Clone Sequence Records
BO11854.3prime Sequence
812 bp (810 high quality bases) assembled on 2006-04-19
> BO11854.3prime
ATGGTCTAGAAAGCTTGCAATAGGTGGACCGGTCGTGGTAATGAAGGTAT
CGTCGTCGCACTTGAGGAAGTAGACCGCGGTATTAAAGCAACTGCGGCTA
ATGTGCTTTAGAGCCATCACAGACTTAAGCGTCAGGTTGTTGTAGCTATC
CACGAAGTTCTCCTGAATGATGTCGTTGTACTTTTCCGATTCAATGTGAA
TGCGATTCAGGGTCTCATTGCCCAACATGGCCTCATCTTTCTGGCGGCCT
ACAATGAAAACAATGCGCACTGAGGCAGTCAGAGACTGCCCCTCGCCGCT
CAAATAATCCCCGTACATCTTTAAGCGATCCGGCAGTGGCGGCAGGTAGT
GACCCTTGAGATGACCATGGAGCTTTCCAAACGCTGGGTAGTTGAACTCG
GTGGTATTGCCCCAGGTCTCACGGATGGTATGTCGCTGAATGAAGTTGTC
CACGCCGGTGCATACGGCGATTACCAGGAAGGTCTTATTCCGGCAAAAGT
CCTTGGGAACAATGACGCCAGAACTGAGCCCGATATCCAGGTAGTCAGCT
ATGCTGCGGGAGGTCTCTGACGTCCAATCCGGCAGACCAGCACTACGCTT
GTGTACATCCAAGTAGACGAGCGGCAGGTAGACGAGGAGCAGCCCACAGA
TTAGGAAGGCGCTCAGCGTGTAGCAGCCAAGGCGTCTTAACATCCTGGGA
AGCGGCATGCGATTTCTTAGCTGCCGCTTCCTCAGCTTTGCTTTGCTGCG
TAGCGCTCCACTAGTGGTGACCGTCTCGTCCTCGGATCCGGAAGCAGCTG
CTCCCGAGCTGG
BO11854.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33145-PA | 864 | CG33145-RA | 68..861 | 812..19 | 3970 | 100 | Minus |
CG33145-PB | 1401 | CG33145-RB | 68..837 | 812..43 | 3850 | 100 | Minus |
CG30036-PA | 1167 | CG30036-RA | 469..545 | 177..101 | 135 | 87 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:04:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33145-RA | 2249 | CG33145-RA | 300..1093 | 812..19 | 3970 | 100 | Minus |
CG33145-RB | 2316 | CG33145-RB | 300..1069 | 812..43 | 3850 | 100 | Minus |
CG30036-RA | 1428 | CG30036-RA | 538..671 | 177..44 | 280 | 80.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:04:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11981824..11982372 | 43..591 | 2745 | 100 | Plus |
2R | 25286936 | 2R | 11982436..11982657 | 591..812 | 1110 | 100 | Plus |
2R | 25286936 | 2R | 11978293..11978426 | 44..177 | 280 | 80.6 | Plus |
2R | 25286936 | 2R | 11979731..11979857 | 39..165 | 185 | 76.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:04:28 has no hits.
BO11854.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:41 Download gff for
BO11854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33145-PA | 68..864 | 18..812 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:47:14 Download gff for
BO11854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33145-PA | 68..864 | 18..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:25:13 Download gff for
BO11854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33145-RA | 300..1093 | 19..812 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:28:06 Download gff for
BO11854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33145-RA | 300..1093 | 19..812 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:28:06 Download gff for
BO11854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11981733..11981756 | 19..42 | 100 | <- | Plus |
2R | 11981824..11982371 | 43..590 | 100 | <- | Plus |
2R | 11982436..11982657 | 591..812 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:25:13 Download gff for
BO11854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7869238..7869261 | 19..42 | 100 | <- | Plus |
arm_2R | 7869329..7869876 | 43..590 | 100 | <- | Plus |
arm_2R | 7869941..7870162 | 591..812 | 100 | | Plus |
BO11854.5prime Sequence
740 bp (696 high quality bases) assembled on 2006-04-19
> BO11854.5prime
GAAGTTATCAGTCGACATGGACAGAAGGTGGAATCCAGAAAAAATCGAGG
AGCAGAGCTCCCTCTTGGCAGCGGAATATTCCTCCAGCTCGGGAGCAGCT
GCTTCCGGATCCGAGGACGAGACGGTCACCACTAGTGGAGCGCTACGCAG
CAAAGCAAAGCTGAGGAAGCGGCAGCTAAGAAATCGCATGCCGCTTCCCA
GGATGTTAAGACGCCTTGGCTGCTACACGCTGAGCGCCTTCCTAATCTGT
GGGCTGCTCCTCGTCTACCTGCCGCTCGTCTACTTGGATGTACACAAGCG
TAGTGCTGGTCTGCCGGATTGGACGTCAGAGACCTCCCGCAGCATAGCTG
ACTACCTGGATATCGGGCTCAGTTCTGGCGTCATTGTTCCCAAGGACTTT
TGCCGGAATAAGACCTTCCTGGTAATCGCCGTATGCACCGGCGTGGACAA
CTTCATTCAGCGACATACCATCCGTGAGACCTGGGGCAATACCACCGAGT
TCAACTACCCAGCGTTTGGAAAGCTCCATGGTCATCTCAAGGGTCACTAC
CTGCCGCCACTGCCGGATCGCTTAAAGATGTACGGGGATTATTTGAGCGG
CGAGGGGCAGTCTCTGACTGCCTCAGTGCGCATTGTTTTCATTGTAGGCC
GCCAGAAAGATGAGGCCATGTTGGGCAATGAGACCCTGAATCGCATTCAC
ATTGAATCGGAAAAGTACAACGACATCATTCAAGAAAACT
BO11854.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33145-PA | 864 | CG33145-RA | 1..716 | 17..732 | 3580 | 100 | Plus |
CG33145-PB | 1401 | CG33145-RB | 1..716 | 17..732 | 3580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 05:28:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33145-RB | 2316 | CG33145-RB | 226..956 | 9..740 | 3605 | 99.6 | Plus |
CG33145-RA | 2249 | CG33145-RA | 226..956 | 9..740 | 3605 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 05:28:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11981937..11982372 | 740..305 | 2150 | 99.5 | Minus |
2R | 25286936 | 2R | 11982436..11982726 | 305..15 | 1455 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 05:28:36 has no hits.
BO11854.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:42 Download gff for
BO11854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33145-PA | 1..724 | 17..740 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:47:16 Download gff for
BO11854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33145-PB | 1..724 | 17..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:13:42 Download gff for
BO11854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33145-RA | 216..956 | 1..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:45:44 Download gff for
BO11854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33145-RA | 216..956 | 1..740 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:45:44 Download gff for
BO11854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11981937..11982371 | 306..740 | 99 | <- | Minus |
2R | 11982436..11982736 | 1..305 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:13:42 Download gff for
BO11854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7869442..7869876 | 306..740 | 99 | <- | Minus |
arm_2R | 7869941..7870241 | 1..305 | 98 | | Minus |
BO11854.complete Sequence
895 bp assembled on 2006-10-11
GenBank Submission: FJ632220
> BO11854.complete
GAAGTTATCAGTCGACATGGACAGAAGGTGGAATCCAGAAAAAATCGAGG
AGCAGAGCTCCCTCTTGGCAGCGGAATATTCCTCCAGCTCGGGAGCAGCT
GCTTCCGGATCCGAGGACGAGACGGTCACCACTAGTGGAGCGCTACGCAG
CAAAGCAAAGCTGAGGAAGCGGCAGCTAAGAAATCGCATGCCGCTTCCCA
GGATGTTAAGACGCCTTGGCTGCTACACGCTGAGCGCCTTCCTAATCTGT
GGGCTGCTCCTCGTCTACCTGCCGCTCGTCTACTTGGATGTACACAAGCG
TAGTGCTGGTCTGCCGGATTGGACGTCAGAGACCTCCCGCAGCATAGCTG
ACTACCTGGATATCGGGCTCAGTTCTGGCGTCATTGTTCCCAAGGACTTT
TGCCGGAATAAGACCTTCCTGGTAATCGCCGTATGCACCGGCGTGGACAA
CTTCATTCAGCGACATACCATCCGTGAGACCTGGGGCAATACCACCGAGT
TCAACTACCCAGCGTTTGGAAAGCTCCATGGTCATCTCAAGGGTCACTAC
CTGCCGCCACTGCCGGATCGCTTAAAGATGTACGGGGATTATTTGAGCGG
CGAGGGGCAGTCTCTGACTGCCTCAGTGCGCATTGTTTTCATTGTAGGCC
GCCAGAAAGATGAGGCCATGTTGGGCAATGAGACCCTGAATCGCATTCAC
ATTGAATCGGAAAAGTACAACGACATCATTCAGGAGAACTTCGTGGATAG
CTACAACAACCTGACGCTTAAGTCTGTGATGGCTCTAAAGCACATTAGCC
GCAGTTGCTTTAATACCGCGGTCTACTTCCTCAAGTGCGACGACGATACC
TTCATTACCACGACCGGTCCACCTATTGCAAGCTTTCTAGACCAT
BO11854.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:38:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33145-RA | 864 | CG33145-PA | 1..861 | 17..877 | 4305 | 100 | Plus |
CG33145-RB | 1401 | CG33145-PB | 1..837 | 17..853 | 4185 | 100 | Plus |
CG30036-RA | 1167 | CG30036-PA | 469..602 | 719..852 | 280 | 80.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:38:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33145-RA | 2249 | CG33145-RA | 231..1093 | 15..877 | 4315 | 100 | Plus |
CG33145-RB | 2316 | CG33145-RB | 231..1069 | 15..853 | 4195 | 100 | Plus |
CG30036-RA | 1428 | CG30036-RA | 538..671 | 719..852 | 280 | 80.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:38:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11981824..11982372 | 853..305 | 2745 | 100 | Minus |
2R | 25286936 | 2R | 11982436..11982726 | 305..15 | 1455 | 100 | Minus |
2R | 25286936 | 2R | 11978293..11978426 | 852..719 | 280 | 80.6 | Minus |
2R | 25286936 | 2R | 11979731..11979857 | 857..731 | 185 | 76.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:38:21 has no hits.
BO11854.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:20 Download gff for
BO11854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33145-RA | 1..864 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:18 Download gff for
BO11854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33145-RA | 212..1089 | 1..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:26 Download gff for
BO11854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33145-RA | 233..1093 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:21 Download gff for
BO11854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33145-RA | 212..1089 | 1..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:58 Download gff for
BO11854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33145-RA | 233..1093 | 17..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:58 Download gff for
BO11854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11981731..11981756 | 854..879 | 92 | <- | Minus |
2R | 11981824..11982371 | 306..853 | 100 | <- | Minus |
2R | 11982436..11982724 | 17..305 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:26 Download gff for
BO11854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7869236..7869261 | 854..879 | 92 | <- | Minus |
arm_2R | 7869329..7869876 | 306..853 | 100 | <- | Minus |
arm_2R | 7869941..7870229 | 17..305 | 100 | | Minus |
BO11854.pep Sequence
Translation from 16 to 895
> BO11854.pep
MDRRWNPEKIEEQSSLLAAEYSSSSGAAASGSEDETVTTSGALRSKAKLR
KRQLRNRMPLPRMLRRLGCYTLSAFLICGLLLVYLPLVYLDVHKRSAGLP
DWTSETSRSIADYLDIGLSSGVIVPKDFCRNKTFLVIAVCTGVDNFIQRH
TIRETWGNTTEFNYPAFGKLHGHLKGHYLPPLPDRLKMYGDYLSGEGQSL
TASVRIVFIVGRQKDEAMLGNETLNRIHIESEKYNDIIQENFVDSYNNLT
LKSVMALKHISRSCFNTAVYFLKCDDDTFITTTGPPIASFLDH
BO11854.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33145-PA | 287 | CG33145-PA | 1..287 | 1..287 | 1499 | 100 | Plus |
CG33145-PB | 466 | CG33145-PB | 1..289 | 1..291 | 1462 | 96.9 | Plus |
CG30036-PA | 388 | CG30036-PA | 4..211 | 80..291 | 603 | 57.3 | Plus |
CG30037-PA | 420 | CG30037-PA | 28..241 | 74..291 | 602 | 53.4 | Plus |