Clone BO11863 Report

Search the DGRC for BO11863

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:118
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptCG10924-RA
Protein status:BO11863.pep:
Sequenced Size:1948

Clone Sequence Records

BO11863.3prime Sequence

870 bp (767 high quality bases) assembled on 2006-04-19

> BO11863.3prime
ATGGTCTAGAAAGCTTGCCATGTCAGCAACACGCGCCTTCAGCTCCCTCA
GCTCCTCGGCCACGGCACCTGGCAGATGGTGGCCCACCTGCTCCTCGAAG
TACCTCTCTATGGCAGCCACCTCCTGCTCCCAGAAATCTTTTGGCAGATC
GAAAAGCTGGTCGAGATCAATGTTTTCCAAACTATCCAAGTTCAATGAAT
TCTTGCTGGGCAGGCGGCCAATGGGAGAGTCCTCGAAGCACTGCTCGCCC
TCCACCCGCCGGAAGATCCAGTCCAGGACTCGTGAGTTCTCCCCGAATCC
GGGCCAAAGGAACTTGCCCTCACTGCTCTTTCGGAACCAATTTACGTGAA
AGATCTTGGGCACCTGGCCACGCTGCTCCATGCTTAGCCAGTGACCCAGA
TAGTCGCCGAAGTTGTAGCCGAAAAAGGGTCTCATGGCGAAGGGATCGTG
CATGATGACCTTGCCCTTGAACTCAGCGGCTGCCGTGGCCTCGCTCCTCA
TAGCAGCTCCAATAAATACGCCGTGCTTCCAGTCTCGAGCCTCGTAAACC
AAGGGAACTCCACTGGGACGACGACCTCCGAAAAGAATTGCGGAGATGGG
CACTCCTTCGCTATCCTCCCAGGCGGGATCAATAATGGGACACTGAGAGG
CGGGTGTACAGAACCTGGAGTTGGGATGGGCAGCTGGCTTTCCGGATTCC
TGGGACCAGAGTTTACCCAACCAGTCCGTGACAGTCACCCCCTTCAGCTG
ATCCTTTTCCATTCCCTCCCAGTAGACACCTCCATCGGATGTAGAGGCCA
CGTTCGTAAAGACAGAGTTTCGGAAGATCGTATCCATGGCTATGGGAATG
GGTGGCCCTCGACGTTCCGG

BO11863.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG10924-PA 1917 CG10924-RA 1086..1914 847..19 4145 100 Minus
CG17725-PB 1503 Pepck-RB 1047..1115 469..401 195 91.3 Minus
CG17725-PA 1944 Pepck-RA 1488..1556 469..401 195 91.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG10924-RB 2019 CG10924-RB 1096..1946 870..19 4220 99.8 Minus
CG10924-RA 3449 CG10924-RA 1400..2250 870..19 4220 99.8 Minus
CG45087-RA 2486 CG45087-RA 1497..2010 731..218 1055 80.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:16:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18533700..18534550 870..19 4195 99.8 Minus
2R 25286936 2R 18538427..18538940 731..218 1055 80.4 Minus
Blast to na_te.dros performed on 2015-02-11 11:16:46 has no hits.

BO11863.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:58 Download gff for BO11863.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10924-PA 1064..1917 16..870 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:47:38 Download gff for BO11863.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10924-PA 1064..1917 16..870 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:38:40 Download gff for BO11863.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10924-RA 1400..2250 19..870 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:51:22 Download gff for BO11863.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10924-RA 1400..2250 19..870 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:51:22 Download gff for BO11863.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18533700..18534550 19..870 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:38:40 Download gff for BO11863.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14421205..14422055 19..870 99   Minus

BO11863.5prime Sequence

892 bp (779 high quality bases) assembled on 2006-04-19

> BO11863.5prime
GAAGTTATCAGTCGACATGCTGCTCAAAGGCGCACAGCTGCTGCGATGCG
GATTGGTCTCACCACACCGGAACTCGAACTTCCGCCTGACCTGTCGCTTC
CTCTCCATTCAGTATGGAGATGCAAAGATCCTCACCCCTGCCGTCAAACA
GTACGTGGAAAAGTGCGTGGAGCTCTGCCAACCGGAAAGGGTGCACATCT
GTGATGGTACTGAGGTCGAGAGCAAGTTGCTCCAGGGCATCATGCTGAAG
AAGGGAACCATCATTCCTCTGCCGAAGTACGAGAATTGCTGGCTGGCAAG
AACCAATCCGGCGGATGTGGCTAGAGTGGAGGGAAAAACGTTCATCTCAA
CGGATTCGAAGGAGCAGACAGTACCGGTTACGGAGAAGGCCACACCGGGA
ATGCTGGGTAACTGGATAGCCGAAAAGGACATGCAGGCGGCGATCAAGGA
AAGATTCCCCGGCTGCATGAAAGGTCGCACCATGTATGTTATTCCTTTTA
GCATGGGTCCAGTGGGCTCACCTCTCTCCAAAATCGGAATCGAGATCACA
GACTCACCATACGTCGTCGAGTCCATGAAGATCATGACTAGGGCGGGCAA
TCCAGTGCTTAATTATCTGCAATCTGGGGATGGTCAGTTTGTCAAGTGCC
TGCATTCCGTGGGTACGCCCAAAAGTGGTGTCCAGGCAATGCCATCCTGG
CCCTGCGATCCCGAACGCACTATTGTGCTGCACAAGCCAGCAGAAAATGA
GATTGTATCTTATGGATCTGGGTATGGTGGTAACTCCCTGCTGGGCAAGA
AGTGCCTCGCTCTGAGGATTGGCAGCACCATTGCCAAACGAGAGGGCTGG
CTGGCCGAGCACATGTTGATACTGGGCATCACCAATCGGCAA

BO11863.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG10924-PA 1917 CG10924-RA 1..871 17..887 4330 99.8 Plus
CG17725-PB 1503 Pepck-RB 349..404 782..837 205 94.6 Plus
CG17725-PA 1944 Pepck-RA 790..845 782..837 205 94.6 Plus
CG17725-PB 1503 Pepck-RB 409..450 842..883 185 97.6 Plus
CG17725-PA 1944 Pepck-RA 850..891 842..883 185 97.6 Plus
CG17725-PB 1503 Pepck-RB 23..56 453..486 145 97 Plus
CG17725-PA 1944 Pepck-RA 464..497 453..486 145 97 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG10924-RA 3449 CG10924-RA 337..1212 17..892 4350 99.8 Plus
CG10924-RB 2019 CG10924-RB 67..908 51..892 4180 99.8 Plus
CG45087-RA 2486 CG45087-RA 970..1166 691..887 565 85.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18532671..18533512 51..892 4180 99.8 Plus
2R 25286936 2R 18537900..18538096 691..887 565 85.8 Plus
2R 25286936 2R 18537665..18537800 453..588 320 82.4 Plus
2R 25286936 2R 18537481..18537533 269..321 190 90.6 Plus
Blast to na_te.dros performed on 2015-02-12 13:25:08 has no hits.

BO11863.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:18:59 Download gff for BO11863.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10924-PA 1..874 17..890 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:47:39 Download gff for BO11863.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10924-PA 1..874 17..890 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:26:37 Download gff for BO11863.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10924-RA 335..1210 14..890 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:15:16 Download gff for BO11863.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10924-RA 335..1210 14..890 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:15:16 Download gff for BO11863.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18527764..18527800 14..51 97 -> Plus
2R 18532672..18533510 52..890 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:26:37 Download gff for BO11863.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14415269..14415305 14..51 97 -> Plus
arm_2R 14420177..14421015 52..890 99   Plus

BO11863.complete Sequence

1948 bp assembled on 2008-01-17

GenBank Submission: FJ632223

> BO11863.complete
GAAGTTATCAGTCGACATGCTGCTCAAAGGCGCACAGCTGCTGCGATGCG
GATTGGTCTCACCACACCGGAACTCGAACTTCCGCCTGACCTGTCGCTTC
CTCTCCATTCAGTATGGAGATGCAAAGATCCTCACCCCTGCCGTCAAACA
GTACGTGGAAAAGTGCGTGGAGCTCTGCCAACCGGAAAGGGTGCACATCT
GTGATGGTACTGAGGTCGAGAGCAAGTTGCTCCAGGGCATCATGCTGAAG
AAGGGAACCATCATTCCTCTGCCGAAGTACGAGAATTGCTGGCTGGCAAG
AACCAATCCGGCGGATGTGGCTAGAGTGGAGGGAAAAACGTTCATCTCAA
CGGATTCGAAGGAGCAGACAGTACCGGTTACGGAGAAGGCCACACCGGGA
ATGCTGGGTAACTGGATAGCCGAAAAGGACATGCAGGCGGCGATCAAGGA
AAGATTCCCCGGCTGCATGAAAGGTCGCACCATGTATGTTATTCCTTTTA
GCATGGGTCCAGTGGGCTCACCTCTCTCCAAAATCGGAATCGAGATCACA
GACTCACCATACGTCGTCGAGTCCATGAAGATCATGACTAGGGCGGGCAA
TCCAGTGCTTAATTATCTGCAATCTGGGGATGGTCAGTTTGTCAAGTGCC
TGCATTCCGTGGGTACGCCCAAAAGTGGTGTCCAGGCAATGCCATCCTGG
CCCTGCGATCCCGAACGCACTATTGTGCTGCACAAGCCAGCAGAAAATGA
GATTGTATCTTATGGATCTGGGTATGGTGGTAACTCCCTGCTGGGCAAGA
AGTGCCTCGCTCTGAGGATTGGCAGCACCATTGCCAAACGAGAGGGCTGG
CTGGCCGAGCACATGTTGATACTGGGCATCACCAATCCGCAAGGTAAGAA
GATCTACATAGCTGCCGCCTTTCCATCAGCTTGCGGTAAGACCAACCTGG
CGATGATGACTCCTACCCTGCCTGGCTACAAAGTGGAGTGCGTGGGCGAT
GACATCGCCTGGATGAAGTTCGATAACAAGGGTGTGCTGCGAGCGATTAA
TCCGGAGAATGGATTCTTTGGCGTGGCGCCCGGAACGTCGAGGGCCACCA
ATCCCATAGCCATGGATACGATCTTCCGAAACTCTGTCTTTACGAACGTG
GCCTCTACATCCGATGGAGGTGTCTACTGGGAGGGAATGGAAAAGGATCA
GCTGAAGGGGGTGACTGTCACGGACTGGTTGGGTAAACTCTGGTCCCAGG
AATCCGGAAAGCCAGCTGCCCATCCCAACTCCAGGTTCTGTACACCCGCC
TCTCAGTGTCCCATTATTGATCCCGCCTGGGAGGATAGCGAAGGAGTGCC
CATCTCCGCAATTCTTTTCGGAGGTCGTCGTCCCAGTGGAGTTCCCTTGG
TTTACGAGGCTCGAGACTGGAAGCACGGCGTATTTATTGGAGCTGCTATG
AGGAGCGAGGCCACGGCAGCCGCTGAGTTCAAGGGCAAGGTCATCATGCA
CGATCCCTTCGCCATGAGACCCTTTTTCGGCTACAACTTCGGCGACTATC
TGGGTCACTGGCTAAGCATGGAGCAGCGTGGCCAGGTGCCCAAGATCTTT
CACGTAAATTGGTTCCGAAAGAGCAGTGAGGGCAAGTTCCTTTGGCCCGG
ATTCGGGGAGAACTCACGAGTCCTGGACTGGATCTTCCGGCGGGTGGAGG
GCGAGCAGTGCTTCGAGGACTCTCCCATTGGCCGCCTGCCCAGCAAGAAT
TCATTGAACTTGGATAGTTTGGAAAACATTGATCTCGACCAGCTTTTCGA
TCTGCCAAAAGATTTCTGGGAGCAGGAGGTGGCTGCCATAGAGAGGTACT
TCGAGGAGCAGGTGGGCCACCATCTGCCAGGTGCCGTGGCCGAGGAGCTG
AGGGAGCTGAAGGCGCGTGTTGCTGACATGGCAAGCTTTCTAGACCAT

BO11863.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG10924-RA 1917 CG10924-PA 1..1914 17..1930 9555 99.9 Plus
CG10924-RB 1692 CG10924-PB 1..1689 242..1930 8430 99.9 Plus
Pepck-RA 1944 CG17725-PA 699..1739 691..1731 1920 79 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG10924-RA 3449 CG10924-RA 337..2250 17..1930 9555 99.9 Plus
CG10924-RB 2019 CG10924-RB 67..1946 51..1930 9385 99.9 Plus
CG45087-RA 2486 CG45087-RA 970..2010 691..1731 1920 79 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:45:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18532671..18534550 51..1930 9385 99.9 Plus
2R 25286936 2R 18537900..18538940 691..1731 1920 79 Plus
2R 25286936 2R 18537665..18537800 453..588 320 82.4 Plus
2R 25286936 2R 18537481..18537533 269..321 190 90.6 Plus
Blast to na_te.dros performed on 2014-11-27 15:45:41 has no hits.

BO11863.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:26 Download gff for BO11863.complete
Subject Subject Range Query Range Percent Splice Strand
CG10924-RA 1..1917 17..1933 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:40 Download gff for BO11863.complete
Subject Subject Range Query Range Percent Splice Strand
CG10924-RA 335..2248 17..1932 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:51 Download gff for BO11863.complete
Subject Subject Range Query Range Percent Splice Strand
CG10924-RA 337..2250 17..1932 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:26 Download gff for BO11863.complete
Subject Subject Range Query Range Percent Splice Strand
CG10924-RA 333..2248 14..1930 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:54 Download gff for BO11863.complete
Subject Subject Range Query Range Percent Splice Strand
CG10924-RA 337..2250 17..1932 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:54 Download gff for BO11863.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18527766..18527800 17..51 100 -> Plus
2R 18532672..18534550 52..1932 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:51 Download gff for BO11863.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14415271..14415305 17..51 100 -> Plus
arm_2R 14420177..14422055 52..1932 99   Plus

BO11863.pep Sequence

Translation from 16 to 1948

> BO11863.pep
MLLKGAQLLRCGLVSPHRNSNFRLTCRFLSIQYGDAKILTPAVKQYVEKC
VELCQPERVHICDGTEVESKLLQGIMLKKGTIIPLPKYENCWLARTNPAD
VARVEGKTFISTDSKEQTVPVTEKATPGMLGNWIAEKDMQAAIKERFPGC
MKGRTMYVIPFSMGPVGSPLSKIGIEITDSPYVVESMKIMTRAGNPVLNY
LQSGDGQFVKCLHSVGTPKSGVQAMPSWPCDPERTIVLHKPAENEIVSYG
SGYGGNSLLGKKCLALRIGSTIAKREGWLAEHMLILGITNPQGKKIYIAA
AFPSACGKTNLAMMTPTLPGYKVECVGDDIAWMKFDNKGVLRAINPENGF
FGVAPGTSRATNPIAMDTIFRNSVFTNVASTSDGGVYWEGMEKDQLKGVT
VTDWLGKLWSQESGKPAAHPNSRFCTPASQCPIIDPAWEDSEGVPISAIL
FGGRRPSGVPLVYEARDWKHGVFIGAAMRSEATAAAEFKGKVIMHDPFAM
RPFFGYNFGDYLGHWLSMEQRGQVPKIFHVNWFRKSSEGKFLWPGFGENS
RVLDWIFRRVEGEQCFEDSPIGRLPSKNSLNLDSLENIDLDQLFDLPKDF
WEQEVAAIERYFEEQVGHHLPGAVAEELRELKARVADMASFLDH

BO11863.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:27:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG10924-PA 638 CG10924-PA 1..638 1..638 3416 100 Plus
CG10924-PB 563 CG10924-PB 1..563 76..638 3022 100 Plus
Pepck-PA 647 CG17725-PA 16..647 11..638 2447 70 Plus