Clone BO11868 Report

Search the DGRC for BO11868

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:118
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG18417-RA
Protein status:BO11868.pep: validated full length
Sequenced Size:1315

Clone Sequence Records

BO11868.3prime Sequence

828 bp (811 high quality bases) assembled on 2006-04-19

> BO11868.3prime
ATGGTCTAGAAAGCTTGCTGCAAGCGGATACTTTTGTATTACTTTCCGGG
CCATGGCCGCAATGCCCACCCAGGTCTCCTTGACTATGCTATCTATATCC
GATGCCGGAGGATCGAATCCTGTACCACCGAAGGGCAGTTCCATGGTGAA
TGATATGGGGAAGCCAGCATTGAAGGCATAATCATCGCTAGCTCCGGATG
CCGCATAATTAATGGTTGTGGCAGAGGGTCCAATCTTATAGATAGTGCCA
GTGGCCTCCTGAATGGCACTTTGACCTGCTGCAGCAACCTCATGCAGATC
CTCTTCTGTGTCGGGAACAGCTGCCGTCCAACCCCAAGGATACAGAATAA
GTGATCCATACGAATGCAAAGTCAAATACATCTGTCCGCGGTCCACATAG
CTATGGATGAGATCCCCAACGACCAGAGCCTCTGGTTCTGAAAAAGGCTT
TGCACCAGCATATATGTTATCACAGGGATCATCCGAGGCACCCTCCTCGT
TCCAGTGGAAGTCAAAGTTACGGTTGGGATCGGTGCCAATGCAATCCGAA
CTGCTGGGTTTCCTGGTTTTGCGCCACATGCGAGTATCCTCCGATAACTG
GGTGTACTCATAGCCATCGGGATTGACCACAGGGAGGATCACCCAATCGA
AGTCCAGCAGAAGATCCGCATTATCTTCGAGATTATACACCAGCTGGTTA
ATCAGATAAGTAGCAGCTGCCGGTGAGATCCATTCTCGTGCATGGAAGCC
ACCATCTACGAGGATCACATTCTTATTGCGCCTGGCATCGCCATTGGTGA
TTGTGATGGTTTTCAGCCAGCGACCTTC

BO11868.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG18417-PA 1284 CG18417-RA 472..1281 828..19 4050 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG18417-RA 1480 CG18417-RA 497..1306 828..19 4050 100 Minus
CG8562-RA 1483 CG8562-RA 495..746 816..565 335 77 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7400621..7401126 828..323 2530 100 Minus
3L 28110227 3L 7401194..7401497 322..19 1520 100 Minus
3L 28110227 3L 7398864..7399082 816..598 300 75.8 Minus
Blast to na_te.dros performed on 2015-02-10 18:56:22 has no hits.

BO11868.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:08 Download gff for BO11868.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18417-PA 472..1284 15..828 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:47:53 Download gff for BO11868.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18417-PA 472..1284 15..828 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 12:54:30 Download gff for BO11868.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18417-RA 497..1309 15..828 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:16:35 Download gff for BO11868.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18417-RA 497..1309 15..828 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:16:35 Download gff for BO11868.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7400621..7401126 323..828 100 -> Minus
3L 7401194..7401500 15..322 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 12:54:30 Download gff for BO11868.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7393721..7394226 323..828 100 -> Minus
arm_3L 7394294..7394600 15..322 99   Minus

BO11868.5prime Sequence

873 bp (821 high quality bases) assembled on 2006-04-19

> BO11868.5prime
GAAGTTATCAGTCGACATGACAGTTGTTTGGGTCATTCTGGCACTAAGCT
GCCTGAGCTTGTCAGCTGGACTGCAGAGAACCAATAAATACGAAGGTTAT
AAAATCTATGAGGTCTCTAGTGAAGCGCGTTCTGTAGCCTTTTCAGAAGC
TCTGTCCGAACTGGTCAAGAATGCGTCATATTATGAGGTGTTCTCGGAAT
TGAATGCTGGTAATCCAGGCAAGATTATGGTGCATCCTCACGAACAGGTG
AACTTTGTGCAGCTGATGGAGGAGAATAATGTGAAGTATGATATTATCAA
CCGAAATGTGGGTCTTACTCTGAGCCGTCAATTCGAAACGAACCGGATGT
TACGACATTGGTTTCCCTACAATGGAAGATTGGGCACTGAGAGATACTAC
AACCATGAGGAGATCAACCAGTTCATTGAGGATTTGGCTGGGGAACATCC
GCGTAGGGTTTTCCTAAAAACCGTAGGCAGAAGTTACGAAGGTCGCTGGC
TGAAAACCATCACAATCACCAATGGCGATGCCAGGCGCAATAAGAATGTG
ATCCTCGTAGATGGTGGCTTCCATGCACGAGAATGGATCTCACCGGCAGC
TGCTACTTATCTGATTAACCAGCTGGTGTATAATCTCGAAGATAATGCGG
ATCTTCTGCTGGACTTCGATTGGGTGATCCTCCCTGTGGTCAATCCCGAT
GGCTATGAGTACACCCAGTTATCGGAGGATACTCGCATGTGGCGCAAAAC
CAGGAAACCCAGCAGTTCGGATTGCATTGGCACCGATCCCAACCGTAACT
TTGACTTCCACTGGAACGAGGAGGGTGCCTCGGATGATCCCTGTGATAAC
ATATATGCTGGTGCAAAGCCTTT

BO11868.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG18417-PA 1284 CG18417-RA 1..857 17..873 4285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:14:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG18417-RA 1480 CG18417-RA 26..882 17..873 4285 100 Plus
CG8562-RA 1483 CG8562-RA 495..746 500..751 335 77 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:14:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7400229..7401006 96..873 3890 100 Plus
3L 28110227 3L 7400095..7400182 17..104 425 98.9 Plus
3L 28110227 3L 7398864..7399082 500..718 300 75.8 Plus
Blast to na_te.dros performed on 2015-02-12 05:14:44 has no hits.

BO11868.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:09 Download gff for BO11868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18417-PA 1..857 17..873 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:47:54 Download gff for BO11868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18417-PA 1..857 17..873 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:57:08 Download gff for BO11868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18417-RA 26..882 17..873 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:37:05 Download gff for BO11868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18417-RA 26..882 17..873 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:37:05 Download gff for BO11868.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7400095..7400174 17..96 100 -> Plus
3L 7400230..7401006 97..873 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:57:08 Download gff for BO11868.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7393195..7393274 17..96 100 -> Plus
arm_3L 7393330..7394106 97..873 100   Plus

BO11868.complete Sequence

1315 bp assembled on 2006-10-11

GenBank Submission: FJ632225

> BO11868.complete
GAAGTTATCAGTCGACATGACAGTTGTTTGGGTCATTCTGGCACTAAGCT
GCCTGAGCTTGTCAGCTGGACTGCAGAGAACCAATAAATACGAAGGTTAT
AAAATCTATGAGGTCTCTAGTGAAGCGCGTTCTGTAGCCTTTTCAGAAGC
TCTGTCCGAACTGGTCAAGAATGCGTCATATTATGAGGTGTTCTCGGAAT
TGAATGCTGGTAATCCAGGCAAGATTATGGTGCATCCTCACGAACAGGTG
AACTTTGTGCAGCTGATGGAGGAGAATAATGTGAAGTATGATATTATCAA
CCGAAATGTGGGTCTTACTCTGAGCCGTCAATTCGAAACGAACCGGATGT
TACGACATTGGTTTCCCTACAATGGAAGATTGGGCACTGAGAGATACTAC
AACCATGAGGAGATCAACCAGTTCATTGAGGATTTGGCTGGGGAACATCC
GCGTAGGGTTTTCCTAAAAACCGTAGGCAGAAGTTACGAAGGTCGCTGGC
TGAAAACCATCACAATCACCAATGGCGATGCCAGGCGCAATAAGAATGTG
ATCCTCGTAGATGGTGGCTTCCATGCACGAGAATGGATCTCACCGGCAGC
TGCTACTTATCTGATTAACCAGCTGGTGTATAATCTCGAAGATAATGCGG
ATCTTCTGCTGGACTTCGATTGGGTGATCCTCCCTGTGGTCAATCCCGAT
GGCTATGAGTACACCCAGTTATCGGAGGATACTCGCATGTGGCGCAAAAC
CAGGAAACCCAGCAGTTCGGATTGCATTGGCACCGATCCCAACCGTAACT
TTGACTTCCACTGGAACGAGGAGGGTGCCTCGGATGATCCCTGTGATAAC
ATATATGCTGGTGCAAAGCCTTTTTCAGAACCAGAGGCTCTGGTCGTTGG
GGATCTCATCCATAGCTATGTGGACCGCGGACAGATGTATTTGACTTTGC
ATTCGTATGGATCACTTATTCTGTATCCTTGGGGTTGGACGGCAGCTGTT
CCCGACACAGAAGAGGATCTGCATGAGGTTGCTGCAGCAGGTCAAAGTGC
CATTCAGGAGGCCACTGGCACTATCTATAAGATTGGACCCTCTGCCACAA
CCATTAATTATGCGGCATCCGGAGCTAGCGATGATTATGCCTTCAATGCT
GGCTTCCCCATATCATTCACCATGGAACTGCCCTTCGGTGGTACAGGATT
CGATCCTCCGGCATCGGATATAGATAGCATAGTCAAGGAGACCTGGGTGG
GCATTGCGGCCATGGCCCGGAAAGTAATACAAAAGTATCCGCTTGCAGCA
AGCTTTCTAGACCAT

BO11868.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:13:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG18417-RA 1284 CG18417-PA 1..1281 17..1297 6405 100 Plus
CG8562-RA 1275 CG8562-PA 475..693 500..718 300 75.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:13:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG18417-RA 1480 CG18417-RA 26..1306 17..1297 6405 100 Plus
CG8562-RA 1483 CG8562-RA 495..713 500..718 300 75.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:13:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7400229..7401126 96..993 4490 100 Plus
3L 28110227 3L 7401194..7401497 994..1297 1520 100 Plus
3L 28110227 3L 7400095..7400182 17..104 425 98.9 Plus
3L 28110227 3L 7398864..7399082 500..718 300 75.8 Plus
Blast to na_te.dros performed on 2014-11-27 08:13:07 has no hits.

BO11868.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:22 Download gff for BO11868.complete
Subject Subject Range Query Range Percent Splice Strand
CG18417-RA 1..1284 17..1301 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:20 Download gff for BO11868.complete
Subject Subject Range Query Range Percent Splice Strand
CG18417-RA 19..1302 17..1301 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:52 Download gff for BO11868.complete
Subject Subject Range Query Range Percent Splice Strand
CG18417-RA 26..1306 17..1299 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:22 Download gff for BO11868.complete
Subject Subject Range Query Range Percent Splice Strand
CG18417-RA 19..1302 17..1301 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:22 Download gff for BO11868.complete
Subject Subject Range Query Range Percent Splice Strand
CG18417-RA 26..1306 17..1299 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:22 Download gff for BO11868.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7401194..7401497 994..1299 99   Plus
3L 7400095..7400174 17..96 100 -> Plus
3L 7400230..7401126 97..993 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:52 Download gff for BO11868.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7393195..7393274 17..96 100 -> Plus
arm_3L 7393330..7394226 97..993 100 -> Plus
arm_3L 7394294..7394597 994..1299 99   Plus

BO11868.pep Sequence

Translation from 16 to 1315

> BO11868.pep
MTVVWVILALSCLSLSAGLQRTNKYEGYKIYEVSSEARSVAFSEALSELV
KNASYYEVFSELNAGNPGKIMVHPHEQVNFVQLMEENNVKYDIINRNVGL
TLSRQFETNRMLRHWFPYNGRLGTERYYNHEEINQFIEDLAGEHPRRVFL
KTVGRSYEGRWLKTITITNGDARRNKNVILVDGGFHAREWISPAAATYLI
NQLVYNLEDNADLLLDFDWVILPVVNPDGYEYTQLSEDTRMWRKTRKPSS
SDCIGTDPNRNFDFHWNEEGASDDPCDNIYAGAKPFSEPEALVVGDLIHS
YVDRGQMYLTLHSYGSLILYPWGWTAAVPDTEEDLHEVAAAGQSAIQEAT
GTIYKIGPSATTINYAASGASDDYAFNAGFPISFTMELPFGGTGFDPPAS
DIDSIVKETWVGIAAMARKVIQKYPLAASFLDH

BO11868.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG18417-PA 427 CG18417-PA 1..427 1..427 2268 100 Plus
CG8562-PA 424 CG8562-PA 5..424 8..424 1129 54.1 Plus
CG8560-PB 418 CG8560-PB 7..418 6..424 1032 49.3 Plus
CG8560-PA 418 CG8560-PA 7..418 6..424 1032 49.3 Plus
CG32379-PB 344 CG32379-PB 44..343 127..425 787 51.8 Plus