Clone Sequence Records
BO11868.3prime Sequence
828 bp (811 high quality bases) assembled on 2006-04-19
> BO11868.3prime
ATGGTCTAGAAAGCTTGCTGCAAGCGGATACTTTTGTATTACTTTCCGGG
CCATGGCCGCAATGCCCACCCAGGTCTCCTTGACTATGCTATCTATATCC
GATGCCGGAGGATCGAATCCTGTACCACCGAAGGGCAGTTCCATGGTGAA
TGATATGGGGAAGCCAGCATTGAAGGCATAATCATCGCTAGCTCCGGATG
CCGCATAATTAATGGTTGTGGCAGAGGGTCCAATCTTATAGATAGTGCCA
GTGGCCTCCTGAATGGCACTTTGACCTGCTGCAGCAACCTCATGCAGATC
CTCTTCTGTGTCGGGAACAGCTGCCGTCCAACCCCAAGGATACAGAATAA
GTGATCCATACGAATGCAAAGTCAAATACATCTGTCCGCGGTCCACATAG
CTATGGATGAGATCCCCAACGACCAGAGCCTCTGGTTCTGAAAAAGGCTT
TGCACCAGCATATATGTTATCACAGGGATCATCCGAGGCACCCTCCTCGT
TCCAGTGGAAGTCAAAGTTACGGTTGGGATCGGTGCCAATGCAATCCGAA
CTGCTGGGTTTCCTGGTTTTGCGCCACATGCGAGTATCCTCCGATAACTG
GGTGTACTCATAGCCATCGGGATTGACCACAGGGAGGATCACCCAATCGA
AGTCCAGCAGAAGATCCGCATTATCTTCGAGATTATACACCAGCTGGTTA
ATCAGATAAGTAGCAGCTGCCGGTGAGATCCATTCTCGTGCATGGAAGCC
ACCATCTACGAGGATCACATTCTTATTGCGCCTGGCATCGCCATTGGTGA
TTGTGATGGTTTTCAGCCAGCGACCTTC
BO11868.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18417-PA | 1284 | CG18417-RA | 472..1281 | 828..19 | 4050 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18417-RA | 1480 | CG18417-RA | 497..1306 | 828..19 | 4050 | 100 | Minus |
CG8562-RA | 1483 | CG8562-RA | 495..746 | 816..565 | 335 | 77 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7400621..7401126 | 828..323 | 2530 | 100 | Minus |
3L | 28110227 | 3L | 7401194..7401497 | 322..19 | 1520 | 100 | Minus |
3L | 28110227 | 3L | 7398864..7399082 | 816..598 | 300 | 75.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:56:22 has no hits.
BO11868.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:08 Download gff for
BO11868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18417-PA | 472..1284 | 15..828 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:47:53 Download gff for
BO11868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18417-PA | 472..1284 | 15..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 12:54:30 Download gff for
BO11868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18417-RA | 497..1309 | 15..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:16:35 Download gff for
BO11868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18417-RA | 497..1309 | 15..828 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:16:35 Download gff for
BO11868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7400621..7401126 | 323..828 | 100 | -> | Minus |
3L | 7401194..7401500 | 15..322 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 12:54:30 Download gff for
BO11868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7393721..7394226 | 323..828 | 100 | -> | Minus |
arm_3L | 7394294..7394600 | 15..322 | 99 | | Minus |
BO11868.5prime Sequence
873 bp (821 high quality bases) assembled on 2006-04-19
> BO11868.5prime
GAAGTTATCAGTCGACATGACAGTTGTTTGGGTCATTCTGGCACTAAGCT
GCCTGAGCTTGTCAGCTGGACTGCAGAGAACCAATAAATACGAAGGTTAT
AAAATCTATGAGGTCTCTAGTGAAGCGCGTTCTGTAGCCTTTTCAGAAGC
TCTGTCCGAACTGGTCAAGAATGCGTCATATTATGAGGTGTTCTCGGAAT
TGAATGCTGGTAATCCAGGCAAGATTATGGTGCATCCTCACGAACAGGTG
AACTTTGTGCAGCTGATGGAGGAGAATAATGTGAAGTATGATATTATCAA
CCGAAATGTGGGTCTTACTCTGAGCCGTCAATTCGAAACGAACCGGATGT
TACGACATTGGTTTCCCTACAATGGAAGATTGGGCACTGAGAGATACTAC
AACCATGAGGAGATCAACCAGTTCATTGAGGATTTGGCTGGGGAACATCC
GCGTAGGGTTTTCCTAAAAACCGTAGGCAGAAGTTACGAAGGTCGCTGGC
TGAAAACCATCACAATCACCAATGGCGATGCCAGGCGCAATAAGAATGTG
ATCCTCGTAGATGGTGGCTTCCATGCACGAGAATGGATCTCACCGGCAGC
TGCTACTTATCTGATTAACCAGCTGGTGTATAATCTCGAAGATAATGCGG
ATCTTCTGCTGGACTTCGATTGGGTGATCCTCCCTGTGGTCAATCCCGAT
GGCTATGAGTACACCCAGTTATCGGAGGATACTCGCATGTGGCGCAAAAC
CAGGAAACCCAGCAGTTCGGATTGCATTGGCACCGATCCCAACCGTAACT
TTGACTTCCACTGGAACGAGGAGGGTGCCTCGGATGATCCCTGTGATAAC
ATATATGCTGGTGCAAAGCCTTT
BO11868.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18417-PA | 1284 | CG18417-RA | 1..857 | 17..873 | 4285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:14:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18417-RA | 1480 | CG18417-RA | 26..882 | 17..873 | 4285 | 100 | Plus |
CG8562-RA | 1483 | CG8562-RA | 495..746 | 500..751 | 335 | 77 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:14:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7400229..7401006 | 96..873 | 3890 | 100 | Plus |
3L | 28110227 | 3L | 7400095..7400182 | 17..104 | 425 | 98.9 | Plus |
3L | 28110227 | 3L | 7398864..7399082 | 500..718 | 300 | 75.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:14:44 has no hits.
BO11868.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:09 Download gff for
BO11868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18417-PA | 1..857 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:47:54 Download gff for
BO11868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18417-PA | 1..857 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:57:08 Download gff for
BO11868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18417-RA | 26..882 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:37:05 Download gff for
BO11868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18417-RA | 26..882 | 17..873 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:37:05 Download gff for
BO11868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7400095..7400174 | 17..96 | 100 | -> | Plus |
3L | 7400230..7401006 | 97..873 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:57:08 Download gff for
BO11868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7393195..7393274 | 17..96 | 100 | -> | Plus |
arm_3L | 7393330..7394106 | 97..873 | 100 | | Plus |
BO11868.complete Sequence
1315 bp assembled on 2006-10-11
GenBank Submission: FJ632225
> BO11868.complete
GAAGTTATCAGTCGACATGACAGTTGTTTGGGTCATTCTGGCACTAAGCT
GCCTGAGCTTGTCAGCTGGACTGCAGAGAACCAATAAATACGAAGGTTAT
AAAATCTATGAGGTCTCTAGTGAAGCGCGTTCTGTAGCCTTTTCAGAAGC
TCTGTCCGAACTGGTCAAGAATGCGTCATATTATGAGGTGTTCTCGGAAT
TGAATGCTGGTAATCCAGGCAAGATTATGGTGCATCCTCACGAACAGGTG
AACTTTGTGCAGCTGATGGAGGAGAATAATGTGAAGTATGATATTATCAA
CCGAAATGTGGGTCTTACTCTGAGCCGTCAATTCGAAACGAACCGGATGT
TACGACATTGGTTTCCCTACAATGGAAGATTGGGCACTGAGAGATACTAC
AACCATGAGGAGATCAACCAGTTCATTGAGGATTTGGCTGGGGAACATCC
GCGTAGGGTTTTCCTAAAAACCGTAGGCAGAAGTTACGAAGGTCGCTGGC
TGAAAACCATCACAATCACCAATGGCGATGCCAGGCGCAATAAGAATGTG
ATCCTCGTAGATGGTGGCTTCCATGCACGAGAATGGATCTCACCGGCAGC
TGCTACTTATCTGATTAACCAGCTGGTGTATAATCTCGAAGATAATGCGG
ATCTTCTGCTGGACTTCGATTGGGTGATCCTCCCTGTGGTCAATCCCGAT
GGCTATGAGTACACCCAGTTATCGGAGGATACTCGCATGTGGCGCAAAAC
CAGGAAACCCAGCAGTTCGGATTGCATTGGCACCGATCCCAACCGTAACT
TTGACTTCCACTGGAACGAGGAGGGTGCCTCGGATGATCCCTGTGATAAC
ATATATGCTGGTGCAAAGCCTTTTTCAGAACCAGAGGCTCTGGTCGTTGG
GGATCTCATCCATAGCTATGTGGACCGCGGACAGATGTATTTGACTTTGC
ATTCGTATGGATCACTTATTCTGTATCCTTGGGGTTGGACGGCAGCTGTT
CCCGACACAGAAGAGGATCTGCATGAGGTTGCTGCAGCAGGTCAAAGTGC
CATTCAGGAGGCCACTGGCACTATCTATAAGATTGGACCCTCTGCCACAA
CCATTAATTATGCGGCATCCGGAGCTAGCGATGATTATGCCTTCAATGCT
GGCTTCCCCATATCATTCACCATGGAACTGCCCTTCGGTGGTACAGGATT
CGATCCTCCGGCATCGGATATAGATAGCATAGTCAAGGAGACCTGGGTGG
GCATTGCGGCCATGGCCCGGAAAGTAATACAAAAGTATCCGCTTGCAGCA
AGCTTTCTAGACCAT
BO11868.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:13:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18417-RA | 1284 | CG18417-PA | 1..1281 | 17..1297 | 6405 | 100 | Plus |
CG8562-RA | 1275 | CG8562-PA | 475..693 | 500..718 | 300 | 75.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:13:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18417-RA | 1480 | CG18417-RA | 26..1306 | 17..1297 | 6405 | 100 | Plus |
CG8562-RA | 1483 | CG8562-RA | 495..713 | 500..718 | 300 | 75.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:13:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7400229..7401126 | 96..993 | 4490 | 100 | Plus |
3L | 28110227 | 3L | 7401194..7401497 | 994..1297 | 1520 | 100 | Plus |
3L | 28110227 | 3L | 7400095..7400182 | 17..104 | 425 | 98.9 | Plus |
3L | 28110227 | 3L | 7398864..7399082 | 500..718 | 300 | 75.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:13:07 has no hits.
BO11868.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:22 Download gff for
BO11868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18417-RA | 1..1284 | 17..1301 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:20 Download gff for
BO11868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18417-RA | 19..1302 | 17..1301 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:52 Download gff for
BO11868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18417-RA | 26..1306 | 17..1299 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:22 Download gff for
BO11868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18417-RA | 19..1302 | 17..1301 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:22 Download gff for
BO11868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18417-RA | 26..1306 | 17..1299 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:22 Download gff for
BO11868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7401194..7401497 | 994..1299 | 99 | | Plus |
3L | 7400095..7400174 | 17..96 | 100 | -> | Plus |
3L | 7400230..7401126 | 97..993 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:52 Download gff for
BO11868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7393195..7393274 | 17..96 | 100 | -> | Plus |
arm_3L | 7393330..7394226 | 97..993 | 100 | -> | Plus |
arm_3L | 7394294..7394597 | 994..1299 | 99 | | Plus |
BO11868.pep Sequence
Translation from 16 to 1315
> BO11868.pep
MTVVWVILALSCLSLSAGLQRTNKYEGYKIYEVSSEARSVAFSEALSELV
KNASYYEVFSELNAGNPGKIMVHPHEQVNFVQLMEENNVKYDIINRNVGL
TLSRQFETNRMLRHWFPYNGRLGTERYYNHEEINQFIEDLAGEHPRRVFL
KTVGRSYEGRWLKTITITNGDARRNKNVILVDGGFHAREWISPAAATYLI
NQLVYNLEDNADLLLDFDWVILPVVNPDGYEYTQLSEDTRMWRKTRKPSS
SDCIGTDPNRNFDFHWNEEGASDDPCDNIYAGAKPFSEPEALVVGDLIHS
YVDRGQMYLTLHSYGSLILYPWGWTAAVPDTEEDLHEVAAAGQSAIQEAT
GTIYKIGPSATTINYAASGASDDYAFNAGFPISFTMELPFGGTGFDPPAS
DIDSIVKETWVGIAAMARKVIQKYPLAASFLDH
BO11868.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18417-PA | 427 | CG18417-PA | 1..427 | 1..427 | 2268 | 100 | Plus |
CG8562-PA | 424 | CG8562-PA | 5..424 | 8..424 | 1129 | 54.1 | Plus |
CG8560-PB | 418 | CG8560-PB | 7..418 | 6..424 | 1032 | 49.3 | Plus |
CG8560-PA | 418 | CG8560-PA | 7..418 | 6..424 | 1032 | 49.3 | Plus |
CG32379-PB | 344 | CG32379-PB | 44..343 | 127..425 | 787 | 51.8 | Plus |