Clone BO11869 Report

Search the DGRC for BO11869

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:118
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptCG15727-RA
Protein status:BO11869.pep: validated full length
Sequenced Size:916

Clone Sequence Records

BO11869.3prime Sequence

864 bp (800 high quality bases) assembled on 2006-04-19

> BO11869.3prime
ATGGTCTAGAAAGCTTGCTTCATCCAAAACGGAATCCAGCCATTCCTCCA
CACCGTTTTTGCTTGCTGCCGATGAGGGTGTGGCCGGCTGCACCATAGGC
ATTGGCATCGTAATGGTTCCAGAGCCTATATCCAGTTGCGTATCGGTCAT
GGCCAATAGCTCGTCAAGTTCATCAGGTTCAGCTGCTGAGGCAGCAATTG
GTTTTTCCGCCGCTGCAGGGGCAACGTCCTTATTGGACTTAGCAGAGGGA
GCTCGCGACTTGGCGCCCCCATTGGCGTCCTTCAGAATGCACTGCTGGTA
AACTGCCTCAGCCCGTTCGGCGGCCTTCTCTTGGGCGGCAATCTGAGCGC
GGGTGAACAAAGACGCCGGATAATCCATACGCTTGTATAACGGAATCGTT
TGCAGACCCACATTTAGGCGGGTGAGGTTCAGGGTGAAGTAAGCACTGGC
AGCCTTGGTGTGTAGCTTGGTCTGGCCCTCGGCCACGTTGGCCCATTCGC
GCTCTGACCCAAAGGTGAAGTGGCCGCCACCGAGGCTGGGAAACTGGGCC
AGCTGCTGGAAATCGCCAGCTCGTAACTGGGCACGGGCATTCTCATCGAT
GGGTGCACCATCCAGGCCCAATTGCTCCACATCGTCGGTGTCGCTGGGCA
GGGTGTCCAGCATGTCCCTGTTCCGTTGCGGTGCCAACGATGAGCGGCCT
GCTCCACTGGACTGCCAATTGCCACGCCTGGCCAACCTTGGCTCATCGCT
CGAGTCCGCCACATCAACCATGCTGCGACGGGAGGTGGGTGGTGGCGATC
CCGACGATGTGGTGGAGCGCCCTTGATCCTTTTTATGGTGATGATTGTAC
TGCTTCATGTTCCT

BO11869.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG15727-PA 885 CG15727-RA 37..882 864..19 4230 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
Aven-RB 1207 CG15727-RB 174..1019 864..19 4230 100 Minus
Aven-RA 1165 CG15727-RA 132..977 864..19 4230 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:59:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12628558..12629403 19..864 4230 100 Plus
Blast to na_te.dros performed on 2015-02-12 18:59:25 has no hits.

BO11869.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:10 Download gff for BO11869.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15727-PA 37..885 18..864 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:47:55 Download gff for BO11869.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15727-PA 37..885 18..864 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:24:08 Download gff for BO11869.3prime
Subject Subject Range Query Range Percent Splice Strand
Aven-RA 132..982 11..864 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:35:27 Download gff for BO11869.3prime
Subject Subject Range Query Range Percent Splice Strand
Aven-RA 132..982 11..864 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:35:27 Download gff for BO11869.3prime
Subject Subject Range Query Range Percent Splice Strand
X 12628553..12629403 11..864 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:24:08 Download gff for BO11869.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12522586..12523436 11..864 99   Plus

BO11869.5prime Sequence

878 bp (777 high quality bases) assembled on 2006-04-19

> BO11869.5prime
GAAGTTATCAGTCGACATGTCCGGCAAGGACGATCGATCCAAGGAAAAGC
GCAGGAACATGAAGCAGTACAATCATCACCATAAAAAGGATCAAGGGCGC
TCCACCACATCGTCGGGATCGCCACCACCCACCTCCCGTCGCAGCATGGT
TGATGTGGCGGACTCGAGCGATGAGCCAAGGTTGGCCAGGCGTGGCAATT
GGCAGTCCAGTGGAGCAGGCCGCTCATCGTTGGCACCGCAACGGAACAGG
GACATGCTGGACACCCTGCCCAGCGACACCGACGATGTGGAGCAATTGGG
CCTGGATGGTGCACCCATCGATGAGAATGCCCGTGCCCAGTTACGAGCTG
GCGATTTCCAGCAGCTGGCCCAGTTTCCCAGCCTCGGTGGCGGCCACTTC
ACCTTTGGGTCAGAGCGCGAATGGGCCAACGTGGCCGAGGGCCAGACCAA
GCTACACACCAAGGCTGCCAGTGCTTACTTCACCCTGAACCTCACCCGCC
TAAATGTGGGTCTGCAAACGATTCCGTTATACAAGCGTATGGATTATCCG
GCGTCTTTGTTCACCCGCGCTCAGATTGCCGCCCAAGAGAAGGCCGCCGA
ACGGGCTGAGGCAGTTTACCAGCAGTGCATTCTGAAGGACGCCAATGGGG
GCGCCAAGTCGCGAGCTCCCTCTGCTAAGTCCAATAAGGACGTTGCCCCT
GCAGCGGCGGAAAAACCAATTGCTGCCTCAGCAGCTGAACCTGATGAACT
TGACGAGCTATTGGCCATGACCGATACGCAACTGGATATAGGCTCTGGAA
CCATTACGATGCCAATGCCTATGGTGCAGCCGGCCACACCCTCATCGGCA
GCAAGCAAAAACGGTGTGAAGGAATGGC

BO11869.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG15727-PA 885 CG15727-RA 1..862 17..878 4285 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:57:43
Subject Length Description Subject Range Query Range Score Percent Strand
Aven-RB 1207 CG15727-RB 138..999 17..878 4295 99.9 Plus
Aven-RA 1165 CG15727-RA 96..957 17..878 4295 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12628578..12629410 878..46 4150 99.9 Minus
Blast to na_te.dros performed on 2015-02-11 10:57:41 has no hits.

BO11869.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:11 Download gff for BO11869.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15727-PA 1..862 17..878 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:47:57 Download gff for BO11869.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15727-PA 1..862 17..878 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:40:22 Download gff for BO11869.5prime
Subject Subject Range Query Range Percent Splice Strand
Aven-RA 89..957 9..878 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:31:56 Download gff for BO11869.5prime
Subject Subject Range Query Range Percent Splice Strand
Aven-RA 89..957 9..878 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:31:56 Download gff for BO11869.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12628578..12629410 46..878 99 <- Minus
X 12629475..12629510 9..45 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:40:22 Download gff for BO11869.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12522611..12523443 46..878 99 <- Minus
arm_X 12523508..12523543 9..45 91   Minus

BO11869.complete Sequence

916 bp assembled on 2006-10-11

GenBank Submission: FJ632226

> BO11869.complete
GAAGTTATCAGTCGACATGTCCGGCAAGGACGATCGATCCAAGGAAAAGC
GCAGGAACATGAAGCAGTACAATCATCACCATAAAAAGGATCAAGGGCGC
TCCACCACATCGTCGGGATCGCCACCACCCACCTCCCGTCGCAGCATGGT
TGATGTGGCGGACTCGAGCGATGAGCCAAGGTTGGCCAGGCGTGGCAATT
GGCAGTCCAGTGGAGCAGGCCGCTCATCGTTGGCACCGCAACGGAACAGG
GACATGCTGGACACCCTGCCCAGCGACACCGACGATGTGGAGCAATTGGG
CCTGGATGGTGCACCCATCGATGAGAATGCCCGTGCCCAGTTACGAGCTG
GCGATTTCCAGCAGCTGGCCCAGTTTCCCAGCCTCGGTGGCGGCCACTTC
ACCTTTGGGTCAGAGCGCGAATGGGCCAACGTGGCCGAGGGCCAGACCAA
GCTACACACCAAGGCTGCCAGTGCTTACTTCACCCTGAACCTCACCCGCC
TAAATGTGGGTCTGCAAACGATTCCGTTATACAAGCGTATGGATTATCCG
GCGTCTTTGTTCACCCGCGCTCAGATTGCCGCCCAAGAGAAGGCCGCCGA
ACGGGCTGAGGCAGTTTACCAGCAGTGCATTCTGAAGGACGCCAATGGGG
GCGCCAAGTCGCGAGCTCCCTCTGCTAAGTCCAATAAGGACGTTGCCCCT
GCAGCGGCGGAAAAACCAATTGCTGCCTCAGCAGCTGAACCTGATGAACT
TGACGAGCTATTGGCCATGACCGATACGCAACTGGATATAGGCTCTGGAA
CCATTACGATGCCAATGCCTATGGTGCAGCCGGCCACACCCTCATCGGCA
GCAAGCAAAAACGGTGTGGAGGAATGGCTGGATTCCGTTTTGGATGAAGC
AAGCTTTCTAGACCAT

BO11869.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
Aven-RB 885 CG15727-PB 1..882 17..898 4410 100 Plus
Aven-RA 885 CG15727-PA 1..882 17..898 4410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:59
Subject Length Description Subject Range Query Range Score Percent Strand
Aven-RB 1207 CG15727-RB 138..1019 17..898 4410 100 Plus
Aven-RA 1165 CG15727-RA 96..977 17..898 4410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12628558..12629410 898..46 4265 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:08:57 has no hits.

BO11869.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:05 Download gff for BO11869.complete
Subject Subject Range Query Range Percent Splice Strand
CG15727-RA 1..885 17..899 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:30:23 Download gff for BO11869.complete
Subject Subject Range Query Range Percent Splice Strand
CG15727-RA 89..982 9..906 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:00 Download gff for BO11869.complete
Subject Subject Range Query Range Percent Splice Strand
Aven-RA 96..977 17..900 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:06 Download gff for BO11869.complete
Subject Subject Range Query Range Percent Splice Strand
CG15727-RA 89..982 9..906 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:54 Download gff for BO11869.complete
Subject Subject Range Query Range Percent Splice Strand
Aven-RA 96..977 17..900 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:54 Download gff for BO11869.complete
Subject Subject Range Query Range Percent Splice Strand
X 12628556..12629410 46..900 99 <- Minus
X 12629475..12629503 17..45 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:00 Download gff for BO11869.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12522589..12523443 46..900 99 <- Minus
arm_X 12523508..12523536 17..45 100   Minus

BO11869.pep Sequence

Translation from 16 to 916

> BO11869.pep
MSGKDDRSKEKRRNMKQYNHHHKKDQGRSTTSSGSPPPTSRRSMVDVADS
SDEPRLARRGNWQSSGAGRSSLAPQRNRDMLDTLPSDTDDVEQLGLDGAP
IDENARAQLRAGDFQQLAQFPSLGGGHFTFGSEREWANVAEGQTKLHTKA
ASAYFTLNLTRLNVGLQTIPLYKRMDYPASLFTRAQIAAQEKAAERAEAV
YQQCILKDANGGAKSRAPSAKSNKDVAPAAAEKPIAASAAEPDELDELLA
MTDTQLDIGSGTITMPMPMVQPATPSSAASKNGVEEWLDSVLDEASFLDH

BO11869.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:31:31
Subject Length Description Subject Range Query Range Score Percent Strand
Aven-PB 294 CG15727-PB 1..294 1..294 1507 100 Plus
Aven-PA 294 CG15727-PA 1..294 1..294 1507 100 Plus