG33526-PA 305..425 213..327 170 43 Plus
PNUTS-PB 628 CG33526-PB 305..425 213..327 170 43 Plus
PNUTS-PE 1135 CG33526-PE 305..425 213..327 170 43 Plus