Clone Sequence Records
BO11866.3prime Sequence
879 bp (786 high quality bases) assembled on 2006-04-19
> BO11866.3prime
ATGGTCTAGAAAGCTTGCTTTATCCCCCTTGCTACTGTTTGAAGTTTTAC
GCTGTCGGTGCTGCAGAAGCTCCTGGTATTGCTCTATGGATCCGTCTTCA
TGCTTGGAAGTAAATGAATCCGGCTTTTCAACCTTGGCCTGCTCCTCGCC
GGCGGTGACTTTGGTGCGCTTCGATTTCTTGAGCTTGTCACGGACGCGTT
TTCCCAAACGCGATTCGGCCAGCACCTGGCTGACCTTGGAGCTCTTCATG
TAGCGTGAACGCCAGGACTCGGAGTCTGCCTGCTGTAGTTTGTCGCGTTC
ATCCTCGCTTGTGTCCAGGGATATGACATCGTTGTCCAGTTCCTCAGGAT
CCTGCATCTTCTCCTTTTTCTCGCTTTTAATGCTTACCCAAGGTGAATCG
TCATCCTTCGTCATTTCCTCAATCATTTCTAGATCCCCACCTATTGAAAT
GACGTCGTCGTTTTGATCTTCGTCGTCAAGGGCAGTTGGCTCGGCTGCAC
TCGGCTTCTTTGGCTCTGCAGGGGGATTAGCTGGGAGAGCTTCTTCCGAC
GGTGGTTCCTTATCCCCTGTTTTATCTAGCTTATCAGACGTATCCGATAC
TTCTGGCTTATTACTTTCCAGTTCTTTCGAAATAGCTGCTGCTTCTGACT
CTGTTGGCTCATCTGGATTGGCTGGGTCAACTACCTTAGCTGGCTCTTCG
GGTTCATCGCGCACTTCTCCCTCCTCTGGCTCGCTCTCAACGACTGGGGC
TGGTGGGTCCGATTCGACTTGCTTAGTTGTAGTTGTTTCAGTTGTCTTCT
TTTTGGTGGCCTCATCATCCGTACTGTCGCTGATCAGCAGTGTTTCGGGT
TTCCGTTTGTATAGGTATCACATCTGGGG
BO11866.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32176-PA | 1746 | CG32176-RA | 911..1743 | 851..19 | 4165 | 100 | Minus |
CG32176-PA | 1746 | CG32176-RA | 886..912 | 877..851 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:31:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32176-RA | 1928 | CG32176-RA | 955..1812 | 877..19 | 4270 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:31:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17436935..17437543 | 877..268 | 3000 | 99.8 | Minus |
3L | 28110227 | 3L | 17437605..17437855 | 269..19 | 1255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:31:10 has no hits.
BO11866.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:04 Download gff for
BO11866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32176-PA | 884..1746 | 15..879 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:47:47 Download gff for
BO11866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32176-PA | 884..1746 | 15..879 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 12:55:28 Download gff for
BO11866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32176-RA | 953..1821 | 6..879 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:49 Download gff for
BO11866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32176-RA | 953..1821 | 6..879 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:49 Download gff for
BO11866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17437607..17437864 | 6..267 | 98 | | Minus |
3L | 17436933..17437543 | 268..879 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 12:55:28 Download gff for
BO11866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17430033..17430643 | 268..879 | 99 | -> | Minus |
arm_3L | 17430707..17430964 | 6..267 | 98 | | Minus |
BO11866.5prime Sequence
819 bp (735 high quality bases) assembled on 2006-04-19
> BO11866.5prime
GAAGTTATCAGTCGACATGGCAACGCTGCCCGAAAGACCGAAATTACTTG
GTTTTTATTTTGACAACAAATTGGATAAAATGAGTGGCTTGAAGGCGAAA
AAATCCAGCAAGGGCGACCAAATCCCCAAGCCCATTAGCATTAAGAAGGA
GAAGATCGAGGAGGAACGAAAGCTGCATCCCATGTCCCATTACATAGACG
ACCGCCTGGAATTGGTGAAACAGATATTTGGGACCTTAAAACCGAAAACC
ATTTTGAACCTAGCCCCAGAGTTTCTAAAGAAAACGCCACTAGACGAAAT
CGAGGAACTTTGTCTGGAGGAGTTACTCTGCTTGTCTACGAAGCGGCTAA
AATCCATAATAGAAAACACCAAATGTCCCACAGACACTGAAAGCTCCGAA
GATTCCGATGTGGAGCACAAAGAAGAACACATCTCGCTAGAGGAGATATC
ATCCGACAGCGACATCGGAGGTCAGGAATCCCGAAAAACCAAGAAGAAGC
TTAGATCCAAGAAAACGAACAATGGGAATGAAAACAAAGAGTCGGGTGGT
CAAATGAGCGTGCTGGAACTGTTGGAACTTCAGGCACGTGCCAGGGCCAT
CCGCTCCCAACTGGCAATGGAGCCAATCACCAAAATAGAGGTCAAGTCAG
ATGATGATATTGACGAAGTACCAGTGGAGAAAGTACAGCGAAAGGAAAAG
GATAAACGCAGCACTAAAAAAACGGATTCGAGCAAGCGCAAATCGCAGGA
ATCAGCTAGACCAACATCTCCATCCCACCCTGATAGCAGCAGCAAGGAGC
AAGAAACGCCCCCCCAAAA
BO11866.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32176-PA | 1746 | CG32176-RA | 1..733 | 80..812 | 3590 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:05:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32176-RA | 1928 | CG32176-RA | 8..802 | 18..812 | 3930 | 99.6 | Plus |
CG12229-RA | 1960 | CG12229-RA | 55..108 | 542..489 | 270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:05:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17433875..17434137 | 18..280 | 1315 | 100 | Plus |
3L | 28110227 | 3L | 17436513..17436782 | 543..812 | 1305 | 98.9 | Plus |
3L | 28110227 | 3L | 17434187..17434333 | 279..425 | 735 | 100 | Plus |
3L | 28110227 | 3L | 17434392..17434456 | 424..488 | 325 | 100 | Plus |
3L | 28110227 | 3L | 17436324..17436377 | 489..542 | 270 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 01:05:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc4-element | 2791 | Doc4-element DOC4 2791bp | 774..850 | 210..289 | 122 | 66.7 | Plus |
BO11866.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:05 Download gff for
BO11866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32176-PA | 1..735 | 80..815 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:47:48 Download gff for
BO11866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32176-PA | 1..735 | 80..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:18:44 Download gff for
BO11866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32176-RA | 3..804 | 10..815 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:57:49 Download gff for
BO11866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32176-RA | 3..804 | 10..815 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:57:49 Download gff for
BO11866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17433870..17434137 | 10..280 | 98 | -> | Plus |
3L | 17434189..17434333 | 281..425 | 100 | -> | Plus |
3L | 17434394..17434456 | 426..488 | 100 | -> | Plus |
3L | 17436324..17436377 | 489..542 | 100 | -> | Plus |
3L | 17436513..17436784 | 543..815 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:18:44 Download gff for
BO11866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17426970..17427237 | 10..280 | 98 | -> | Plus |
arm_3L | 17427289..17427433 | 281..425 | 100 | -> | Plus |
arm_3L | 17427494..17427556 | 426..488 | 100 | -> | Plus |
arm_3L | 17429424..17429477 | 489..542 | 100 | -> | Plus |
arm_3L | 17429613..17429884 | 543..815 | 98 | | Plus |
BO11866.complete Sequence
1840 bp assembled on 2008-01-17
GenBank Submission: FJ632224
> BO11866.complete
GAAGTTATCAGTCGACATGGCAACGCTGCCCGAAAGACCGAAATTACTTG
GTTTTTATTTTGACAACAAATTGGATAAAATGAGTGGCTTGAAGGCGAAA
AAATCCAGCAAGGGCGACCAAATCCCCAAGCCCATTAGCATTAAGAAGGA
GAAGATCGAGGAGGAACGAAAGCTGCATCCCATGTCCCATTACATAGACG
ACCGCCTGGAATTGGTGAAACAGATATTTGGGACCTTAAAACCGAAAACC
ATTTTGAACCTAGCCCCAGAGTTTCTAAAGAAAACGCCACTAGACGAAAT
CGAGGAACTTTGTCTGGAGGAGTTACTCTGCTTGTCTACGAAGCGGCTAA
AATCCATAATAGAAAACACCAAATGTCCCACAGACACTGAAAGCTCCGAA
GATTCCGATGTGGAGCACAAAGAAGAACACATCTCGCTAGAGGAGATATC
ATCCGACAGCGACATCGGAGGTCAGGAATCCCGAAAAACCAAGAAGAAGC
TTAGATCCAAGAAAACGAACAATGGGAATGAAAACAAAGAGTCGGGTGGT
CAAATGAGCGTGCTGGAACTGTTGGAACTTCAGGCACGTGCCAGGGCCAT
CCGCTCCCAACTGGCAATGGAGCCAATCACCAAAATAGAGGTCAAGTCAG
ATGATGATATTGACGAAGTACCAGTGGAGAAAGTACAGCGAAAGGAAAAG
GATAAACGCAGCACTAAAAAAACGGATTCGAGCAAGCGCAAATCGCAGGA
ATCAGCTAGACCAACATCTCCATCCCAGCCTGATAGCAGCAGCAAGGAGC
AGGAAGCGCCCCGCAAAAGAATCAAGATCAAAAGAAACTATAGGCGGACT
TCAAAGTCGCCAGAAAAGGAAGTCAAACCTCCAACATCTACTACTTCATC
CGAAACTTTGGTTGCATCTAACGATTTAAACAAACTGCCACGTTCCAAAT
CACGTTCAGCCTCACCAGATGTGATACCTATACAAACGGAACCCGAAACA
CTGCTGATCAGCGACAGTACGGATGATGAGGCCACCAAAAAGAAGACAAC
TGAAACAACTACAACTAAGCAAGTCGAATCGGACCCACCAGCCCCAGTCG
TTGAGAGCGAGCCAGAGGAGGGAGAAGTGCGCGATGAACCCGAAGAGCCA
GCTAAGGTAGTTGACCCAGCCAATCCAGATGAGCCAACAGAGTCAGAAGC
AGCAGCTATTTCGAAAGAACTGGAAAGTAATAAGCCAGAAGTATCGGATA
CGTCTGATAAGCTAGATAAAACAGGGGATAAGGAACCACCGTCGGAAGAA
GCTCTCCCAGCTAATCCCCCTGCAGAGCCAAAGAAGCCGAGTGCAGCCGA
GCCAACTGCCCTTGACGACGAAGATCAAAACGACGACGTCATTTCAATAG
GTGGGGATCTAGAAATGATTGAGGAAATGACGAAGGATGACGATTCACCT
TGGGTAAGCATTAAAAGCGAGAAAAAGGAGAAGATGCAGGATCCTGAGGA
ACTGGACAACGATGTCATATCCCTGGACACAAGCGAGGATGAACGCGACA
AACTACAGCAGGCAGACTCCGAGTCCTGGCGTTCACGCTACATGAAGAGC
TCCAAGGTCAGCCAGGTGCTGGCCGAATCGCGTTTGGGAAAACGCGTCCG
TGACAAGCTCAAGAAATCGAAGCGCACCAAAGTCACCGCCGGCGAGGAGC
AGGCCAAGGTTGAAAAGCCGGATTCATTTACTTCCAAGCATGAAGACGGA
TCCATAGAGCAATACCAGGAGCTTCTGCAGCACCGACAGCGTAAAACTTC
AAACAGTAGCAAGGGGGATAAAGCAAGCTTTCTAGACCAT
BO11866.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:30:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32176-RA | 1746 | CG32176-PA | 1..1743 | 80..1822 | 8715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:30:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32176-RA | 1928 | CG32176-RA | 8..1812 | 18..1822 | 9025 | 100 | Plus |
CG12229-RA | 1960 | CG12229-RA | 55..108 | 542..489 | 270 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:30:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17436513..17437543 | 543..1573 | 5155 | 100 | Plus |
3L | 28110227 | 3L | 17433875..17434137 | 18..280 | 1315 | 100 | Plus |
3L | 28110227 | 3L | 17437605..17437855 | 1572..1822 | 1255 | 100 | Plus |
3L | 28110227 | 3L | 17434187..17434333 | 279..425 | 735 | 100 | Plus |
3L | 28110227 | 3L | 17434392..17434456 | 424..488 | 325 | 100 | Plus |
3L | 28110227 | 3L | 17436324..17436377 | 489..542 | 270 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 15:30:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc4-element | 2791 | Doc4-element DOC4 2791bp | 774..850 | 210..289 | 122 | 66.7 | Plus |
BO11866.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:27 Download gff for
BO11866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32176-RA | 1..1746 | 80..1826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:29 Download gff for
BO11866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32176-RA | 4..1810 | 17..1824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:12 Download gff for
BO11866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32176-RA | 6..1812 | 17..1824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:27 Download gff for
BO11866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32176-RA | 1..1819 | 15..1835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:33 Download gff for
BO11866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32176-RA | 6..1812 | 17..1824 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:33 Download gff for
BO11866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17433873..17434137 | 17..280 | 99 | -> | Plus |
3L | 17434189..17434333 | 281..425 | 100 | -> | Plus |
3L | 17434394..17434456 | 426..488 | 100 | -> | Plus |
3L | 17436324..17436377 | 489..542 | 100 | -> | Plus |
3L | 17436513..17437543 | 543..1573 | 100 | -> | Plus |
3L | 17437607..17437855 | 1574..1824 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:12 Download gff for
BO11866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17426973..17427237 | 17..280 | 99 | -> | Plus |
arm_3L | 17427289..17427433 | 281..425 | 100 | -> | Plus |
arm_3L | 17427494..17427556 | 426..488 | 100 | -> | Plus |
arm_3L | 17429424..17429477 | 489..542 | 100 | -> | Plus |
arm_3L | 17429613..17430643 | 543..1573 | 100 | -> | Plus |
arm_3L | 17430707..17430955 | 1574..1824 | 99 | | Plus |
BO11866.pep Sequence
Translation from 16 to 1840
> BO11866.pep
MATLPERPKLLGFYFDNKLDKMSGLKAKKSSKGDQIPKPISIKKEKIEEE
RKLHPMSHYIDDRLELVKQIFGTLKPKTILNLAPEFLKKTPLDEIEELCL
EELLCLSTKRLKSIIENTKCPTDTESSEDSDVEHKEEHISLEEISSDSDI
GGQESRKTKKKLRSKKTNNGNENKESGGQMSVLELLELQARARAIRSQLA
MEPITKIEVKSDDDIDEVPVEKVQRKEKDKRSTKKTDSSKRKSQESARPT
SPSQPDSSSKEQEAPRKRIKIKRNYRRTSKSPEKEVKPPTSTTSSETLVA
SNDLNKLPRSKSRSASPDVIPIQTEPETLLISDSTDDEATKKKTTETTTT
KQVESDPPAPVVESEPEEGEVRDEPEEPAKVVDPANPDEPTESEAAAISK
ELESNKPEVSDTSDKLDKTGDKEPPSEEALPANPPAEPKKPSAAEPTALD
DEDQNDDVISIGGDLEMIEEMTKDDDSPWVSIKSEKKEKMQDPEELDNDV
ISLDTSEDERDKLQQADSESWRSRYMKSSKVSQVLAESRLGKRVRDKLKK
SKRTKVTAGEEQAKVEKPDSFTSKHEDGSIEQYQELLQHRQRKTSNSSKG
DKASFLDH
BO11866.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:27:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32176-PA | 581 | CG32176-PA | 1..581 | 22..602 | 2928 | 100 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 3851..4431 | 20..597 | 214 | 21.4 | Plus |
Strn-Mlck-PV | 7944 | CG44162-PV | 3890..4470 | 20..597 | 214 | 21.4 | Plus |
Strn-Mlck-PS | 8216 | CG44162-PS | 3851..4431 | 20..597 | 214 | 21.4 | Plus |
Strn-Mlck-PU | 8255 | CG44162-PU | 3890..4470 | 20..597 | 214 | 21.4 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 4566..5144 | 20..585 | 212 | 21.9 | Plus |
Strn-Mlck-PV | 7944 | CG44162-PV | 4605..5183 | 20..585 | 212 | 21.9 | Plus |
Strn-Mlck-PS | 8216 | CG44162-PS | 4566..5144 | 20..585 | 212 | 21.9 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 4241..4821 | 20..597 | 196 | 20.6 | Plus |
Strn-Mlck-PV | 7944 | CG44162-PV | 4280..4860 | 20..597 | 196 | 20.6 | Plus |
Strn-Mlck-PS | 8216 | CG44162-PS | 4241..4821 | 20..597 | 196 | 20.6 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 3426..3968 | 52..582 | 194 | 21.7 | Plus |
Strn-Mlck-PV | 7944 | CG44162-PV | 3465..4007 | 52..582 | 194 | 21.7 | Plus |
Strn-Mlck-PS | 8216 | CG44162-PS | 3426..3968 | 52..582 | 194 | 21.7 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 4761..5247 | 20..499 | 161 | 19.5 | Plus |
Strn-Mlck-PV | 7944 | CG44162-PV | 4800..5286 | 20..499 | 161 | 19.5 | Plus |
Strn-Mlck-PS | 8216 | CG44162-PS | 4761..5247 | 20..499 | 161 | 19.5 | Plus |
Strn-Mlck-PT | 7905 | CG44162-PT | 2734..3248 | 38..539 | 159 | 22.2 | Plus |
Strn-Mlck-PV | 7944 | CG44162-PV | 2773..3287 | 38..539 | 159 | 22.2 | Plus |
Strn-Mlck-PS | 8216 | CG44162-PS | 2734..3248 | 38..539 | 159 | 22.2 | Plus |