Clone BO11853 Report

Search the DGRC for BO11853

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:118
Well:53
Vector:pDNR-Dual
Associated Gene/Transcriptblp-RA
Protein status:BO11853.pep: validated full length
Sequenced Size:457

Clone Sequence Records

BO11853.5prime Sequence

455 bp (449 high quality bases) assembled on 2006-04-19

> BO11853.5prime
GAAGTTATCAGTCGACATGGCCAAGTATATCGCCCAGATCATCGTGTTGG
GCGCCCAGGCAGTGGGAAGAGCCTTTACCAAGGCGCTGCGCCAGGAGATC
GCCGCATCTCAGGAAGCAGCACGACGGGCGGGTGGTGGCAAGCAGGGCGA
CAAGAGCGCCGAGTCCAACCTGCGCACAGGCATGACGCTGGAGGAAGCCA
AGCAGATCCTGAATATAGATGACCCCAAAAACGTGGACGCTATCACCAAG
AACTACGAGCATCTGTTTCAAGTCAACGAACGCTCCAAAGGCGGCTCCTT
CTATATCCAGTCAAAGGTTTTCCGGGCGAAAGAGCGGCTGGACCATGAGA
TTAAGGCCCATGAGCAGCCGAGGTCGTCAAATACGGAAGCAGCGCAAGAT
ACGGCGGAGGAGTCTCAGAGCAGATCGCGGCAGCGACGCGCAAGCTTTCT
AGACC

BO11853.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5268-PA 426 blp-RA 1..423 17..439 2115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
blp-RB 964 CG5268-RB 235..658 16..439 2120 100 Plus
blp-RA 955 CG5268-RA 226..649 16..439 2120 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:04:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15934372..15934634 177..439 1315 100 Plus
3R 32079331 3R 15934151..15934315 16..180 825 100 Plus
Blast to na_te.dros performed on 2015-02-12 20:04:32 has no hits.

BO11853.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:40 Download gff for BO11853.5prime
Subject Subject Range Query Range Percent Splice Strand
blp-PA 1..426 17..442 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:47:13 Download gff for BO11853.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5268-PA 1..426 17..442 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:54:14 Download gff for BO11853.5prime
Subject Subject Range Query Range Percent Splice Strand
blp-RA 235..661 13..439 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:38:03 Download gff for BO11853.5prime
Subject Subject Range Query Range Percent Splice Strand
blp-RA 223..649 13..439 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:38:03 Download gff for BO11853.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15934148..15934314 13..179 99 -> Plus
3R 15934375..15934634 180..439 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:54:14 Download gff for BO11853.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11759870..11760036 13..179 99 -> Plus
arm_3R 11760097..11760356 180..439 100   Plus

BO11853.3prime Sequence

455 bp (454 high quality bases) assembled on 2006-04-19

> BO11853.3prime
ATGGTCTAGAAAGCTTGCGCGTCGCTGCCGCGATCTGCTCTGAGACTCCT
CCGCCGTATCTTGCGCTGCTTCCGTATTTGACGACCTCGGCTGCTCATGG
GCCTTAATCTCATGGTCCAGCCGCTCTTTCGCCCGGAAAACCTTTGACTG
GATATAGAAGGAGCCGCCTTTGGAGCGTTCGTTGACTTGAAACAGATGCT
CGTAGTTCTTGGTGATAGCGTCCACGTTTTTGGGGTCATCTATATTCAGG
ATCTGCTTGGCTTCCTCCAGCGTCATGCCTGTGCGCAGGTTGGACTCGGC
GCTCTTGTCGCCCTGCTTGCCACCACCCGCCCGTCGTGCTGCTTCCTGAG
ATGCGGCGATCTCCTGGCGCAGCGCCTTGGTAAAGGCTCTTCCCACTGCC
TGGGCGCCCAACACGATGATCTGGGCGATATACTTGGCCATGTCGACTGA
TAACT

BO11853.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG5268-PA 426 blp-RA 1..423 441..19 2115 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
blp-RB 964 CG5268-RB 235..658 442..19 2120 100 Minus
blp-RA 955 CG5268-RA 226..649 442..19 2120 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15934372..15934634 281..19 1315 100 Minus
3R 32079331 3R 15934151..15934315 442..278 825 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:23:10 has no hits.

BO11853.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:39 Download gff for BO11853.3prime
Subject Subject Range Query Range Percent Splice Strand
blp-PA 1..426 16..441 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:47:12 Download gff for BO11853.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5268-PA 1..426 16..441 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:38:56 Download gff for BO11853.3prime
Subject Subject Range Query Range Percent Splice Strand
blp-RA 235..661 19..445 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:19:30 Download gff for BO11853.3prime
Subject Subject Range Query Range Percent Splice Strand
blp-RA 223..649 19..445 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:19:30 Download gff for BO11853.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15934148..15934314 279..445 99 -> Minus
3R 15934375..15934634 19..278 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:38:56 Download gff for BO11853.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11760097..11760356 19..278 100   Minus
arm_3R 11759870..11760036 279..445 99 -> Minus

BO11853.complete Sequence

457 bp assembled on 2006-10-11

GenBank Submission: FJ632219

> BO11853.complete
GAAGTTATCAGTCGACATGGCCAAGTATATCGCCCAGATCATCGTGTTGG
GCGCCCAGGCAGTGGGAAGAGCCTTTACCAAGGCGCTGCGCCAGGAGATC
GCCGCATCTCAGGAAGCAGCACGACGGGCGGGTGGTGGCAAGCAGGGCGA
CAAGAGCGCCGAGTCCAACCTGCGCACAGGCATGACGCTGGAGGAAGCCA
AGCAGATCCTGAATATAGATGACCCCAAAAACGTGGACGCTATCACCAAG
AACTACGAGCATCTGTTTCAAGTCAACGAACGCTCCAAAGGCGGCTCCTT
CTATATCCAGTCAAAGGTTTTCCGGGCGAAAGAGCGGCTGGACCATGAGA
TTAAGGCCCATGAGCAGCCGAGGTCGTCAAATACGGAAGCAGCGCAAGAT
ACGGCGGAGGAGTCTCAGAGCAGATCGCGGCAGCGACGCGCAAGCTTTCT
AGACCAT

BO11853.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:49:01
Subject Length Description Subject Range Query Range Score Percent Strand
blp-RB 426 CG5268-PB 1..423 17..439 2115 100 Plus
blp-RA 426 CG5268-PA 1..423 17..439 2115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
blp-RB 964 CG5268-RB 235..658 16..439 2120 100 Plus
blp-RA 955 CG5268-RA 226..649 16..439 2120 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:48:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15934372..15934634 177..439 1315 100 Plus
3R 32079331 3R 15934151..15934315 16..180 825 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:49:00 has no hits.

BO11853.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:19 Download gff for BO11853.complete
Subject Subject Range Query Range Percent Splice Strand
blp-RA 1..426 17..442 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:17 Download gff for BO11853.complete
Subject Subject Range Query Range Percent Splice Strand
blp-RA 218..644 13..439 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:29 Download gff for BO11853.complete
Subject Subject Range Query Range Percent Splice Strand
blp-RA 239..661 17..441 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:19 Download gff for BO11853.complete
Subject Subject Range Query Range Percent Splice Strand
blp-RA 218..644 13..439 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:49 Download gff for BO11853.complete
Subject Subject Range Query Range Percent Splice Strand
blp-RA 227..649 17..441 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:49 Download gff for BO11853.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15934152..15934314 17..179 100 -> Plus
3R 15934375..15934634 180..441 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:29 Download gff for BO11853.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11759874..11760036 17..179 100 -> Plus
arm_3R 11760097..11760356 180..441 99   Plus

BO11853.pep Sequence

Translation from 16 to 457

> BO11853.pep
MAKYIAQIIVLGAQAVGRAFTKALRQEIAASQEAARRAGGGKQGDKSAES
NLRTGMTLEEAKQILNIDDPKNVDAITKNYEHLFQVNERSKGGSFYIQSK
VFRAKERLDHEIKAHEQPRSSNTEAAQDTAEESQSRSRQRRASFLDH

BO11853.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
blp-PB 141 CG5268-PB 1..141 1..141 698 100 Plus
blp-PA 141 CG5268-PA 1..141 1..141 698 100 Plus
CG1409-PB 150 CG1409-PB 1..117 1..116 305 55.6 Plus