Clone Sequence Records
BO11859.3prime Sequence
883 bp (775 high quality bases) assembled on 2006-04-19
> BO11859.3prime
ATGGTCTAGAAAGCTTGCTGATACTGGCTTCGGAGGCAGTGGAACAAGTG
GCTGTTGCTCACGGTCCAGATCGTCACCTTCCTGGTCCAGCGATTCCTCC
AGCTGCTGTTGCTGCTCCTCGGGATCGCTGACTTGGGCCAGCACATCGTC
CAGATGAAGCCACACATACTCCACAGCGGCCCGCAGTTCGCCGGCAAACT
TCCAGACGCTGCGATCATCCGTCAGATTGGTTAGGTTATATTTGTCATCG
GGTTCCCGGTAGTGTTGCATTTGGGCAATGGACGTGTTCAAGGTCCGAGG
GTTACATCCGCCGGGCAGCCACTTGAGGGTAAAGTGGTTGTGCAGCGTCA
AGGATAGACGGGCGTTGTGGAAGCACTTGGTAGCCCGTCCTGGCATAGAG
TAGTTCTTGATCCGCTGTGTGTGCTGGAGGACGTACAACTCCCCGGCGAT
AGCCTGCTCCTCGTGATTGCTGAACTCGGTGGGCACTTTGGTGAAGTACG
AATTGATGAAGCACAAGGCAGGGAAGCGACCAGCACACTTGCCGCCCTTT
TCGACCTCTAGGGCGTGAGCCTTCTGCACCAACTGATGCCAGTTGCGGTT
GTCACCCAGAGGCATTATTACCTCATCCACATCCACGTTGACCAGATAGT
CGTGCCGGTACAGATTCCTGTAGAAGCAATCGTTGTAGGGTATCAGTTCG
TTTAGTCTTTTCTCTAGTTTCCTGTGCTGCAGCAACATGTGCTGGTAGTG
TCTCAGTCTGGGCATTCCATTGGCCAGGGTCAAAGGTCTCAGCTCCAAGT
ATCCAGTGCGCTGATAGTAGTCGAGGACCCTCTGCACCGCTGGATGAACA
TCGTACATATAGGCGTAGATCCGTGAGGCTCCC
BO11859.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11384-PA | 1767 | CG11384-RA | 900..1764 | 883..19 | 4325 | 100 | Minus |
| CG12715-PA | 1518 | CG12715-RA | 1036..1070 | 636..602 | 150 | 97.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:06:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11384-RA | 2159 | CG11384-RA | 924..1788 | 883..19 | 4325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:06:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1174248..1175112 | 19..883 | 4325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:06:52 has no hits.
BO11859.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:51 Download gff for
BO11859.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11384-PA | 900..1767 | 16..883 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:47:27 Download gff for
BO11859.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11384-PA | 900..1767 | 16..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 23:29:53 Download gff for
BO11859.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11384-RA | 924..1788 | 19..883 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:32:00 Download gff for
BO11859.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11384-RA | 924..1788 | 19..883 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:32:00 Download gff for
BO11859.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1174248..1175112 | 19..883 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 23:29:53 Download gff for
BO11859.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1068281..1069145 | 19..883 | 100 | | Plus |
BO11859.5prime Sequence
684 bp (580 high quality bases) assembled on 2006-04-19
> BO11859.5prime
GAAGTTATCAGTTCGACATGTCAACAAGAGGTGGCTTCATTCGGCTCACA
ATTCTGGTGACGGTGGCCGTCTTGGCGATCTTCGTCCTCCTAAGTGCTCT
CCAGCGCACGGATCATCTCAAACCCACTCCCTTGGGCCAATATGGTGTTA
GTGTGGAGGCCGGACTGGCTGCAAAAGTAACTCCCCCACCGATTCGGCAC
CTGGAGGAGCCCATAAAAGAGGAACTTGTGCGGCAATTGGAGCAGGAACT
GCCAGAGGTGGACTATGGCTTCTGGTACCACTGGGCCAAACCCATGGGCT
ACAAGATAAACAAAACATGTGCTGTATATCCCGATCCCCTGGACCTGCAG
CTGCACAACATCTACTGGCAGACCTTCGTCAACGCGAACGTGACCTTTCG
GCTATACGCCGCCTACTTGGACAAGCGGAAAGGGCTTAAATTGCCAACGG
TAAGGATTTTGGCCACTGCCAATCAGATCGACAACGAGTTCCCACCAACC
CATTGTCAAATGTGGTTTGAGGGATATCGGCAGCCCATTTTTGTACCCGT
GGCGGAGTTCCTGAGTGTGTGGGTCGAGGCGTGGGGCAATAAGCCGAATC
TTAACTACCCGCACCTGTTGAGCTGTCCGGTTCCCAGTGAATTGCCGCCG
CCTACGGTGAACTCCTTTCCAAAACAGTTTCCCT
BO11859.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:31:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11384-PA | 1767 | CG11384-RA | 1..657 | 18..674 | 3285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:04:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11384-RA | 2159 | CG11384-RA | 25..692 | 18..684 | 3315 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:04:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1175344..1176011 | 684..18 | 3290 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-12 20:04:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\worf | 4174 | Dmir\worf WORF 4174bp Derived from AY144572. | 791..853 | 263..202 | 123 | 68.3 | Minus |
BO11859.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:52 Download gff for
BO11859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11384-PA | 1..668 | 18..684 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:47:29 Download gff for
BO11859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11384-PA | 1..668 | 18..684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:54:08 Download gff for
BO11859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11384-RA | 25..692 | 18..684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:37:27 Download gff for
BO11859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11384-RA | 25..692 | 18..684 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:37:27 Download gff for
BO11859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1175344..1176011 | 18..684 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:54:08 Download gff for
BO11859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1069377..1070044 | 18..684 | 99 | | Minus |
BO11859.complete Sequence
1799 bp assembled on 2008-08-14
GenBank Submission: FJ632222
> BO11859.complete
GAAGTTATCAGTTCGACATGTCAACAAGAGGTGGCTTCATTCGGCTCACA
ATTCTGGTGACGGTGGCCGTCTTGGCGATCTTCGTCCTCCTAAGTGCTCT
CCAGCGCACGGATCATCTCAAACCCACTCCCTTGGGCCAATATGGTGTTA
GTGTGGAGGCCGGACTGGCTGCAAAAGTAACTCCCCCACCGATTCGGCAC
CTGGAGGAGCCCATAAAAGAGGAACTTGTGCGGCAATTGGAGCAGGAACT
GCCAGAGGTGGACTATGGCTTCTGGTACCACTGGGCCAAACCCATGGGCT
ACAAGATAAACAAAACATGTGCTGTATATCCCGATCCCCTGGACCTGCAG
CTGCACAACATCTACTGGCAGACCTTCGTCAACGCGAACGTGACCTTTCG
GCTATACGCCGCCTACTTGGACAAGCGGAAAGGGCTTAAATTGCCAACGG
TAAGGATTTTGGCCACTGCCAATCAGATCGACAACGAGTTCCCACCAACC
CATTGTCAAATGTGGTTTGAGGGATATCGGCAGCCCATTTTTGTACCCGT
GGCGGAGTTCCTGAGTGTGTGGGTCGAGGCGTGGGGCAATAAGCCGAATC
TTAACTACCCGCACCTGTTGAGCTGTCCGGTTCCCAGTGAATTGCCGCCG
CCTACGGTGAACTCCTTTCCAAAAACAGTTTCCCTAGTTGCGCGGCATTG
CGAAAAGGCGGGAAATTCGCTGAGGGTCAATATGAATCGGAAGCAGTCAC
TGCCCGTGGTGATCCCGCCCTCTCAAAATCCCAAGTCCCAAAATGCCACT
ATCCAAAGTCAAAATGAAGCTCTTCAGAACTTTGGAGTTTGCCTCAAGGG
ATTCGATTTTCCCTATGTGGATTTATCAGAGCGCCTTATCGAGTGGTTTG
AGCTGCAGCGAATTTTGGGAGCCTCACGGATCTACGCCTATATGTACGAT
GTTCATCCAGCGGTGCAGAGGGTCCTCGACTACTATCAGCGCACTGGATA
CTTGGAGCTGAGACCTTTGACCCTGGCCAATGGAATGCCCAGACTGAGAC
ACTACCAGCACATGTTGCTGCAGCACAGGAAACTAGAGAAAAGACTAAAC
GAACTGATACCCTACAACGATTGCTTCTACAGGAATCTGTACCGGCACGA
CTATCTGGTCAACGTGGATGTGGATGAGGTAATAATGCCTCTGGGTGACA
ACCGCAACTGGCATCAGTTGGTGCAGAAGGCTCACGCCCTAGAGGTCGAA
AAGGGCGGCAAGTGTGCTGGTCGCTTCCCTGCCTTGTGCTTCATCAATTC
GTACTTCACCAAAGTGCCCACCGAGTTCAGCAATCACGAGGAGCAGGCTA
TCGCCGGGGAGTTGTACGTCCTCCAGCACACACAGCGGATCAAGAACTAC
TCTATGCCAGGACGGGCTACCAAGTGCTTCCACAACGCCCGTCTATCCTT
GACGCTGCACAACCACTTTACCCTCAAGTGGCTGCCCGGCGGATGTAACC
CTCGGACCTTGAACACGTCCATTGCCCAAATGCAACACTACCGGGAACCC
GATGACAAATATAACCTAACCAATCTGACGGATGATCGCAGCGTCTGGAA
GTTTGCCGGCGAACTGCGGGCCGCTGTGGAGTATGTGTGGCTTCATCTGG
ACGATGTGCTGGCCCAAGTCAGCGATCCCGAGGAGCAGCAACAGCAGCTG
GAGGAATCGCTGGACCAGGAAGGTGACGATCTGGACCGTGAGCAACAGCC
ACTTGTTCCACTGCCTCCGAAGCCAGTATCAGCAAGCTTTCTAGACCAT
BO11859.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:16:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11384-RA | 1767 | CG11384-PA | 1..1764 | 18..1781 | 8820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:16:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11384-RA | 2159 | CG11384-RA | 25..1788 | 18..1781 | 8820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:16:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1174248..1176011 | 1781..18 | 8820 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 07:16:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\worf | 4174 | Dmir\worf WORF 4174bp Derived from AY144572. | 791..853 | 263..202 | 123 | 68.3 | Minus |
BO11859.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:04 Download gff for
BO11859.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11384-RA | 12..1775 | 18..1781 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:47 Download gff for
BO11859.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11384-RA | 24..1788 | 17..1783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:25 Download gff for
BO11859.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11384-RA | 11..1775 | 17..1783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:16 Download gff for
BO11859.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11384-RA | 24..1788 | 17..1783 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:16 Download gff for
BO11859.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1174245..1176011 | 17..1783 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:47 Download gff for
BO11859.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1068278..1070044 | 17..1783 | 99 | | Minus |
BO11859.pep Sequence
Translation from 17 to 1799
> BO11859.pep
MSTRGGFIRLTILVTVAVLAIFVLLSALQRTDHLKPTPLGQYGVSVEAGL
AAKVTPPPIRHLEEPIKEELVRQLEQELPEVDYGFWYHWAKPMGYKINKT
CAVYPDPLDLQLHNIYWQTFVNANVTFRLYAAYLDKRKGLKLPTVRILAT
ANQIDNEFPPTHCQMWFEGYRQPIFVPVAEFLSVWVEAWGNKPNLNYPHL
LSCPVPSELPPPTVNSFPKTVSLVARHCEKAGNSLRVNMNRKQSLPVVIP
PSQNPKSQNATIQSQNEALQNFGVCLKGFDFPYVDLSERLIEWFELQRIL
GASRIYAYMYDVHPAVQRVLDYYQRTGYLELRPLTLANGMPRLRHYQHML
LQHRKLEKRLNELIPYNDCFYRNLYRHDYLVNVDVDEVIMPLGDNRNWHQ
LVQKAHALEVEKGGKCAGRFPALCFINSYFTKVPTEFSNHEEQAIAGELY
VLQHTQRIKNYSMPGRATKCFHNARLSLTLHNHFTLKWLPGGCNPRTLNT
SIAQMQHYREPDDKYNLTNLTDDRSVWKFAGELRAAVEYVWLHLDDVLAQ
VSDPEEQQQQLEESLDQEGDDLDREQQPLVPLPPKPVSASFLDH
BO11859.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:28:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11384-PA | 588 | CG11384-PA | 1..588 | 1..588 | 3166 | 100 | Plus |
| CG3655-PD | 563 | CG3655-PD | 81..523 | 68..533 | 820 | 37.6 | Plus |
| CG3655-PB | 563 | CG3655-PB | 81..523 | 68..533 | 820 | 37.6 | Plus |
| CG3655-PA | 563 | CG3655-PA | 81..523 | 68..533 | 820 | 37.6 | Plus |
| CG3655-PC | 596 | CG3655-PC | 81..523 | 68..533 | 820 | 37.6 | Plus |
