Clone Sequence Records
BO11853.5prime Sequence
455 bp (449 high quality bases) assembled on 2006-04-19
> BO11853.5prime
GAAGTTATCAGTCGACATGGCCAAGTATATCGCCCAGATCATCGTGTTGG
GCGCCCAGGCAGTGGGAAGAGCCTTTACCAAGGCGCTGCGCCAGGAGATC
GCCGCATCTCAGGAAGCAGCACGACGGGCGGGTGGTGGCAAGCAGGGCGA
CAAGAGCGCCGAGTCCAACCTGCGCACAGGCATGACGCTGGAGGAAGCCA
AGCAGATCCTGAATATAGATGACCCCAAAAACGTGGACGCTATCACCAAG
AACTACGAGCATCTGTTTCAAGTCAACGAACGCTCCAAAGGCGGCTCCTT
CTATATCCAGTCAAAGGTTTTCCGGGCGAAAGAGCGGCTGGACCATGAGA
TTAAGGCCCATGAGCAGCCGAGGTCGTCAAATACGGAAGCAGCGCAAGAT
ACGGCGGAGGAGTCTCAGAGCAGATCGCGGCAGCGACGCGCAAGCTTTCT
AGACC
BO11853.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5268-PA | 426 | blp-RA | 1..423 | 17..439 | 2115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:04:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blp-RB | 964 | CG5268-RB | 235..658 | 16..439 | 2120 | 100 | Plus |
blp-RA | 955 | CG5268-RA | 226..649 | 16..439 | 2120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:04:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15934372..15934634 | 177..439 | 1315 | 100 | Plus |
3R | 32079331 | 3R | 15934151..15934315 | 16..180 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:04:32 has no hits.
BO11853.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:40 Download gff for
BO11853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blp-PA | 1..426 | 17..442 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:47:13 Download gff for
BO11853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5268-PA | 1..426 | 17..442 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:54:14 Download gff for
BO11853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blp-RA | 235..661 | 13..439 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:38:03 Download gff for
BO11853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blp-RA | 223..649 | 13..439 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:38:03 Download gff for
BO11853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15934148..15934314 | 13..179 | 99 | -> | Plus |
3R | 15934375..15934634 | 180..439 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:54:14 Download gff for
BO11853.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11759870..11760036 | 13..179 | 99 | -> | Plus |
arm_3R | 11760097..11760356 | 180..439 | 100 | | Plus |
BO11853.3prime Sequence
455 bp (454 high quality bases) assembled on 2006-04-19
> BO11853.3prime
ATGGTCTAGAAAGCTTGCGCGTCGCTGCCGCGATCTGCTCTGAGACTCCT
CCGCCGTATCTTGCGCTGCTTCCGTATTTGACGACCTCGGCTGCTCATGG
GCCTTAATCTCATGGTCCAGCCGCTCTTTCGCCCGGAAAACCTTTGACTG
GATATAGAAGGAGCCGCCTTTGGAGCGTTCGTTGACTTGAAACAGATGCT
CGTAGTTCTTGGTGATAGCGTCCACGTTTTTGGGGTCATCTATATTCAGG
ATCTGCTTGGCTTCCTCCAGCGTCATGCCTGTGCGCAGGTTGGACTCGGC
GCTCTTGTCGCCCTGCTTGCCACCACCCGCCCGTCGTGCTGCTTCCTGAG
ATGCGGCGATCTCCTGGCGCAGCGCCTTGGTAAAGGCTCTTCCCACTGCC
TGGGCGCCCAACACGATGATCTGGGCGATATACTTGGCCATGTCGACTGA
TAACT
BO11853.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5268-PA | 426 | blp-RA | 1..423 | 441..19 | 2115 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:23:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blp-RB | 964 | CG5268-RB | 235..658 | 442..19 | 2120 | 100 | Minus |
blp-RA | 955 | CG5268-RA | 226..649 | 442..19 | 2120 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:23:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15934372..15934634 | 281..19 | 1315 | 100 | Minus |
3R | 32079331 | 3R | 15934151..15934315 | 442..278 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:23:10 has no hits.
BO11853.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:39 Download gff for
BO11853.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blp-PA | 1..426 | 16..441 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:47:12 Download gff for
BO11853.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5268-PA | 1..426 | 16..441 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:38:56 Download gff for
BO11853.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blp-RA | 235..661 | 19..445 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:19:30 Download gff for
BO11853.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blp-RA | 223..649 | 19..445 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:19:30 Download gff for
BO11853.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15934148..15934314 | 279..445 | 99 | -> | Minus |
3R | 15934375..15934634 | 19..278 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:38:56 Download gff for
BO11853.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11760097..11760356 | 19..278 | 100 | | Minus |
arm_3R | 11759870..11760036 | 279..445 | 99 | -> | Minus |
BO11853.complete Sequence
457 bp assembled on 2006-10-11
GenBank Submission: FJ632219
> BO11853.complete
GAAGTTATCAGTCGACATGGCCAAGTATATCGCCCAGATCATCGTGTTGG
GCGCCCAGGCAGTGGGAAGAGCCTTTACCAAGGCGCTGCGCCAGGAGATC
GCCGCATCTCAGGAAGCAGCACGACGGGCGGGTGGTGGCAAGCAGGGCGA
CAAGAGCGCCGAGTCCAACCTGCGCACAGGCATGACGCTGGAGGAAGCCA
AGCAGATCCTGAATATAGATGACCCCAAAAACGTGGACGCTATCACCAAG
AACTACGAGCATCTGTTTCAAGTCAACGAACGCTCCAAAGGCGGCTCCTT
CTATATCCAGTCAAAGGTTTTCCGGGCGAAAGAGCGGCTGGACCATGAGA
TTAAGGCCCATGAGCAGCCGAGGTCGTCAAATACGGAAGCAGCGCAAGAT
ACGGCGGAGGAGTCTCAGAGCAGATCGCGGCAGCGACGCGCAAGCTTTCT
AGACCAT
BO11853.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:49:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blp-RB | 426 | CG5268-PB | 1..423 | 17..439 | 2115 | 100 | Plus |
blp-RA | 426 | CG5268-PA | 1..423 | 17..439 | 2115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:49:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blp-RB | 964 | CG5268-RB | 235..658 | 16..439 | 2120 | 100 | Plus |
blp-RA | 955 | CG5268-RA | 226..649 | 16..439 | 2120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:48:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15934372..15934634 | 177..439 | 1315 | 100 | Plus |
3R | 32079331 | 3R | 15934151..15934315 | 16..180 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:49:00 has no hits.
BO11853.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:19 Download gff for
BO11853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blp-RA | 1..426 | 17..442 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:17 Download gff for
BO11853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blp-RA | 218..644 | 13..439 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:29 Download gff for
BO11853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blp-RA | 239..661 | 17..441 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:19 Download gff for
BO11853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blp-RA | 218..644 | 13..439 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:49 Download gff for
BO11853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
blp-RA | 227..649 | 17..441 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:49 Download gff for
BO11853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15934152..15934314 | 17..179 | 100 | -> | Plus |
3R | 15934375..15934634 | 180..441 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:29 Download gff for
BO11853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11759874..11760036 | 17..179 | 100 | -> | Plus |
arm_3R | 11760097..11760356 | 180..441 | 99 | | Plus |
BO11853.pep Sequence
Translation from 16 to 457
> BO11853.pep
MAKYIAQIIVLGAQAVGRAFTKALRQEIAASQEAARRAGGGKQGDKSAES
NLRTGMTLEEAKQILNIDDPKNVDAITKNYEHLFQVNERSKGGSFYIQSK
VFRAKERLDHEIKAHEQPRSSNTEAAQDTAEESQSRSRQRRASFLDH
BO11853.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blp-PB | 141 | CG5268-PB | 1..141 | 1..141 | 698 | 100 | Plus |
blp-PA | 141 | CG5268-PA | 1..141 | 1..141 | 698 | 100 | Plus |
CG1409-PB | 150 | CG1409-PB | 1..117 | 1..116 | 305 | 55.6 | Plus |