Clone Sequence Records
BO11855.3prime Sequence
847 bp (837 high quality bases) assembled on 2006-04-19
> BO11855.3prime
ATGGTCTAGAAAGCTTGCAAATAAGCGGGTCAGGCGGGGCCGGAAGAAAC
GAAAGGCACCGTAGCATCCGAGGCCAATTAGGCCGTACTTCAGGGTGTAC
TTGCAGACGCGTTGTCCCAGGCTGGCCGGCGGTATTTCGAGAATGGCCGG
AATCTTCTTCGGATCGACGGTGCCCCACATCTTGGCAATTCCGTTGGCGT
GTCCGATGCCCACCACTCCGACCACACGTACCGGACGGACCTGTTGGCCA
CCTGGAGCCGCCTGAGGCAGCGCAGCCAGTTGCAGAGAGTGGCATAGGAA
AACGTCGCGCTCGCGCACAAACACATCCGAAAAGGCAGGAAACTCGCCGG
CCATCTCCTGCATCAGCTTCTCTAACAGATCGCTCTGCTTGCACTCCTCT
ACCTCCTCAATGCTGATGCTGTCCGTGAAGGTAAGACGCCACACCAGTTT
CATGGTCTGCCACATGGACAAAGCGCGCAGAGCGCGGTAAAGTGTGATGC
GGATTGGGCGATCGCCTAGATGTAAGATGCAACCGGGCAGCTTGTGAATC
TCCTCGAAGGCACGGCGAAATTCGCCACCGGGCGCCATGCCCAGGTCCTT
GGCGATCTGAGCGCTCATCTGCAGCAGTAGGATGAAAAAGATGCCATTGA
TGTAGCCGTGCGTGTGCAGGATTCCTCGAATCTTGGGAATATTGATGCTT
TTGGCTTCCTCCAGCAGGGTCTTTTCATCGAGCTTAAGGATGTGTATGCG
CGATGGACACAACTCCACCATTTACCACATCTGGACGGACATTGCGAATG
ACATAAGAGACGTCATCCTGCGACTCCTCGCTGAAGTGGGCCGTGCC
BO11855.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12360-PA | 1599 | CG12360-RA | 843..1596 | 772..19 | 3770 | 100 | Minus |
| CG12360-PB | 1599 | CG12360-RB | 843..1596 | 772..19 | 3770 | 100 | Minus |
| CG12360-PA | 1599 | CG12360-RA | 769..844 | 847..772 | 380 | 100 | Minus |
| CG12360-PB | 1599 | CG12360-RB | 769..844 | 847..772 | 380 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:16:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12360-RB | 2795 | CG12360-RB | 947..1774 | 847..19 | 4120 | 99.9 | Minus |
| CG12360-RA | 2158 | CG12360-RA | 1118..1945 | 847..19 | 4120 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:16:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13027304..13027968 | 19..683 | 3325 | 100 | Plus |
| 3R | 32079331 | 3R | 13028027..13028146 | 682..802 | 555 | 99.2 | Plus |
| 3R | 32079331 | 3R | 13028203..13028249 | 801..847 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:16:26 has no hits.
BO11855.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:43 Download gff for
BO11855.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12360-PB | 769..1599 | 18..847 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:47:17 Download gff for
BO11855.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12360-PB | 769..1599 | 18..847 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:38:38 Download gff for
BO11855.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12360-RA | 1118..1945 | 19..847 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:50:34 Download gff for
BO11855.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12360-RA | 1118..1945 | 19..847 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:50:34 Download gff for
BO11855.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13027304..13027966 | 19..681 | 100 | <- | Plus |
| 3R | 13028027..13028146 | 682..802 | 99 | <- | Plus |
| 3R | 13028205..13028249 | 803..847 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:38:38 Download gff for
BO11855.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8853026..8853688 | 19..681 | 100 | <- | Plus |
| arm_3R | 8853749..8853868 | 682..802 | 99 | <- | Plus |
| arm_3R | 8853927..8853971 | 803..847 | 100 | | Plus |
BO11855.5prime Sequence
832 bp (822 high quality bases) assembled on 2006-04-19
> BO11855.5prime
GAAGTTATCAGTCGACATGGACGTATCCGCCTCCACGTCGTTTGAATCCT
CGCCGGACAAGAGAAACAGCATCTATGTGGGCGACAACACTTTCTACGAC
AGCGCCCTGGATCACCAGCTGTCCACCACGGCCTACAAGTCGTGCAATGA
GAGCCTTATCAGCGAACTCAGCCAGAATCCTCTTGGCCCCTCGAACTCGG
CCAACAAGACAGCTAGTGCGGAATTTGGCAATGAATCCGCTGCATTCAAG
CCCCTCGGATCCCCGGCAGCTTTCAACAATGCCACGCCAGCGCTAAATGC
CAGCATGCTGCTGATTCAGTCGGAGAGCACGGACACTAATACCTCGCAGG
AGGAGGTGGACCCCAAGTCACAACTGGCCAACAAGACAATATTCAAGACG
GATAATCCCAACCTGTCAATTATAGAAATTAACGATAACTCGATTAAGGA
GGAGGACCTCGAGAAGGTGGTGCTGGTCGAGGGCGACAGTGTGAAGAATC
TTTTGAAGAAGTCGCCCAGCAAGGAGGCTTCGGCAAACGCTGACAAAAGA
CGCCGCAAGGAATCCCTACTGCACACGAGCAAACAAAAATTGGACATTTC
CATCGCTGAAGCTTCGGCAGCCGCCGATGGTGATGGCGAGAAGCGGGATC
TGGTGTCGGTCATAGATCAGCCGCAGACCAAGCGCGAAATCACAATTTAC
GATACCATTGAGGAGTTCGAACAGAATCTGCCGTCGACGGTGACGCTGTT
GAACACGCCCTTCGGCAGCAAGGTATATCTTGTGGGCACGGCCCACTTCA
GCGAGGAGTCGCAGGATGACGTCTCTTATGTC
BO11855.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12360-PA | 1599 | CG12360-RA | 1..816 | 17..832 | 4080 | 100 | Plus |
| CG12360-PB | 1599 | CG12360-RB | 1..816 | 17..832 | 4080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12360-RB | 2795 | CG12360-RB | 178..994 | 16..832 | 4085 | 100 | Plus |
| CG12360-RA | 2158 | CG12360-RA | 349..1165 | 16..832 | 4085 | 100 | Plus |
| CG12360-RC | 1309 | CG12360-RC | 178..311 | 16..149 | 670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13028203..13028885 | 831..149 | 3415 | 100 | Minus |
| 3R | 32079331 | 3R | 13029919..13030052 | 149..16 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:25:31 has no hits.
BO11855.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:44 Download gff for
BO11855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12360-PB | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:47:18 Download gff for
BO11855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12360-PB | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:26:39 Download gff for
BO11855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12360-RA | 343..1165 | 9..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:16:44 Download gff for
BO11855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12360-RA | 343..1165 | 9..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:16:44 Download gff for
BO11855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13028202..13028884 | 150..832 | 99 | <- | Minus |
| 3R | 13029919..13030058 | 9..149 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:26:39 Download gff for
BO11855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8853924..8854606 | 150..832 | 99 | <- | Minus |
| arm_3R | 8855641..8855780 | 9..149 | 97 | | Minus |
BO11855.complete Sequence
1630 bp assembled on 2008-01-17
GenBank Submission: FJ632221
> BO11855.complete
GAAGTTATCAGTCGACATGGACGTATCCGCCTCCACGTCGTTTGAATCCT
CGCCGGACAAGAGAAACAGCATCTATGTGGGCGACAACACTTTCTACGAC
AGCGCCCTGGATCACCAGCTGTCCACCACGGCCTACAAGTCGTGCAATGA
GAGCCTTATCAGCGAACTCAGCCAGAATCCTCTTGGCCCCTCGAACTCGG
CCAACAAGACAGCTAGTGCGGAATTTGGCAATGAATCCGCTGCATTCAAG
CCCCTCGGATCCCCGGCAGCTTTCAACAATGCCACGCCAGCGCTAAATGC
CAGCATGCTGCTGATTCAGTCGGAGAGCACGGACACTAATACCTCGCAGG
AGGAGGTGGACCCCAAGTCACAACTGGCCAACAAGACAATATTCAAGACG
GATAATCCCAACCTGTCAATTATAGAAATTAACGATAACTCGATTAAGGA
GGAGGACCTCGAGAAGGTGGTGCTGGTCGAGGGCGACAGTGTGAAGAATC
TTTTGAAGAAGTCGCCCAGCAAGGAGGCTTCGGCAAACGCTGACAAAAGA
CGCCGCAAGGAATCCCTACTGCACACGAGCAAACAAAAATTGGACATTTC
CATCGCTGAAGCTTCGGCAGCCGCCGATGGTGATGGCGAGAAGCGGGATC
TGGTGTCGGTCATAGATCAGCCGCAGACCAAGCGCGAAATCACAATTTAC
GATACCATTGAGGAGTTCGAACAGAATCTGCCGTCGACGGTGACGCTGTT
GAACACGCCCTTCGGCAGCAAGGTATATCTTGTGGGCACGGCCCACTTCA
GCGAGGAGTCGCAGGATGACGTCTCTTATGTCATTCGCAATGTCCGTCCA
GATGTGGTAATGGTGGAGTTGTGTCCATCGCGCATACACATCCTTAAGCT
CGATGAAAAGACCCTGCTGGAGGAAGCCAAAAGCATCAATATTCCCAAGA
TTCGAGGAATCCTGCACACGCACGGCTACATCAATGGCATCTTTTTCATC
CTACTGCTGCAGATGAGCGCTCAGATCGCCAAGGACCTGGGCATGGCGCC
CGGTGGCGAATTTCGCCGTGCCTTCGAGGAGATTCACAAGCTGCCCGGTT
GCATCTTACATCTAGGCGATCGCCCAATCCGCATCACACTTTACCGCGCT
CTGCGCGCTTTGTCCATGTGGCAGACCATGAAACTGGTGTGGCGTCTTAC
CTTCACGGACAGCATCAGCATTGAGGAGGTAGAGGAGTGCAAGCAGAGCG
ATCTGTTAGAGAAGCTGATGCAGGAGATGGCCGGCGAGTTTCCTGCCTTT
TCGGATGTGTTTGTGCGCGAGCGCGACGTTTTCCTATGCCACTCTCTGCA
ACTGGCTGCGCTGCCTCAGGCGGCTCCAGGTGGCCAACAGGTCCGTCCGG
TACGTGTGGTCGGAGTGGTGGGCATCGGACACGCCAACGGAATTGCCAAG
ATGTGGGGCACCGTCGATCCGAAGAAGATTCCGGCCATTCTCGAAATACC
GCCGGCCAGCCTGGGACAACGCGTCTGCAAGTACACCCTGAAGTACGGCC
TAATTGGCCTCGGATGCTACGGTGCCTTTCGTTTCTTCCGGCCCCGCCTG
ACCCGCTTATTTGCAAGCTTTCTAGACCAT
BO11855.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:54:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12360-RB | 1599 | CG12360-PB | 1..1596 | 17..1612 | 7980 | 100 | Plus |
| CG12360-RA | 1599 | CG12360-PA | 1..1596 | 17..1612 | 7980 | 100 | Plus |
| CG12360-RC | 1002 | CG12360-PC | 1..133 | 17..149 | 665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:54:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12360-RB | 2795 | CG12360-RB | 178..1774 | 16..1612 | 7985 | 100 | Plus |
| CG12360-RA | 2158 | CG12360-RA | 349..1945 | 16..1612 | 7985 | 100 | Plus |
| CG12360-RC | 1309 | CG12360-RC | 178..311 | 16..149 | 670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:53:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13028203..13028885 | 831..149 | 3415 | 100 | Minus |
| 3R | 32079331 | 3R | 13027304..13027968 | 1612..948 | 3325 | 100 | Minus |
| 3R | 32079331 | 3R | 13029919..13030052 | 149..16 | 670 | 100 | Minus |
| 3R | 32079331 | 3R | 13028027..13028146 | 949..830 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:53:59 has no hits.
BO11855.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:21 Download gff for
BO11855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12360-RB | 1..1599 | 17..1613 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:57 Download gff for
BO11855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12360-RB | 179..1774 | 17..1614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:34 Download gff for
BO11855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12360-RA | 350..1945 | 17..1614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:21 Download gff for
BO11855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12360-RB | 172..1774 | 9..1612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:00 Download gff for
BO11855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12360-RA | 350..1945 | 17..1614 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:00 Download gff for
BO11855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13027302..13027966 | 950..1614 | 99 | <- | Minus |
| 3R | 13028027..13028146 | 830..949 | 100 | <- | Minus |
| 3R | 13028205..13028884 | 150..829 | 100 | <- | Minus |
| 3R | 13029919..13030051 | 17..149 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:34 Download gff for
BO11855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8853024..8853688 | 950..1614 | 99 | <- | Minus |
| arm_3R | 8853749..8853868 | 830..949 | 100 | <- | Minus |
| arm_3R | 8853927..8854606 | 150..829 | 100 | <- | Minus |
| arm_3R | 8855641..8855773 | 17..149 | 100 | | Minus |
BO11855.pep Sequence
Translation from 16 to 1630
> BO11855.pep
MDVSASTSFESSPDKRNSIYVGDNTFYDSALDHQLSTTAYKSCNESLISE
LSQNPLGPSNSANKTASAEFGNESAAFKPLGSPAAFNNATPALNASMLLI
QSESTDTNTSQEEVDPKSQLANKTIFKTDNPNLSIIEINDNSIKEEDLEK
VVLVEGDSVKNLLKKSPSKEASANADKRRRKESLLHTSKQKLDISIAEAS
AAADGDGEKRDLVSVIDQPQTKREITIYDTIEEFEQNLPSTVTLLNTPFG
SKVYLVGTAHFSEESQDDVSYVIRNVRPDVVMVELCPSRIHILKLDEKTL
LEEAKSINIPKIRGILHTHGYINGIFFILLLQMSAQIAKDLGMAPGGEFR
RAFEEIHKLPGCILHLGDRPIRITLYRALRALSMWQTMKLVWRLTFTDSI
SIEEVEECKQSDLLEKLMQEMAGEFPAFSDVFVRERDVFLCHSLQLAALP
QAAPGGQQVRPVRVVGVVGIGHANGIAKMWGTVDPKKIPAILEIPPASLG
QRVCKYTLKYGLIGLGCYGAFRFFRPRLTRLFASFLDH
BO11855.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:27:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12360-PB | 532 | CG12360-PB | 1..532 | 1..532 | 2705 | 100 | Plus |
| CG12360-PA | 532 | CG12360-PA | 1..532 | 1..532 | 2705 | 100 | Plus |
| CG12360-PC | 333 | CG12360-PC | 1..44 | 1..44 | 229 | 100 | Plus |
