Clone BO11854 Report

Search the DGRC for BO11854

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:118
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCG33145-RA
Protein status:BO11854.pep: validated full length
Sequenced Size:895

Clone Sequence Records

BO11854.3prime Sequence

812 bp (810 high quality bases) assembled on 2006-04-19

> BO11854.3prime
ATGGTCTAGAAAGCTTGCAATAGGTGGACCGGTCGTGGTAATGAAGGTAT
CGTCGTCGCACTTGAGGAAGTAGACCGCGGTATTAAAGCAACTGCGGCTA
ATGTGCTTTAGAGCCATCACAGACTTAAGCGTCAGGTTGTTGTAGCTATC
CACGAAGTTCTCCTGAATGATGTCGTTGTACTTTTCCGATTCAATGTGAA
TGCGATTCAGGGTCTCATTGCCCAACATGGCCTCATCTTTCTGGCGGCCT
ACAATGAAAACAATGCGCACTGAGGCAGTCAGAGACTGCCCCTCGCCGCT
CAAATAATCCCCGTACATCTTTAAGCGATCCGGCAGTGGCGGCAGGTAGT
GACCCTTGAGATGACCATGGAGCTTTCCAAACGCTGGGTAGTTGAACTCG
GTGGTATTGCCCCAGGTCTCACGGATGGTATGTCGCTGAATGAAGTTGTC
CACGCCGGTGCATACGGCGATTACCAGGAAGGTCTTATTCCGGCAAAAGT
CCTTGGGAACAATGACGCCAGAACTGAGCCCGATATCCAGGTAGTCAGCT
ATGCTGCGGGAGGTCTCTGACGTCCAATCCGGCAGACCAGCACTACGCTT
GTGTACATCCAAGTAGACGAGCGGCAGGTAGACGAGGAGCAGCCCACAGA
TTAGGAAGGCGCTCAGCGTGTAGCAGCCAAGGCGTCTTAACATCCTGGGA
AGCGGCATGCGATTTCTTAGCTGCCGCTTCCTCAGCTTTGCTTTGCTGCG
TAGCGCTCCACTAGTGGTGACCGTCTCGTCCTCGGATCCGGAAGCAGCTG
CTCCCGAGCTGG

BO11854.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG33145-PA 864 CG33145-RA 68..861 812..19 3970 100 Minus
CG33145-PB 1401 CG33145-RB 68..837 812..43 3850 100 Minus
CG30036-PA 1167 CG30036-RA 469..545 177..101 135 87 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:04:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG33145-RA 2249 CG33145-RA 300..1093 812..19 3970 100 Minus
CG33145-RB 2316 CG33145-RB 300..1069 812..43 3850 100 Minus
CG30036-RA 1428 CG30036-RA 538..671 177..44 280 80.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:04:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11981824..11982372 43..591 2745 100 Plus
2R 25286936 2R 11982436..11982657 591..812 1110 100 Plus
2R 25286936 2R 11978293..11978426 44..177 280 80.6 Plus
2R 25286936 2R 11979731..11979857 39..165 185 76.4 Plus
Blast to na_te.dros performed on 2015-02-12 19:04:28 has no hits.

BO11854.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:41 Download gff for BO11854.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33145-PA 68..864 18..812 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:47:14 Download gff for BO11854.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33145-PA 68..864 18..812 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:25:13 Download gff for BO11854.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33145-RA 300..1093 19..812 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:28:06 Download gff for BO11854.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33145-RA 300..1093 19..812 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:28:06 Download gff for BO11854.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11981733..11981756 19..42 100 <- Plus
2R 11981824..11982371 43..590 100 <- Plus
2R 11982436..11982657 591..812 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:25:13 Download gff for BO11854.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7869238..7869261 19..42 100 <- Plus
arm_2R 7869329..7869876 43..590 100 <- Plus
arm_2R 7869941..7870162 591..812 100   Plus

BO11854.5prime Sequence

740 bp (696 high quality bases) assembled on 2006-04-19

> BO11854.5prime
GAAGTTATCAGTCGACATGGACAGAAGGTGGAATCCAGAAAAAATCGAGG
AGCAGAGCTCCCTCTTGGCAGCGGAATATTCCTCCAGCTCGGGAGCAGCT
GCTTCCGGATCCGAGGACGAGACGGTCACCACTAGTGGAGCGCTACGCAG
CAAAGCAAAGCTGAGGAAGCGGCAGCTAAGAAATCGCATGCCGCTTCCCA
GGATGTTAAGACGCCTTGGCTGCTACACGCTGAGCGCCTTCCTAATCTGT
GGGCTGCTCCTCGTCTACCTGCCGCTCGTCTACTTGGATGTACACAAGCG
TAGTGCTGGTCTGCCGGATTGGACGTCAGAGACCTCCCGCAGCATAGCTG
ACTACCTGGATATCGGGCTCAGTTCTGGCGTCATTGTTCCCAAGGACTTT
TGCCGGAATAAGACCTTCCTGGTAATCGCCGTATGCACCGGCGTGGACAA
CTTCATTCAGCGACATACCATCCGTGAGACCTGGGGCAATACCACCGAGT
TCAACTACCCAGCGTTTGGAAAGCTCCATGGTCATCTCAAGGGTCACTAC
CTGCCGCCACTGCCGGATCGCTTAAAGATGTACGGGGATTATTTGAGCGG
CGAGGGGCAGTCTCTGACTGCCTCAGTGCGCATTGTTTTCATTGTAGGCC
GCCAGAAAGATGAGGCCATGTTGGGCAATGAGACCCTGAATCGCATTCAC
ATTGAATCGGAAAAGTACAACGACATCATTCAAGAAAACT

BO11854.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG33145-PA 864 CG33145-RA 1..716 17..732 3580 100 Plus
CG33145-PB 1401 CG33145-RB 1..716 17..732 3580 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 05:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG33145-RB 2316 CG33145-RB 226..956 9..740 3605 99.6 Plus
CG33145-RA 2249 CG33145-RA 226..956 9..740 3605 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 05:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11981937..11982372 740..305 2150 99.5 Minus
2R 25286936 2R 11982436..11982726 305..15 1455 100 Minus
Blast to na_te.dros performed on 2015-02-04 05:28:36 has no hits.

BO11854.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:42 Download gff for BO11854.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33145-PA 1..724 17..740 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:47:16 Download gff for BO11854.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33145-PB 1..724 17..740 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:13:42 Download gff for BO11854.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33145-RA 216..956 1..740 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:45:44 Download gff for BO11854.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33145-RA 216..956 1..740 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:45:44 Download gff for BO11854.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11981937..11982371 306..740 99 <- Minus
2R 11982436..11982736 1..305 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:13:42 Download gff for BO11854.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7869442..7869876 306..740 99 <- Minus
arm_2R 7869941..7870241 1..305 98   Minus

BO11854.complete Sequence

895 bp assembled on 2006-10-11

GenBank Submission: FJ632220

> BO11854.complete
GAAGTTATCAGTCGACATGGACAGAAGGTGGAATCCAGAAAAAATCGAGG
AGCAGAGCTCCCTCTTGGCAGCGGAATATTCCTCCAGCTCGGGAGCAGCT
GCTTCCGGATCCGAGGACGAGACGGTCACCACTAGTGGAGCGCTACGCAG
CAAAGCAAAGCTGAGGAAGCGGCAGCTAAGAAATCGCATGCCGCTTCCCA
GGATGTTAAGACGCCTTGGCTGCTACACGCTGAGCGCCTTCCTAATCTGT
GGGCTGCTCCTCGTCTACCTGCCGCTCGTCTACTTGGATGTACACAAGCG
TAGTGCTGGTCTGCCGGATTGGACGTCAGAGACCTCCCGCAGCATAGCTG
ACTACCTGGATATCGGGCTCAGTTCTGGCGTCATTGTTCCCAAGGACTTT
TGCCGGAATAAGACCTTCCTGGTAATCGCCGTATGCACCGGCGTGGACAA
CTTCATTCAGCGACATACCATCCGTGAGACCTGGGGCAATACCACCGAGT
TCAACTACCCAGCGTTTGGAAAGCTCCATGGTCATCTCAAGGGTCACTAC
CTGCCGCCACTGCCGGATCGCTTAAAGATGTACGGGGATTATTTGAGCGG
CGAGGGGCAGTCTCTGACTGCCTCAGTGCGCATTGTTTTCATTGTAGGCC
GCCAGAAAGATGAGGCCATGTTGGGCAATGAGACCCTGAATCGCATTCAC
ATTGAATCGGAAAAGTACAACGACATCATTCAGGAGAACTTCGTGGATAG
CTACAACAACCTGACGCTTAAGTCTGTGATGGCTCTAAAGCACATTAGCC
GCAGTTGCTTTAATACCGCGGTCTACTTCCTCAAGTGCGACGACGATACC
TTCATTACCACGACCGGTCCACCTATTGCAAGCTTTCTAGACCAT

BO11854.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG33145-RA 864 CG33145-PA 1..861 17..877 4305 100 Plus
CG33145-RB 1401 CG33145-PB 1..837 17..853 4185 100 Plus
CG30036-RA 1167 CG30036-PA 469..602 719..852 280 80.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:38:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG33145-RA 2249 CG33145-RA 231..1093 15..877 4315 100 Plus
CG33145-RB 2316 CG33145-RB 231..1069 15..853 4195 100 Plus
CG30036-RA 1428 CG30036-RA 538..671 719..852 280 80.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:38:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11981824..11982372 853..305 2745 100 Minus
2R 25286936 2R 11982436..11982726 305..15 1455 100 Minus
2R 25286936 2R 11978293..11978426 852..719 280 80.6 Minus
2R 25286936 2R 11979731..11979857 857..731 185 76.4 Minus
Blast to na_te.dros performed on 2014-11-28 00:38:21 has no hits.

BO11854.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:20 Download gff for BO11854.complete
Subject Subject Range Query Range Percent Splice Strand
CG33145-RA 1..864 17..878 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:18 Download gff for BO11854.complete
Subject Subject Range Query Range Percent Splice Strand
CG33145-RA 212..1089 1..877 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:26 Download gff for BO11854.complete
Subject Subject Range Query Range Percent Splice Strand
CG33145-RA 233..1093 17..879 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:21 Download gff for BO11854.complete
Subject Subject Range Query Range Percent Splice Strand
CG33145-RA 212..1089 1..877 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:58 Download gff for BO11854.complete
Subject Subject Range Query Range Percent Splice Strand
CG33145-RA 233..1093 17..879 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:58 Download gff for BO11854.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11981731..11981756 854..879 92 <- Minus
2R 11981824..11982371 306..853 100 <- Minus
2R 11982436..11982724 17..305 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:26 Download gff for BO11854.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7869236..7869261 854..879 92 <- Minus
arm_2R 7869329..7869876 306..853 100 <- Minus
arm_2R 7869941..7870229 17..305 100   Minus

BO11854.pep Sequence

Translation from 16 to 895

> BO11854.pep
MDRRWNPEKIEEQSSLLAAEYSSSSGAAASGSEDETVTTSGALRSKAKLR
KRQLRNRMPLPRMLRRLGCYTLSAFLICGLLLVYLPLVYLDVHKRSAGLP
DWTSETSRSIADYLDIGLSSGVIVPKDFCRNKTFLVIAVCTGVDNFIQRH
TIRETWGNTTEFNYPAFGKLHGHLKGHYLPPLPDRLKMYGDYLSGEGQSL
TASVRIVFIVGRQKDEAMLGNETLNRIHIESEKYNDIIQENFVDSYNNLT
LKSVMALKHISRSCFNTAVYFLKCDDDTFITTTGPPIASFLDH

BO11854.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG33145-PA 287 CG33145-PA 1..287 1..287 1499 100 Plus
CG33145-PB 466 CG33145-PB 1..289 1..291 1462 96.9 Plus
CG30036-PA 388 CG30036-PA 4..211 80..291 603 57.3 Plus
CG30037-PA 420 CG30037-PA 28..241 74..291 602 53.4 Plus