Clone Sequence Records
BO11863.3prime Sequence
870 bp (767 high quality bases) assembled on 2006-04-19
> BO11863.3prime
ATGGTCTAGAAAGCTTGCCATGTCAGCAACACGCGCCTTCAGCTCCCTCA
GCTCCTCGGCCACGGCACCTGGCAGATGGTGGCCCACCTGCTCCTCGAAG
TACCTCTCTATGGCAGCCACCTCCTGCTCCCAGAAATCTTTTGGCAGATC
GAAAAGCTGGTCGAGATCAATGTTTTCCAAACTATCCAAGTTCAATGAAT
TCTTGCTGGGCAGGCGGCCAATGGGAGAGTCCTCGAAGCACTGCTCGCCC
TCCACCCGCCGGAAGATCCAGTCCAGGACTCGTGAGTTCTCCCCGAATCC
GGGCCAAAGGAACTTGCCCTCACTGCTCTTTCGGAACCAATTTACGTGAA
AGATCTTGGGCACCTGGCCACGCTGCTCCATGCTTAGCCAGTGACCCAGA
TAGTCGCCGAAGTTGTAGCCGAAAAAGGGTCTCATGGCGAAGGGATCGTG
CATGATGACCTTGCCCTTGAACTCAGCGGCTGCCGTGGCCTCGCTCCTCA
TAGCAGCTCCAATAAATACGCCGTGCTTCCAGTCTCGAGCCTCGTAAACC
AAGGGAACTCCACTGGGACGACGACCTCCGAAAAGAATTGCGGAGATGGG
CACTCCTTCGCTATCCTCCCAGGCGGGATCAATAATGGGACACTGAGAGG
CGGGTGTACAGAACCTGGAGTTGGGATGGGCAGCTGGCTTTCCGGATTCC
TGGGACCAGAGTTTACCCAACCAGTCCGTGACAGTCACCCCCTTCAGCTG
ATCCTTTTCCATTCCCTCCCAGTAGACACCTCCATCGGATGTAGAGGCCA
CGTTCGTAAAGACAGAGTTTCGGAAGATCGTATCCATGGCTATGGGAATG
GGTGGCCCTCGACGTTCCGG
BO11863.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10924-PA | 1917 | CG10924-RA | 1086..1914 | 847..19 | 4145 | 100 | Minus |
CG17725-PB | 1503 | Pepck-RB | 1047..1115 | 469..401 | 195 | 91.3 | Minus |
CG17725-PA | 1944 | Pepck-RA | 1488..1556 | 469..401 | 195 | 91.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:16:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10924-RB | 2019 | CG10924-RB | 1096..1946 | 870..19 | 4220 | 99.8 | Minus |
CG10924-RA | 3449 | CG10924-RA | 1400..2250 | 870..19 | 4220 | 99.8 | Minus |
CG45087-RA | 2486 | CG45087-RA | 1497..2010 | 731..218 | 1055 | 80.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:16:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18533700..18534550 | 870..19 | 4195 | 99.8 | Minus |
2R | 25286936 | 2R | 18538427..18538940 | 731..218 | 1055 | 80.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:16:46 has no hits.
BO11863.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:58 Download gff for
BO11863.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10924-PA | 1064..1917 | 16..870 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:47:38 Download gff for
BO11863.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10924-PA | 1064..1917 | 16..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:38:40 Download gff for
BO11863.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10924-RA | 1400..2250 | 19..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:51:22 Download gff for
BO11863.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10924-RA | 1400..2250 | 19..870 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:51:22 Download gff for
BO11863.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18533700..18534550 | 19..870 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:38:40 Download gff for
BO11863.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14421205..14422055 | 19..870 | 99 | | Minus |
BO11863.5prime Sequence
892 bp (779 high quality bases) assembled on 2006-04-19
> BO11863.5prime
GAAGTTATCAGTCGACATGCTGCTCAAAGGCGCACAGCTGCTGCGATGCG
GATTGGTCTCACCACACCGGAACTCGAACTTCCGCCTGACCTGTCGCTTC
CTCTCCATTCAGTATGGAGATGCAAAGATCCTCACCCCTGCCGTCAAACA
GTACGTGGAAAAGTGCGTGGAGCTCTGCCAACCGGAAAGGGTGCACATCT
GTGATGGTACTGAGGTCGAGAGCAAGTTGCTCCAGGGCATCATGCTGAAG
AAGGGAACCATCATTCCTCTGCCGAAGTACGAGAATTGCTGGCTGGCAAG
AACCAATCCGGCGGATGTGGCTAGAGTGGAGGGAAAAACGTTCATCTCAA
CGGATTCGAAGGAGCAGACAGTACCGGTTACGGAGAAGGCCACACCGGGA
ATGCTGGGTAACTGGATAGCCGAAAAGGACATGCAGGCGGCGATCAAGGA
AAGATTCCCCGGCTGCATGAAAGGTCGCACCATGTATGTTATTCCTTTTA
GCATGGGTCCAGTGGGCTCACCTCTCTCCAAAATCGGAATCGAGATCACA
GACTCACCATACGTCGTCGAGTCCATGAAGATCATGACTAGGGCGGGCAA
TCCAGTGCTTAATTATCTGCAATCTGGGGATGGTCAGTTTGTCAAGTGCC
TGCATTCCGTGGGTACGCCCAAAAGTGGTGTCCAGGCAATGCCATCCTGG
CCCTGCGATCCCGAACGCACTATTGTGCTGCACAAGCCAGCAGAAAATGA
GATTGTATCTTATGGATCTGGGTATGGTGGTAACTCCCTGCTGGGCAAGA
AGTGCCTCGCTCTGAGGATTGGCAGCACCATTGCCAAACGAGAGGGCTGG
CTGGCCGAGCACATGTTGATACTGGGCATCACCAATCGGCAA
BO11863.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10924-PA | 1917 | CG10924-RA | 1..871 | 17..887 | 4330 | 99.8 | Plus |
CG17725-PB | 1503 | Pepck-RB | 349..404 | 782..837 | 205 | 94.6 | Plus |
CG17725-PA | 1944 | Pepck-RA | 790..845 | 782..837 | 205 | 94.6 | Plus |
CG17725-PB | 1503 | Pepck-RB | 409..450 | 842..883 | 185 | 97.6 | Plus |
CG17725-PA | 1944 | Pepck-RA | 850..891 | 842..883 | 185 | 97.6 | Plus |
CG17725-PB | 1503 | Pepck-RB | 23..56 | 453..486 | 145 | 97 | Plus |
CG17725-PA | 1944 | Pepck-RA | 464..497 | 453..486 | 145 | 97 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10924-RA | 3449 | CG10924-RA | 337..1212 | 17..892 | 4350 | 99.8 | Plus |
CG10924-RB | 2019 | CG10924-RB | 67..908 | 51..892 | 4180 | 99.8 | Plus |
CG45087-RA | 2486 | CG45087-RA | 970..1166 | 691..887 | 565 | 85.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18532671..18533512 | 51..892 | 4180 | 99.8 | Plus |
2R | 25286936 | 2R | 18537900..18538096 | 691..887 | 565 | 85.8 | Plus |
2R | 25286936 | 2R | 18537665..18537800 | 453..588 | 320 | 82.4 | Plus |
2R | 25286936 | 2R | 18537481..18537533 | 269..321 | 190 | 90.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:25:08 has no hits.
BO11863.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:59 Download gff for
BO11863.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10924-PA | 1..874 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:47:39 Download gff for
BO11863.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10924-PA | 1..874 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:26:37 Download gff for
BO11863.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10924-RA | 335..1210 | 14..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:15:16 Download gff for
BO11863.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10924-RA | 335..1210 | 14..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:15:16 Download gff for
BO11863.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18527764..18527800 | 14..51 | 97 | -> | Plus |
2R | 18532672..18533510 | 52..890 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:26:37 Download gff for
BO11863.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14415269..14415305 | 14..51 | 97 | -> | Plus |
arm_2R | 14420177..14421015 | 52..890 | 99 | | Plus |
BO11863.complete Sequence
1948 bp assembled on 2008-01-17
GenBank Submission: FJ632223
> BO11863.complete
GAAGTTATCAGTCGACATGCTGCTCAAAGGCGCACAGCTGCTGCGATGCG
GATTGGTCTCACCACACCGGAACTCGAACTTCCGCCTGACCTGTCGCTTC
CTCTCCATTCAGTATGGAGATGCAAAGATCCTCACCCCTGCCGTCAAACA
GTACGTGGAAAAGTGCGTGGAGCTCTGCCAACCGGAAAGGGTGCACATCT
GTGATGGTACTGAGGTCGAGAGCAAGTTGCTCCAGGGCATCATGCTGAAG
AAGGGAACCATCATTCCTCTGCCGAAGTACGAGAATTGCTGGCTGGCAAG
AACCAATCCGGCGGATGTGGCTAGAGTGGAGGGAAAAACGTTCATCTCAA
CGGATTCGAAGGAGCAGACAGTACCGGTTACGGAGAAGGCCACACCGGGA
ATGCTGGGTAACTGGATAGCCGAAAAGGACATGCAGGCGGCGATCAAGGA
AAGATTCCCCGGCTGCATGAAAGGTCGCACCATGTATGTTATTCCTTTTA
GCATGGGTCCAGTGGGCTCACCTCTCTCCAAAATCGGAATCGAGATCACA
GACTCACCATACGTCGTCGAGTCCATGAAGATCATGACTAGGGCGGGCAA
TCCAGTGCTTAATTATCTGCAATCTGGGGATGGTCAGTTTGTCAAGTGCC
TGCATTCCGTGGGTACGCCCAAAAGTGGTGTCCAGGCAATGCCATCCTGG
CCCTGCGATCCCGAACGCACTATTGTGCTGCACAAGCCAGCAGAAAATGA
GATTGTATCTTATGGATCTGGGTATGGTGGTAACTCCCTGCTGGGCAAGA
AGTGCCTCGCTCTGAGGATTGGCAGCACCATTGCCAAACGAGAGGGCTGG
CTGGCCGAGCACATGTTGATACTGGGCATCACCAATCCGCAAGGTAAGAA
GATCTACATAGCTGCCGCCTTTCCATCAGCTTGCGGTAAGACCAACCTGG
CGATGATGACTCCTACCCTGCCTGGCTACAAAGTGGAGTGCGTGGGCGAT
GACATCGCCTGGATGAAGTTCGATAACAAGGGTGTGCTGCGAGCGATTAA
TCCGGAGAATGGATTCTTTGGCGTGGCGCCCGGAACGTCGAGGGCCACCA
ATCCCATAGCCATGGATACGATCTTCCGAAACTCTGTCTTTACGAACGTG
GCCTCTACATCCGATGGAGGTGTCTACTGGGAGGGAATGGAAAAGGATCA
GCTGAAGGGGGTGACTGTCACGGACTGGTTGGGTAAACTCTGGTCCCAGG
AATCCGGAAAGCCAGCTGCCCATCCCAACTCCAGGTTCTGTACACCCGCC
TCTCAGTGTCCCATTATTGATCCCGCCTGGGAGGATAGCGAAGGAGTGCC
CATCTCCGCAATTCTTTTCGGAGGTCGTCGTCCCAGTGGAGTTCCCTTGG
TTTACGAGGCTCGAGACTGGAAGCACGGCGTATTTATTGGAGCTGCTATG
AGGAGCGAGGCCACGGCAGCCGCTGAGTTCAAGGGCAAGGTCATCATGCA
CGATCCCTTCGCCATGAGACCCTTTTTCGGCTACAACTTCGGCGACTATC
TGGGTCACTGGCTAAGCATGGAGCAGCGTGGCCAGGTGCCCAAGATCTTT
CACGTAAATTGGTTCCGAAAGAGCAGTGAGGGCAAGTTCCTTTGGCCCGG
ATTCGGGGAGAACTCACGAGTCCTGGACTGGATCTTCCGGCGGGTGGAGG
GCGAGCAGTGCTTCGAGGACTCTCCCATTGGCCGCCTGCCCAGCAAGAAT
TCATTGAACTTGGATAGTTTGGAAAACATTGATCTCGACCAGCTTTTCGA
TCTGCCAAAAGATTTCTGGGAGCAGGAGGTGGCTGCCATAGAGAGGTACT
TCGAGGAGCAGGTGGGCCACCATCTGCCAGGTGCCGTGGCCGAGGAGCTG
AGGGAGCTGAAGGCGCGTGTTGCTGACATGGCAAGCTTTCTAGACCAT
BO11863.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:45:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10924-RA | 1917 | CG10924-PA | 1..1914 | 17..1930 | 9555 | 99.9 | Plus |
CG10924-RB | 1692 | CG10924-PB | 1..1689 | 242..1930 | 8430 | 99.9 | Plus |
Pepck-RA | 1944 | CG17725-PA | 699..1739 | 691..1731 | 1920 | 79 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:45:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10924-RA | 3449 | CG10924-RA | 337..2250 | 17..1930 | 9555 | 99.9 | Plus |
CG10924-RB | 2019 | CG10924-RB | 67..1946 | 51..1930 | 9385 | 99.9 | Plus |
CG45087-RA | 2486 | CG45087-RA | 970..2010 | 691..1731 | 1920 | 79 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:45:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18532671..18534550 | 51..1930 | 9385 | 99.9 | Plus |
2R | 25286936 | 2R | 18537900..18538940 | 691..1731 | 1920 | 79 | Plus |
2R | 25286936 | 2R | 18537665..18537800 | 453..588 | 320 | 82.4 | Plus |
2R | 25286936 | 2R | 18537481..18537533 | 269..321 | 190 | 90.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:45:41 has no hits.
BO11863.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:26 Download gff for
BO11863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10924-RA | 1..1917 | 17..1933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:40 Download gff for
BO11863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10924-RA | 335..2248 | 17..1932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:51 Download gff for
BO11863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10924-RA | 337..2250 | 17..1932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:26 Download gff for
BO11863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10924-RA | 333..2248 | 14..1930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:54 Download gff for
BO11863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10924-RA | 337..2250 | 17..1932 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:54 Download gff for
BO11863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18527766..18527800 | 17..51 | 100 | -> | Plus |
2R | 18532672..18534550 | 52..1932 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:51 Download gff for
BO11863.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14415271..14415305 | 17..51 | 100 | -> | Plus |
arm_2R | 14420177..14422055 | 52..1932 | 99 | | Plus |
BO11863.pep Sequence
Translation from 16 to 1948
> BO11863.pep
MLLKGAQLLRCGLVSPHRNSNFRLTCRFLSIQYGDAKILTPAVKQYVEKC
VELCQPERVHICDGTEVESKLLQGIMLKKGTIIPLPKYENCWLARTNPAD
VARVEGKTFISTDSKEQTVPVTEKATPGMLGNWIAEKDMQAAIKERFPGC
MKGRTMYVIPFSMGPVGSPLSKIGIEITDSPYVVESMKIMTRAGNPVLNY
LQSGDGQFVKCLHSVGTPKSGVQAMPSWPCDPERTIVLHKPAENEIVSYG
SGYGGNSLLGKKCLALRIGSTIAKREGWLAEHMLILGITNPQGKKIYIAA
AFPSACGKTNLAMMTPTLPGYKVECVGDDIAWMKFDNKGVLRAINPENGF
FGVAPGTSRATNPIAMDTIFRNSVFTNVASTSDGGVYWEGMEKDQLKGVT
VTDWLGKLWSQESGKPAAHPNSRFCTPASQCPIIDPAWEDSEGVPISAIL
FGGRRPSGVPLVYEARDWKHGVFIGAAMRSEATAAAEFKGKVIMHDPFAM
RPFFGYNFGDYLGHWLSMEQRGQVPKIFHVNWFRKSSEGKFLWPGFGENS
RVLDWIFRRVEGEQCFEDSPIGRLPSKNSLNLDSLENIDLDQLFDLPKDF
WEQEVAAIERYFEEQVGHHLPGAVAEELRELKARVADMASFLDH
BO11863.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:27:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10924-PA | 638 | CG10924-PA | 1..638 | 1..638 | 3416 | 100 | Plus |
CG10924-PB | 563 | CG10924-PB | 1..563 | 76..638 | 3022 | 100 | Plus |
Pepck-PA | 647 | CG17725-PA | 16..647 | 11..638 | 2447 | 70 | Plus |