Clone Sequence Records
BO11852.5prime Sequence
873 bp (772 high quality bases) assembled on 2006-04-19
> BO11852.5prime
GAAGTTATCAGTCGACATGGCCGCAAATATAGCCGCCGCTGCTGCAGCTG
CCCAAGAAGTGGATCCCGTGCTGAAGAAGGCCATCAAGTTGCTGCACTCG
AGTAATCCCACCTCGGCGGCCGAACTGCGTCTGCTTTTGGACGAGGCTTT
GAAGGCGCGTTTTGGTCCGGAGAAAAGTTTGACCAACAACATGACGCCAC
GGATGCTGGAGGATGAAGCGAACTTTTCCGGACGTGCTGCCACGCCCCCG
CAGCAGCCCATCAATGCGGACGAGATCATCAATTTGACCAACTCACCGGA
CAAGGAGCCCTCCGATTCGGTGGACACGATTGCGGATTCGGATGACGGTC
TAAGCGCCGTGGGAATAGTTAACACCGGTGACACCGGCGACTTTGGCGAC
CTCAATTGCTGCGTGTGCGGCGAGATGGTTTTCACGGCCACCAATCGGCT
GATTGAGTGCTCCAAGTGCGGTGCCATGTACCATCAGGAGTGCCACAAGC
CGCCCATAACCAAGGAGGAGGCGGCCGATGACCAGGAGCAGAACTGGCAG
TGCGACACGTGCTGCAACAAGCCAACGAGCAGCGGGAGGACAACATCCTC
TGCAGCGGCCGTAACGCCAACTGTCTTCATAGCCGACGAACCCATGCCGT
TGACCAGCAAAGCCAAATCGTCGGTCGCGTCGTCGCGCTCATCGAACTCT
TCCAACTCCTCGTCACCCTTCTACCGGCCCGAGCCCAGCAGTTCCACGAA
TGCCAGCAGCAGTAGCAGCAGCAAGCATGGCCACAAGTCCTCCTCTTCGT
CGTCGTCCAAATCGCACAAGGAAGAACGATCCCTCTAATCCACGGCGGCG
TTCTCTCTTAGCGCCATCGGCGG
BO11852.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5491-PA | 987 | CG5491-RA | 1..816 | 17..832 | 4080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:51:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
IntS12-RA | 1184 | CG5491-RA | 95..951 | 17..873 | 4210 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:51:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26863470..26864326 | 17..873 | 4180 | 99.2 | Plus |
Blast to na_te.dros performed 2015-02-13 09:51:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 971..1001 | 744..774 | 110 | 83.9 | Plus |
BO11852.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:38 Download gff for
BO11852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5491-PA | 1..857 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:47:09 Download gff for
BO11852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5491-PA | 1..857 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:46:48 Download gff for
BO11852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IntS12-RA | 95..951 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:20:38 Download gff for
BO11852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IntS12-RA | 95..951 | 17..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:20:38 Download gff for
BO11852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26863470..26864326 | 17..873 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:46:48 Download gff for
BO11852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22689192..22690048 | 17..873 | 99 | | Plus |
BO11852.3prime Sequence
667 bp (611 high quality bases) assembled on 2006-04-19
> BO11852.3prime
ATGGTCTAGAAAGCTTGCCTGCTTGGATCTGCGCTTGCTGCTGCTGCCGC
TTTCGTGATGCTTGGAGGAACTGCTCTTGGAGCTGGATTTGGTGCTGGAG
CCGCTGCGTCGCGATGAGGTGCCACTGCTGTTGTGCTTCTCCATTCCGCC
GATGGCGCTAAGAGAAGACGCCGCCGTGGACTTAGAGGATCGTTCTTCCT
TGTGCGATTTGGACGACGACGAAGAGGAGGACTTGTGGCCATGCTTGCTG
CTGCTACTGCTGCTGGCATTCGTGGAACTGCTGGGCTCGGGCCGGTAGAA
GGGTGACGAGGAGTTGGAAGAGTTCGATGAGCGCGACGACGCGACCGACG
ATTTGGCTTTGCTGGTCAACGGCATGGGTTCGTCGGCTATGAAGACAGTT
GGCGTTACGGCCGCTGCAGAGGATGTTGTCCTCCCGCTGCTCGTTGGCTT
GTTGCAGCACGTGTCGCACTGCCAGTTCTGCTCCTGGTCATCGGCCGCCT
CCTCCTTGGTTATGGGCGGCTTGTGGCACTCCTGATGGTACATGGCACCG
CACTTGGAGCACTCAATCAGCCGATTGGTGGCCGTGAAAACCATCTCGCC
GCACACGCAGCAATTGAGGTCGCCAAAGTCGCCGGTGTCACCGGTGTTTA
CTATTCCCACGGCGCTT
BO11852.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5491-PA | 987 | CG5491-RA | 336..984 | 667..19 | 3220 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:25:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
IntS12-RA | 1184 | CG5491-RA | 430..1078 | 667..19 | 3230 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:25:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26863805..26864453 | 667..19 | 3230 | 99.8 | Minus |
Blast to na_te.dros performed 2015-02-11 11:25:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2420 | 140..35 | 142 | 63.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6820 | 107..23 | 137 | 65.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2531 | 283..71 | 132 | 56.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6825 | 140..30 | 131 | 64.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2372 | 95..29 | 119 | 64.2 | Minus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 971..1001 | 275..245 | 110 | 83.9 | Minus |
BO11852.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:37 Download gff for
BO11852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5491-PA | 336..987 | 15..667 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:47:09 Download gff for
BO11852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5491-PA | 336..987 | 15..667 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:39:31 Download gff for
BO11852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IntS12-RA | 430..1084 | 10..667 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:40:13 Download gff for
BO11852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IntS12-RA | 430..1084 | 10..667 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:40:13 Download gff for
BO11852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26863805..26864459 | 10..667 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:39:31 Download gff for
BO11852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22689527..22690181 | 10..667 | 99 | | Minus |
BO11852.complete Sequence
1018 bp assembled on 2006-10-11
GenBank Submission: FJ638690
> BO11852.complete
GAAGTTATCAGTCGACATGGCCGCAAATATAGCCGCCGCTGCTGCAGCTG
CCCAAGAAGTGGATCCCGTGCTGAAGAAGGCCATCAAGTTGCTGCACTCG
AGTAATCCCACCTCGGCGGCCGAACTGCGTCTGCTTTTGGACGAGGCTTT
GAAGGCGCGTTTTGGTCCGGAGAAAAGTTTGACCAACAACATGACGCCAC
GGATGCTGGAGGATGAAGCGAACTTTTCCGGACGTGCTGCCACGCCCCCG
CAGCAGCCCATCAATGCGGACGAGATCATCAATTTGACCAACTCACCGGA
CAAGGAGCCCTCCGATTCGGTGGACACGATTGCGGATTCGGATGACGGTC
TAAGCGCCGTGGGAATAGTTAACACCGGTGACACCGGCGACTTTGGCGAC
CTCAATTGCTGCGTGTGCGGCGAGATGGTTTTCACGGCCACCAATCGGCT
GATTGAGTGCTCCAAGTGCGGTGCCATGTACCATCAGGAGTGCCACAAGC
CGCCCATAACCAAGGAGGAGGCGGCCGATGACCAGGAGCAGAACTGGCAG
TGCGACACGTGCTGCAACAAGCCAACGAGCAGCGGGAGGACAACATCCTC
TGCAGCGGCCGTAACGCCAACTGTCTTCATAGCCGACGAACCCATGCCGT
TGACCAGCAAAGCCAAATCGTCGGTCGCGTCGTCGCGCTCATCGAACTCT
TCCAACTCCTCGTCACCCTTCTACCGGCCCGAGCCCAGCAGTTCCACGAA
TGCCAGCAGCAGTAGCAGCAGCAAGCATGGCCACAAGTCCTCCTCTTCGT
CGTCGTCCAAATCGCACAAGGAAGAACGATCCTCTAAGTCCACGGCGGCG
TCTTCTCTTAGCGCCATCGGCGGAATGGAGAAGCACAACAGCAGTGGCAC
CTCATCGCGACGCAGCGGCTCCAGCACCAAATCCAGCTCCAAGAGCAGTT
CCTCCAAGCATCACGAAAGCGGCAGCAGCAGCAAGCGCAGATCCAAGCAG
GCAAGCTTTCTAGACCAT
BO11852.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:51:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
IntS12-RA | 987 | CG5491-PA | 1..984 | 17..1000 | 4920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:51:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
IntS12-RA | 1184 | CG5491-RA | 95..1078 | 17..1000 | 4920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:51:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26863470..26864453 | 17..1000 | 4920 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:51:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2420 | 879..984 | 142 | 63.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6820 | 912..996 | 137 | 65.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2531 | 736..948 | 132 | 56.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6825 | 879..989 | 131 | 64.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2372 | 924..990 | 119 | 64.2 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 971..1001 | 744..774 | 110 | 83.9 | Plus |
BO11852.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:18 Download gff for
BO11852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5491-RA | 1..987 | 17..1004 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:15 Download gff for
BO11852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5491-RA | 73..1062 | 17..1009 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:11 Download gff for
BO11852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IntS12-RA | 95..1078 | 17..1002 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:18 Download gff for
BO11852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5491-RA | 73..1062 | 17..1009 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:58 Download gff for
BO11852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IntS12-RA | 95..1078 | 17..1002 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:58 Download gff for
BO11852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26863470..26864453 | 17..1002 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:11 Download gff for
BO11852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22689192..22690175 | 17..1002 | 99 | | Plus |
BO11852.pep Sequence
Translation from 16 to 1018
> BO11852.pep
MAANIAAAAAAAQEVDPVLKKAIKLLHSSNPTSAAELRLLLDEALKARFG
PEKSLTNNMTPRMLEDEANFSGRAATPPQQPINADEIINLTNSPDKEPSD
SVDTIADSDDGLSAVGIVNTGDTGDFGDLNCCVCGEMVFTATNRLIECSK
CGAMYHQECHKPPITKEEAADDQEQNWQCDTCCNKPTSSGRTTSSAAAVT
PTVFIADEPMPLTSKAKSSVASSRSSNSSNSSSPFYRPEPSSSTNASSSS
SSKHGHKSSSSSSSKSHKEERSSKSTAASSLSAIGGMEKHNSSGTSSRRS
GSSTKSSSKSSSSKHHESGSSSKRRSKQASFLDH
BO11852.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
IntS12-PA | 328 | CG5491-PA | 1..328 | 1..328 | 1665 | 100 | Plus |
PNUTS-PA | 628 | CG33526-PA | 296..428 | 172..323 | 184 | 34.9 | Plus |
PNUTS-PB | 628 | CG33526-PB | 296..428 | 172..323 | 184 | 34.9 | Plus |
PNUTS-PE | 1135 | CG33526-PE | 296..428 | 172..323 | 184 | 34.9 | Plus |
PNUTS-PD | 1135 | CG33526-PD | 296..428 | 172..323 | 184 | 34.9 | Plus |
PNUTS-PA | 628 | CG33526-PA | 260..411 | 189..330 | 171 | 36.2 | Plus |
PNUTS-PB | 628 | CG33526-PB | 260..411 | 189..330 | 171 | 36.2 | Plus |
PNUTS-PE | 1135 | CG33526-PE | 260..411 | 189..330 | 171 | 36.2 | Plus |
PNUTS-PA | 628 | CG33526-PA | 305..425 | 213..327 | 170 | 43 | Plus |
PNUTS-PB | 628 | CG33526-PB | 305..425 | 213..327 | 170 | 43 | Plus |
PNUTS-PE | 1135 | CG33526-PE | 305..425 | 213..327 | 170 | 43 | Plus |