Clone Sequence Records
BO11869.3prime Sequence
864 bp (800 high quality bases) assembled on 2006-04-19
> BO11869.3prime
ATGGTCTAGAAAGCTTGCTTCATCCAAAACGGAATCCAGCCATTCCTCCA
CACCGTTTTTGCTTGCTGCCGATGAGGGTGTGGCCGGCTGCACCATAGGC
ATTGGCATCGTAATGGTTCCAGAGCCTATATCCAGTTGCGTATCGGTCAT
GGCCAATAGCTCGTCAAGTTCATCAGGTTCAGCTGCTGAGGCAGCAATTG
GTTTTTCCGCCGCTGCAGGGGCAACGTCCTTATTGGACTTAGCAGAGGGA
GCTCGCGACTTGGCGCCCCCATTGGCGTCCTTCAGAATGCACTGCTGGTA
AACTGCCTCAGCCCGTTCGGCGGCCTTCTCTTGGGCGGCAATCTGAGCGC
GGGTGAACAAAGACGCCGGATAATCCATACGCTTGTATAACGGAATCGTT
TGCAGACCCACATTTAGGCGGGTGAGGTTCAGGGTGAAGTAAGCACTGGC
AGCCTTGGTGTGTAGCTTGGTCTGGCCCTCGGCCACGTTGGCCCATTCGC
GCTCTGACCCAAAGGTGAAGTGGCCGCCACCGAGGCTGGGAAACTGGGCC
AGCTGCTGGAAATCGCCAGCTCGTAACTGGGCACGGGCATTCTCATCGAT
GGGTGCACCATCCAGGCCCAATTGCTCCACATCGTCGGTGTCGCTGGGCA
GGGTGTCCAGCATGTCCCTGTTCCGTTGCGGTGCCAACGATGAGCGGCCT
GCTCCACTGGACTGCCAATTGCCACGCCTGGCCAACCTTGGCTCATCGCT
CGAGTCCGCCACATCAACCATGCTGCGACGGGAGGTGGGTGGTGGCGATC
CCGACGATGTGGTGGAGCGCCCTTGATCCTTTTTATGGTGATGATTGTAC
TGCTTCATGTTCCT
BO11869.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15727-PA | 885 | CG15727-RA | 37..882 | 864..19 | 4230 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:59:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aven-RB | 1207 | CG15727-RB | 174..1019 | 864..19 | 4230 | 100 | Minus |
Aven-RA | 1165 | CG15727-RA | 132..977 | 864..19 | 4230 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:59:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12628558..12629403 | 19..864 | 4230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:59:25 has no hits.
BO11869.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:10 Download gff for
BO11869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15727-PA | 37..885 | 18..864 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:47:55 Download gff for
BO11869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15727-PA | 37..885 | 18..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:24:08 Download gff for
BO11869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aven-RA | 132..982 | 11..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:35:27 Download gff for
BO11869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aven-RA | 132..982 | 11..864 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:35:27 Download gff for
BO11869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12628553..12629403 | 11..864 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:24:08 Download gff for
BO11869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12522586..12523436 | 11..864 | 99 | | Plus |
BO11869.5prime Sequence
878 bp (777 high quality bases) assembled on 2006-04-19
> BO11869.5prime
GAAGTTATCAGTCGACATGTCCGGCAAGGACGATCGATCCAAGGAAAAGC
GCAGGAACATGAAGCAGTACAATCATCACCATAAAAAGGATCAAGGGCGC
TCCACCACATCGTCGGGATCGCCACCACCCACCTCCCGTCGCAGCATGGT
TGATGTGGCGGACTCGAGCGATGAGCCAAGGTTGGCCAGGCGTGGCAATT
GGCAGTCCAGTGGAGCAGGCCGCTCATCGTTGGCACCGCAACGGAACAGG
GACATGCTGGACACCCTGCCCAGCGACACCGACGATGTGGAGCAATTGGG
CCTGGATGGTGCACCCATCGATGAGAATGCCCGTGCCCAGTTACGAGCTG
GCGATTTCCAGCAGCTGGCCCAGTTTCCCAGCCTCGGTGGCGGCCACTTC
ACCTTTGGGTCAGAGCGCGAATGGGCCAACGTGGCCGAGGGCCAGACCAA
GCTACACACCAAGGCTGCCAGTGCTTACTTCACCCTGAACCTCACCCGCC
TAAATGTGGGTCTGCAAACGATTCCGTTATACAAGCGTATGGATTATCCG
GCGTCTTTGTTCACCCGCGCTCAGATTGCCGCCCAAGAGAAGGCCGCCGA
ACGGGCTGAGGCAGTTTACCAGCAGTGCATTCTGAAGGACGCCAATGGGG
GCGCCAAGTCGCGAGCTCCCTCTGCTAAGTCCAATAAGGACGTTGCCCCT
GCAGCGGCGGAAAAACCAATTGCTGCCTCAGCAGCTGAACCTGATGAACT
TGACGAGCTATTGGCCATGACCGATACGCAACTGGATATAGGCTCTGGAA
CCATTACGATGCCAATGCCTATGGTGCAGCCGGCCACACCCTCATCGGCA
GCAAGCAAAAACGGTGTGAAGGAATGGC
BO11869.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15727-PA | 885 | CG15727-RA | 1..862 | 17..878 | 4285 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:57:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aven-RB | 1207 | CG15727-RB | 138..999 | 17..878 | 4295 | 99.9 | Plus |
Aven-RA | 1165 | CG15727-RA | 96..957 | 17..878 | 4295 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:57:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12628578..12629410 | 878..46 | 4150 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:57:41 has no hits.
BO11869.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:11 Download gff for
BO11869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15727-PA | 1..862 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:47:57 Download gff for
BO11869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15727-PA | 1..862 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:40:22 Download gff for
BO11869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aven-RA | 89..957 | 9..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:31:56 Download gff for
BO11869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aven-RA | 89..957 | 9..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:31:56 Download gff for
BO11869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12628578..12629410 | 46..878 | 99 | <- | Minus |
X | 12629475..12629510 | 9..45 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:40:22 Download gff for
BO11869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12522611..12523443 | 46..878 | 99 | <- | Minus |
arm_X | 12523508..12523543 | 9..45 | 91 | | Minus |
BO11869.complete Sequence
916 bp assembled on 2006-10-11
GenBank Submission: FJ632226
> BO11869.complete
GAAGTTATCAGTCGACATGTCCGGCAAGGACGATCGATCCAAGGAAAAGC
GCAGGAACATGAAGCAGTACAATCATCACCATAAAAAGGATCAAGGGCGC
TCCACCACATCGTCGGGATCGCCACCACCCACCTCCCGTCGCAGCATGGT
TGATGTGGCGGACTCGAGCGATGAGCCAAGGTTGGCCAGGCGTGGCAATT
GGCAGTCCAGTGGAGCAGGCCGCTCATCGTTGGCACCGCAACGGAACAGG
GACATGCTGGACACCCTGCCCAGCGACACCGACGATGTGGAGCAATTGGG
CCTGGATGGTGCACCCATCGATGAGAATGCCCGTGCCCAGTTACGAGCTG
GCGATTTCCAGCAGCTGGCCCAGTTTCCCAGCCTCGGTGGCGGCCACTTC
ACCTTTGGGTCAGAGCGCGAATGGGCCAACGTGGCCGAGGGCCAGACCAA
GCTACACACCAAGGCTGCCAGTGCTTACTTCACCCTGAACCTCACCCGCC
TAAATGTGGGTCTGCAAACGATTCCGTTATACAAGCGTATGGATTATCCG
GCGTCTTTGTTCACCCGCGCTCAGATTGCCGCCCAAGAGAAGGCCGCCGA
ACGGGCTGAGGCAGTTTACCAGCAGTGCATTCTGAAGGACGCCAATGGGG
GCGCCAAGTCGCGAGCTCCCTCTGCTAAGTCCAATAAGGACGTTGCCCCT
GCAGCGGCGGAAAAACCAATTGCTGCCTCAGCAGCTGAACCTGATGAACT
TGACGAGCTATTGGCCATGACCGATACGCAACTGGATATAGGCTCTGGAA
CCATTACGATGCCAATGCCTATGGTGCAGCCGGCCACACCCTCATCGGCA
GCAAGCAAAAACGGTGTGGAGGAATGGCTGGATTCCGTTTTGGATGAAGC
AAGCTTTCTAGACCAT
BO11869.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:08:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aven-RB | 885 | CG15727-PB | 1..882 | 17..898 | 4410 | 100 | Plus |
Aven-RA | 885 | CG15727-PA | 1..882 | 17..898 | 4410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aven-RB | 1207 | CG15727-RB | 138..1019 | 17..898 | 4410 | 100 | Plus |
Aven-RA | 1165 | CG15727-RA | 96..977 | 17..898 | 4410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12628558..12629410 | 898..46 | 4265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:08:57 has no hits.
BO11869.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:05 Download gff for
BO11869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15727-RA | 1..885 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:30:23 Download gff for
BO11869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15727-RA | 89..982 | 9..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:00 Download gff for
BO11869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aven-RA | 96..977 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:06 Download gff for
BO11869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15727-RA | 89..982 | 9..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:54 Download gff for
BO11869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aven-RA | 96..977 | 17..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:54 Download gff for
BO11869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12628556..12629410 | 46..900 | 99 | <- | Minus |
X | 12629475..12629503 | 17..45 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:00 Download gff for
BO11869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12522589..12523443 | 46..900 | 99 | <- | Minus |
arm_X | 12523508..12523536 | 17..45 | 100 | | Minus |
BO11869.pep Sequence
Translation from 16 to 916
> BO11869.pep
MSGKDDRSKEKRRNMKQYNHHHKKDQGRSTTSSGSPPPTSRRSMVDVADS
SDEPRLARRGNWQSSGAGRSSLAPQRNRDMLDTLPSDTDDVEQLGLDGAP
IDENARAQLRAGDFQQLAQFPSLGGGHFTFGSEREWANVAEGQTKLHTKA
ASAYFTLNLTRLNVGLQTIPLYKRMDYPASLFTRAQIAAQEKAAERAEAV
YQQCILKDANGGAKSRAPSAKSNKDVAPAAAEKPIAASAAEPDELDELLA
MTDTQLDIGSGTITMPMPMVQPATPSSAASKNGVEEWLDSVLDEASFLDH
BO11869.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:31:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aven-PB | 294 | CG15727-PB | 1..294 | 1..294 | 1507 | 100 | Plus |
Aven-PA | 294 | CG15727-PA | 1..294 | 1..294 | 1507 | 100 | Plus |