Clone BO11866 Report

Search the DGRC for BO11866

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:118
Well:66
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO11866.pep:
Sequenced Size:1840

Clone Sequence Records

BO11866.3prime Sequence

879 bp (786 high quality bases) assembled on 2006-04-19

> BO11866.3prime
ATGGTCTAGAAAGCTTGCTTTATCCCCCTTGCTACTGTTTGAAGTTTTAC
GCTGTCGGTGCTGCAGAAGCTCCTGGTATTGCTCTATGGATCCGTCTTCA
TGCTTGGAAGTAAATGAATCCGGCTTTTCAACCTTGGCCTGCTCCTCGCC
GGCGGTGACTTTGGTGCGCTTCGATTTCTTGAGCTTGTCACGGACGCGTT
TTCCCAAACGCGATTCGGCCAGCACCTGGCTGACCTTGGAGCTCTTCATG
TAGCGTGAACGCCAGGACTCGGAGTCTGCCTGCTGTAGTTTGTCGCGTTC
ATCCTCGCTTGTGTCCAGGGATATGACATCGTTGTCCAGTTCCTCAGGAT
CCTGCATCTTCTCCTTTTTCTCGCTTTTAATGCTTACCCAAGGTGAATCG
TCATCCTTCGTCATTTCCTCAATCATTTCTAGATCCCCACCTATTGAAAT
GACGTCGTCGTTTTGATCTTCGTCGTCAAGGGCAGTTGGCTCGGCTGCAC
TCGGCTTCTTTGGCTCTGCAGGGGGATTAGCTGGGAGAGCTTCTTCCGAC
GGTGGTTCCTTATCCCCTGTTTTATCTAGCTTATCAGACGTATCCGATAC
TTCTGGCTTATTACTTTCCAGTTCTTTCGAAATAGCTGCTGCTTCTGACT
CTGTTGGCTCATCTGGATTGGCTGGGTCAACTACCTTAGCTGGCTCTTCG
GGTTCATCGCGCACTTCTCCCTCCTCTGGCTCGCTCTCAACGACTGGGGC
TGGTGGGTCCGATTCGACTTGCTTAGTTGTAGTTGTTTCAGTTGTCTTCT
TTTTGGTGGCCTCATCATCCGTACTGTCGCTGATCAGCAGTGTTTCGGGT
TTCCGTTTGTATAGGTATCACATCTGGGG

BO11866.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG32176-PA 1746 CG32176-RA 911..1743 851..19 4165 100 Minus
CG32176-PA 1746 CG32176-RA 886..912 877..851 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:31:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG32176-RA 1928 CG32176-RA 955..1812 877..19 4270 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17436935..17437543 877..268 3000 99.8 Minus
3L 28110227 3L 17437605..17437855 269..19 1255 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:31:10 has no hits.

BO11866.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:04 Download gff for BO11866.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32176-PA 884..1746 15..879 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:47:47 Download gff for BO11866.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32176-PA 884..1746 15..879 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 12:55:28 Download gff for BO11866.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32176-RA 953..1821 6..879 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:49 Download gff for BO11866.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32176-RA 953..1821 6..879 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:49 Download gff for BO11866.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 17437607..17437864 6..267 98   Minus
3L 17436933..17437543 268..879 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 12:55:28 Download gff for BO11866.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17430033..17430643 268..879 99 -> Minus
arm_3L 17430707..17430964 6..267 98   Minus

BO11866.5prime Sequence

819 bp (735 high quality bases) assembled on 2006-04-19

> BO11866.5prime
GAAGTTATCAGTCGACATGGCAACGCTGCCCGAAAGACCGAAATTACTTG
GTTTTTATTTTGACAACAAATTGGATAAAATGAGTGGCTTGAAGGCGAAA
AAATCCAGCAAGGGCGACCAAATCCCCAAGCCCATTAGCATTAAGAAGGA
GAAGATCGAGGAGGAACGAAAGCTGCATCCCATGTCCCATTACATAGACG
ACCGCCTGGAATTGGTGAAACAGATATTTGGGACCTTAAAACCGAAAACC
ATTTTGAACCTAGCCCCAGAGTTTCTAAAGAAAACGCCACTAGACGAAAT
CGAGGAACTTTGTCTGGAGGAGTTACTCTGCTTGTCTACGAAGCGGCTAA
AATCCATAATAGAAAACACCAAATGTCCCACAGACACTGAAAGCTCCGAA
GATTCCGATGTGGAGCACAAAGAAGAACACATCTCGCTAGAGGAGATATC
ATCCGACAGCGACATCGGAGGTCAGGAATCCCGAAAAACCAAGAAGAAGC
TTAGATCCAAGAAAACGAACAATGGGAATGAAAACAAAGAGTCGGGTGGT
CAAATGAGCGTGCTGGAACTGTTGGAACTTCAGGCACGTGCCAGGGCCAT
CCGCTCCCAACTGGCAATGGAGCCAATCACCAAAATAGAGGTCAAGTCAG
ATGATGATATTGACGAAGTACCAGTGGAGAAAGTACAGCGAAAGGAAAAG
GATAAACGCAGCACTAAAAAAACGGATTCGAGCAAGCGCAAATCGCAGGA
ATCAGCTAGACCAACATCTCCATCCCACCCTGATAGCAGCAGCAAGGAGC
AAGAAACGCCCCCCCAAAA

BO11866.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG32176-PA 1746 CG32176-RA 1..733 80..812 3590 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:05:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG32176-RA 1928 CG32176-RA 8..802 18..812 3930 99.6 Plus
CG12229-RA 1960 CG12229-RA 55..108 542..489 270 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17433875..17434137 18..280 1315 100 Plus
3L 28110227 3L 17436513..17436782 543..812 1305 98.9 Plus
3L 28110227 3L 17434187..17434333 279..425 735 100 Plus
3L 28110227 3L 17434392..17434456 424..488 325 100 Plus
3L 28110227 3L 17436324..17436377 489..542 270 100 Plus
Blast to na_te.dros performed 2015-02-12 01:05:41
Subject Length Description Subject Range Query Range Score Percent Strand
Doc4-element 2791 Doc4-element DOC4 2791bp 774..850 210..289 122 66.7 Plus

BO11866.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:05 Download gff for BO11866.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32176-PA 1..735 80..815 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:47:48 Download gff for BO11866.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32176-PA 1..735 80..815 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:18:44 Download gff for BO11866.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32176-RA 3..804 10..815 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:57:49 Download gff for BO11866.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32176-RA 3..804 10..815 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:57:49 Download gff for BO11866.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17433870..17434137 10..280 98 -> Plus
3L 17434189..17434333 281..425 100 -> Plus
3L 17434394..17434456 426..488 100 -> Plus
3L 17436324..17436377 489..542 100 -> Plus
3L 17436513..17436784 543..815 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:18:44 Download gff for BO11866.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17426970..17427237 10..280 98 -> Plus
arm_3L 17427289..17427433 281..425 100 -> Plus
arm_3L 17427494..17427556 426..488 100 -> Plus
arm_3L 17429424..17429477 489..542 100 -> Plus
arm_3L 17429613..17429884 543..815 98   Plus

BO11866.complete Sequence

1840 bp assembled on 2008-01-17

GenBank Submission: FJ632224

> BO11866.complete
GAAGTTATCAGTCGACATGGCAACGCTGCCCGAAAGACCGAAATTACTTG
GTTTTTATTTTGACAACAAATTGGATAAAATGAGTGGCTTGAAGGCGAAA
AAATCCAGCAAGGGCGACCAAATCCCCAAGCCCATTAGCATTAAGAAGGA
GAAGATCGAGGAGGAACGAAAGCTGCATCCCATGTCCCATTACATAGACG
ACCGCCTGGAATTGGTGAAACAGATATTTGGGACCTTAAAACCGAAAACC
ATTTTGAACCTAGCCCCAGAGTTTCTAAAGAAAACGCCACTAGACGAAAT
CGAGGAACTTTGTCTGGAGGAGTTACTCTGCTTGTCTACGAAGCGGCTAA
AATCCATAATAGAAAACACCAAATGTCCCACAGACACTGAAAGCTCCGAA
GATTCCGATGTGGAGCACAAAGAAGAACACATCTCGCTAGAGGAGATATC
ATCCGACAGCGACATCGGAGGTCAGGAATCCCGAAAAACCAAGAAGAAGC
TTAGATCCAAGAAAACGAACAATGGGAATGAAAACAAAGAGTCGGGTGGT
CAAATGAGCGTGCTGGAACTGTTGGAACTTCAGGCACGTGCCAGGGCCAT
CCGCTCCCAACTGGCAATGGAGCCAATCACCAAAATAGAGGTCAAGTCAG
ATGATGATATTGACGAAGTACCAGTGGAGAAAGTACAGCGAAAGGAAAAG
GATAAACGCAGCACTAAAAAAACGGATTCGAGCAAGCGCAAATCGCAGGA
ATCAGCTAGACCAACATCTCCATCCCAGCCTGATAGCAGCAGCAAGGAGC
AGGAAGCGCCCCGCAAAAGAATCAAGATCAAAAGAAACTATAGGCGGACT
TCAAAGTCGCCAGAAAAGGAAGTCAAACCTCCAACATCTACTACTTCATC
CGAAACTTTGGTTGCATCTAACGATTTAAACAAACTGCCACGTTCCAAAT
CACGTTCAGCCTCACCAGATGTGATACCTATACAAACGGAACCCGAAACA
CTGCTGATCAGCGACAGTACGGATGATGAGGCCACCAAAAAGAAGACAAC
TGAAACAACTACAACTAAGCAAGTCGAATCGGACCCACCAGCCCCAGTCG
TTGAGAGCGAGCCAGAGGAGGGAGAAGTGCGCGATGAACCCGAAGAGCCA
GCTAAGGTAGTTGACCCAGCCAATCCAGATGAGCCAACAGAGTCAGAAGC
AGCAGCTATTTCGAAAGAACTGGAAAGTAATAAGCCAGAAGTATCGGATA
CGTCTGATAAGCTAGATAAAACAGGGGATAAGGAACCACCGTCGGAAGAA
GCTCTCCCAGCTAATCCCCCTGCAGAGCCAAAGAAGCCGAGTGCAGCCGA
GCCAACTGCCCTTGACGACGAAGATCAAAACGACGACGTCATTTCAATAG
GTGGGGATCTAGAAATGATTGAGGAAATGACGAAGGATGACGATTCACCT
TGGGTAAGCATTAAAAGCGAGAAAAAGGAGAAGATGCAGGATCCTGAGGA
ACTGGACAACGATGTCATATCCCTGGACACAAGCGAGGATGAACGCGACA
AACTACAGCAGGCAGACTCCGAGTCCTGGCGTTCACGCTACATGAAGAGC
TCCAAGGTCAGCCAGGTGCTGGCCGAATCGCGTTTGGGAAAACGCGTCCG
TGACAAGCTCAAGAAATCGAAGCGCACCAAAGTCACCGCCGGCGAGGAGC
AGGCCAAGGTTGAAAAGCCGGATTCATTTACTTCCAAGCATGAAGACGGA
TCCATAGAGCAATACCAGGAGCTTCTGCAGCACCGACAGCGTAAAACTTC
AAACAGTAGCAAGGGGGATAAAGCAAGCTTTCTAGACCAT

BO11866.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:30:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG32176-RA 1746 CG32176-PA 1..1743 80..1822 8715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:30:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG32176-RA 1928 CG32176-RA 8..1812 18..1822 9025 100 Plus
CG12229-RA 1960 CG12229-RA 55..108 542..489 270 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17436513..17437543 543..1573 5155 100 Plus
3L 28110227 3L 17433875..17434137 18..280 1315 100 Plus
3L 28110227 3L 17437605..17437855 1572..1822 1255 100 Plus
3L 28110227 3L 17434187..17434333 279..425 735 100 Plus
3L 28110227 3L 17434392..17434456 424..488 325 100 Plus
3L 28110227 3L 17436324..17436377 489..542 270 100 Plus
Blast to na_te.dros performed 2014-11-27 15:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
Doc4-element 2791 Doc4-element DOC4 2791bp 774..850 210..289 122 66.7 Plus

BO11866.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:27 Download gff for BO11866.complete
Subject Subject Range Query Range Percent Splice Strand
CG32176-RA 1..1746 80..1826 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:29 Download gff for BO11866.complete
Subject Subject Range Query Range Percent Splice Strand
CG32176-RA 4..1810 17..1824 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:12 Download gff for BO11866.complete
Subject Subject Range Query Range Percent Splice Strand
CG32176-RA 6..1812 17..1824 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:27 Download gff for BO11866.complete
Subject Subject Range Query Range Percent Splice Strand
CG32176-RA 1..1819 15..1835 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:33 Download gff for BO11866.complete
Subject Subject Range Query Range Percent Splice Strand
CG32176-RA 6..1812 17..1824 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:33 Download gff for BO11866.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17433873..17434137 17..280 99 -> Plus
3L 17434189..17434333 281..425 100 -> Plus
3L 17434394..17434456 426..488 100 -> Plus
3L 17436324..17436377 489..542 100 -> Plus
3L 17436513..17437543 543..1573 100 -> Plus
3L 17437607..17437855 1574..1824 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:12 Download gff for BO11866.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17426973..17427237 17..280 99 -> Plus
arm_3L 17427289..17427433 281..425 100 -> Plus
arm_3L 17427494..17427556 426..488 100 -> Plus
arm_3L 17429424..17429477 489..542 100 -> Plus
arm_3L 17429613..17430643 543..1573 100 -> Plus
arm_3L 17430707..17430955 1574..1824 99   Plus

BO11866.pep Sequence

Translation from 16 to 1840

> BO11866.pep
MATLPERPKLLGFYFDNKLDKMSGLKAKKSSKGDQIPKPISIKKEKIEEE
RKLHPMSHYIDDRLELVKQIFGTLKPKTILNLAPEFLKKTPLDEIEELCL
EELLCLSTKRLKSIIENTKCPTDTESSEDSDVEHKEEHISLEEISSDSDI
GGQESRKTKKKLRSKKTNNGNENKESGGQMSVLELLELQARARAIRSQLA
MEPITKIEVKSDDDIDEVPVEKVQRKEKDKRSTKKTDSSKRKSQESARPT
SPSQPDSSSKEQEAPRKRIKIKRNYRRTSKSPEKEVKPPTSTTSSETLVA
SNDLNKLPRSKSRSASPDVIPIQTEPETLLISDSTDDEATKKKTTETTTT
KQVESDPPAPVVESEPEEGEVRDEPEEPAKVVDPANPDEPTESEAAAISK
ELESNKPEVSDTSDKLDKTGDKEPPSEEALPANPPAEPKKPSAAEPTALD
DEDQNDDVISIGGDLEMIEEMTKDDDSPWVSIKSEKKEKMQDPEELDNDV
ISLDTSEDERDKLQQADSESWRSRYMKSSKVSQVLAESRLGKRVRDKLKK
SKRTKVTAGEEQAKVEKPDSFTSKHEDGSIEQYQELLQHRQRKTSNSSKG
DKASFLDH

BO11866.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:27:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG32176-PA 581 CG32176-PA 1..581 22..602 2928 100 Plus
Strn-Mlck-PT 7905 CG44162-PT 3851..4431 20..597 214 21.4 Plus
Strn-Mlck-PV 7944 CG44162-PV 3890..4470 20..597 214 21.4 Plus
Strn-Mlck-PS 8216 CG44162-PS 3851..4431 20..597 214 21.4 Plus
Strn-Mlck-PU 8255 CG44162-PU 3890..4470 20..597 214 21.4 Plus
Strn-Mlck-PT 7905 CG44162-PT 4566..5144 20..585 212 21.9 Plus
Strn-Mlck-PV 7944 CG44162-PV 4605..5183 20..585 212 21.9 Plus
Strn-Mlck-PS 8216 CG44162-PS 4566..5144 20..585 212 21.9 Plus
Strn-Mlck-PT 7905 CG44162-PT 4241..4821 20..597 196 20.6 Plus
Strn-Mlck-PV 7944 CG44162-PV 4280..4860 20..597 196 20.6 Plus
Strn-Mlck-PS 8216 CG44162-PS 4241..4821 20..597 196 20.6 Plus
Strn-Mlck-PT 7905 CG44162-PT 3426..3968 52..582 194 21.7 Plus
Strn-Mlck-PV 7944 CG44162-PV 3465..4007 52..582 194 21.7 Plus
Strn-Mlck-PS 8216 CG44162-PS 3426..3968 52..582 194 21.7 Plus
Strn-Mlck-PT 7905 CG44162-PT 4761..5247 20..499 161 19.5 Plus
Strn-Mlck-PV 7944 CG44162-PV 4800..5286 20..499 161 19.5 Plus
Strn-Mlck-PS 8216 CG44162-PS 4761..5247 20..499 161 19.5 Plus
Strn-Mlck-PT 7905 CG44162-PT 2734..3248 38..539 159 22.2 Plus
Strn-Mlck-PV 7944 CG44162-PV 2773..3287 38..539 159 22.2 Plus
Strn-Mlck-PS 8216 CG44162-PS 2734..3248 38..539 159 22.2 Plus