Clone BO11870 Report

Search the DGRC for BO11870

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:118
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG6726-RA
Protein status:BO11870.pep: validated full length
Sequenced Size:1237

Clone Sequence Records

BO11870.3prime Sequence

856 bp (787 high quality bases) assembled on 2006-04-19

> BO11870.3prime
ATGGTCTAGAAAGCTTGCAGCATCAGCTACGGCAGGAATGAGCTTCTTGT
AAACCTCAATGCCGTGCAAATAGGTATCGGCTTTCAGGAATTCATCGTGG
TCGTGCAGCAGGATGGGGGTGTTGTTAATGGGCGAGAATCCTAGAGCTGG
AATGCCTGCGTAGCGAATATAACGACTGTCCGTGGCGCCGGGGAAAACAC
GAACCCGTGTCTTGAGGCCAAGGTCATCGAGTGCTTTCTTAAAGGCCAGC
CAGTAGGCATTCGACGAGTCAATCTTTGTTGGCTCCACAAAGGGGTTTTT
CATCTCAAACTCCAGTTCAATGCCGCCGCCAGCCTCCTCGCACCAGTCGC
GAATCTGCTTCTCAAAGGCAGGGATATCCACGGTGACGGCAATGCGGATA
TCAAATACAGCTTCCAGCAATGGGGGAACCACGTTGCTCTGGACTCCGCC
CCTCAGTTGGGTGAGATTCACAGTGGTCACATCACCAATTTCGAGGGATG
AGTCGTCAGCTAGTTTTTGCACTTGCGATTTGCGGAACTCCATCATTTTG
CCTACCACATAGTTCAGCTTCTCGCCAGCAGTATTCGGGAGCAACAGTGA
TCCGTGACCAGCAGTTCCGCTGATCTTGAAACGAAGATGCCAAAGAGTCC
GTTCAGCGTAGTACAGAGCGTAGGTTTCATCCGCACTAGAGATTCCCTCG
TCGAAACTGAATCCCACATTGAGCTTCTTGAAGTAGTCGCTCTTTACCAG
CTCCCGCATGCCCAGGTGGCCGCCAACCTCCTCGTCCGGAACATAATTGA
GATAGATCGTCCTCTTGGGTTGATAGCCACTGGCCTTGAGGGCACGCACA
GCTCCC

BO11870.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6726-PB 1206 CG6726-RB 366..1203 856..19 4165 99.8 Minus
CG6726-PA 1206 CG6726-RA 366..1203 856..19 4165 99.8 Minus
CG6733-PA 1206 CG6733-RA 852..906 370..316 150 90.9 Minus
CG6738-PA 1206 CG6738-RA 739..797 483..425 145 89.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:04:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG17110-RC 2911 CG17110-RC 407..1244 856..19 4175 99.9 Minus
CG6726-RC 2911 CG6726-RC 407..1244 856..19 4175 99.9 Minus
CG6726-RA 1473 CG6726-RA 460..1297 856..19 4175 99.9 Minus
CG17110-RC 2911 CG17110-RC 1954..2759 846..38 515 71.8 Minus
CG6726-RC 2911 CG6726-RC 1954..2759 846..38 515 71.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:04:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23092601..23093018 638..221 2090 100 Minus
3R 32079331 3R 23092330..23092547 856..639 1075 99.5 Minus
3R 32079331 3R 23093082..23093283 220..19 1010 100 Minus
3R 32079331 3R 23098473..23098780 623..316 445 76.3 Minus
3R 32079331 3R 23096447..23096750 623..320 365 74.7 Minus
3R 32079331 3R 10676275..10676370 536..631 240 83.3 Plus
3R 32079331 3R 23100419..23100585 483..317 235 76 Minus
3R 32079331 3R 23094532..23094678 486..340 225 76.9 Minus
3R 32079331 3R 23094917..23095032 153..38 220 79.3 Minus
Blast to na_te.dros performed on 2015-02-12 19:04:41 has no hits.

BO11870.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:12 Download gff for BO11870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6726-PB 366..1206 18..856 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:47:58 Download gff for BO11870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6726-PA 366..1206 18..856 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:25:14 Download gff for BO11870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6726-RB 407..1248 13..856 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:28:48 Download gff for BO11870.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6726-RA 460..1301 13..856 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:28:48 Download gff for BO11870.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23092330..23092547 639..856 99 -> Minus
3R 23092601..23093018 221..638 100 -> Minus
3R 23093082..23093287 13..220 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:25:14 Download gff for BO11870.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18918804..18919009 13..220 98   Minus
arm_3R 18918323..18918740 221..638 100 -> Minus
arm_3R 18918052..18918269 639..856 99 -> Minus

BO11870.5prime Sequence

788 bp (646 high quality bases) assembled on 2006-04-19

> BO11870.5prime
GAAGTTATCAGTCGACATGAGTACAGCCAAGTGGGAGAACAACGAGGAGA
TTAAGATCTTTCGCGAATATCTTCGCATACCAACGGTGCATCCAAATGTG
GATTACACCGTTTGCACGGAATTCTTGAAACGCCAGGCTGCCAGCTTGGA
CCTGCCCGTGGAGGTTATCTATCCGGTGAACGAGCAGAATCCCGTGGTGG
TGCTAAAATGGCAGGGTTCCCAGCCGGAACTGCCCTCCATCATTCTCAAT
TCGCACACGGATGTAGTGCCCGTTTTTGAGGAGAAGTGGACACACGGTCC
ATTCAGCGCGGATCTAGATGCAGAGGGTCGCATCTTTGCGCGCGGATCGC
AGGACATGAAGTGCGTGGGCACCCAATATCTGGGAGCTGTGCGTGCCCTC
AAGGCCAGTGGCTATCAACCCAAGAGGACGATCTATCTCACTTATGTTCC
GGACGAGGAGGTTGGCGGCCACCTGGGCATGCGGGAGCTGGTAAAGAGCG
ACTACTTCAAGAAGCTCAATGTGGGATTCAGTTTCGACGAGGGAATCTCT
AGTGCGGATGAAACCTACGCTCTGTACTACGCTGAACGGACTCTTTGGCA
TCTTCGTTTCAAGATCAGCGGAACTGCTGGTCACGGATCACTGTTGCTCC
CGAATACTGCTGGCGAGAAGCTGAACTATGTGGTAGGCAAAATGATGGAG
TTCCCGCAATCGCAAGTTGCAAAACTAGCTGACGACTCATCCCTCGAAAT
TGGTGATGTGACCACTGTGAATCTCACCCCACTGAGGG

BO11870.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6726-PB 1206 CG6726-RB 1..688 17..704 3440 100 Plus
CG6726-PA 1206 CG6726-RA 1..688 17..704 3440 100 Plus
CG6726-PB 1206 CG6726-RB 705..772 721..788 315 98.5 Plus
CG6726-PA 1206 CG6726-RA 705..772 721..788 315 98.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG17110-RC 2911 CG17110-RC 42..813 17..788 3755 99.4 Plus
CG6726-RC 2911 CG6726-RC 42..813 17..788 3755 99.4 Plus
CG6726-RA 1473 CG6726-RA 95..866 17..788 3755 99.4 Plus
CG17110-RC 2911 CG17110-RC 1899..2209 337..647 270 72.8 Plus
CG6726-RC 2911 CG6726-RC 1899..2209 337..647 270 72.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23092056..23092547 108..599 2460 100 Plus
3R 32079331 3R 23092601..23092789 600..788 840 96.3 Plus
3R 32079331 3R 23091871..23091961 17..107 455 100 Plus
3R 32079331 3R 23095893..23096315 118..543 385 73.2 Plus
3R 32079331 3R 23098035..23098330 236..531 325 74 Plus
3R 32079331 3R 10676275..10676370 702..607 240 83.3 Minus
3R 32079331 3R 23095745..23095823 29..107 230 86.1 Plus
3R 32079331 3R 23094059..23094283 337..561 225 73.3 Plus
3R 32079331 3R 23099842..23100080 231..469 205 72.4 Plus
3R 32079331 3R 23097771..23097841 29..99 190 84.5 Plus
Blast to na_te.dros performed on 2015-02-11 10:32:17 has no hits.

BO11870.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:13 Download gff for BO11870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6726-PB 1..772 17..788 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:00 Download gff for BO11870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6726-PA 1..772 17..788 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 03:06:30 Download gff for BO11870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6726-RB 34..813 10..788 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:31:07 Download gff for BO11870.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6726-RA 81..866 5..788 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:31:07 Download gff for BO11870.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23092601..23092789 600..788 97   Plus
3R 23091857..23091961 5..107 95 -> Plus
3R 23092056..23092547 108..599 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 03:06:30 Download gff for BO11870.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18917579..18917683 5..107 95 -> Plus
arm_3R 18917778..18918269 108..599 100 -> Plus
arm_3R 18918323..18918511 600..788 97   Plus

BO11870.complete Sequence

1237 bp assembled on 2006-10-11

GenBank Submission: FJ632227

> BO11870.complete
GAAGTTATCAGTCGACATGAGTACAGCCAAGTGGGAGAACAACGAGGAGA
TTAAGATCTTTCGCGAATATCTTCGCATACCAACGGTGCATCCAAATGTG
GATTACACCGTTTGCACGGAATTCTTGAAACGCCAGGCTGCCAGCTTGGA
CCTGCCCGTGGAGGTTATCTATCCGGTGAACGAGCAGAATCCCGTGGTGG
TGCTAAAATGGCAGGGTTCCCAGCCGGAACTGCCCTCCATCATTCTCAAT
TCGCACACGGATGTAGTGCCCGTTTTTGAGGAGAAGTGGACACACGGTCC
ATTCAGCGCGGATCTAGATGCAGAGGGTCGCATCTTTGCGCGCGGATCGC
AGGACATGAAGTGCGTGGGCACCCAATATCTGGGAGCTGTGCGTGCCCTC
AAGGCCAGTGGCTATCAACCCAAGAGGACGATCTATCTCACTTATGTTCC
GGACGAGGAGGTTGGCGGCCACCTGGGCATGCGGGAGCTGGTAAAGAGCG
ACTACTTCAAGAAGCTCAATGTGGGATTCAGTTTCGACGAGGGAATCTCT
AGTGCGGATGAAACCTACGCTCTGTACTACGCTGAACGGACTCTTTGGCA
TCTTCGTTTCAAGATCAGCGGAACTGCTGGTCACGGATCACTGTTGCTCC
CGAATACTGCTGGCGAGAAGCTGAACTATGTGGTAGGCAAAATGATGGAG
TTCCGCAAATCGCAAGTGCAAAAACTAGCTGACGACTCATCCCTCGAAAT
TGGTGATGTGACCACTGTGAATCTCACCCAACTGAGGGGCGGAGTCCAGA
GCAACGTGGTTCCCCCATTGCTGGAAGCTGTATTTGATATCCGCATTGCC
GTCACCGTGGATATCCCTGCCTTTGAGAAGCAGATTCGCGACTGGTGCGA
GGAGGCTGGCGGCGGCATTGAACTGGAGTTTGAGATGAAAAACCCCTTTG
TGGAGCCAACAAAGATTGACTCGTCGAATGCCTACTGGCTGGCCTTTAAG
AAAGCACTCGATGACCTTGGCCTCAAGACACGGGTTCGTGTTTTCCCCGG
CGCCACGGACAGTCGTTATATTCGCTACGCAGGCATTCCAGCTCTAGGAT
TCTCGCCCATTAACAACACCCCCATCCTGCTGCACGACCACGATGAATTC
CTGAAAGCCGATACCTATTTGCACGGCATTGAGGTTTACAAGAAGCTCAT
TCCTGCCGTAGCTGATGCTGCAAGCTTTCTAGACCAT

BO11870.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:35:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG6726-RC 1206 CG6726-PC 1..1203 17..1219 6015 100 Plus
CG6726-RA 1206 CG6726-PA 1..1203 17..1219 6015 100 Plus
CG6726-RB 1206 CG6726-PB 1..1203 17..1219 6015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:35:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG17110-RC 2911 CG17110-RC 42..1244 17..1219 6015 100 Plus
CG6726-RC 2911 CG6726-RC 42..1244 17..1219 6015 100 Plus
CG6726-RA 1473 CG6726-RA 95..1297 17..1219 6015 100 Plus
CG17110-RC 2911 CG17110-RC 1899..2759 337..1200 535 71.1 Plus
CG6726-RC 2911 CG6726-RC 1899..2759 337..1200 535 71.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:35:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23092056..23092547 108..599 2460 100 Plus
3R 32079331 3R 23092601..23093018 600..1017 2090 100 Plus
3R 32079331 3R 23093082..23093283 1018..1219 1010 100 Plus
3R 32079331 3R 23091871..23091961 17..107 455 100 Plus
3R 32079331 3R 23098473..23098780 615..922 445 76.3 Plus
3R 32079331 3R 23095893..23096315 118..543 385 73.2 Plus
3R 32079331 3R 23096447..23096750 615..918 365 74.7 Plus
3R 32079331 3R 23098035..23098330 236..531 325 74 Plus
3R 32079331 3R 10676275..10676370 702..607 240 83.3 Minus
3R 32079331 3R 23100419..23100585 755..921 235 76 Plus
3R 32079331 3R 23095745..23095823 29..107 230 86.1 Plus
3R 32079331 3R 23094532..23094678 752..898 225 76.9 Plus
3R 32079331 3R 23094059..23094283 337..561 225 73.3 Plus
3R 32079331 3R 23094917..23095032 1085..1200 220 79.3 Plus
3R 32079331 3R 23099842..23100080 231..469 205 72.4 Plus
3R 32079331 3R 23097771..23097841 29..99 190 84.5 Plus
Blast to na_te.dros performed on 2014-11-27 23:35:26 has no hits.

BO11870.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:10 Download gff for BO11870.complete
Subject Subject Range Query Range Percent Splice Strand
CG6726-RA 1..1206 17..1220 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:09 Download gff for BO11870.complete
Subject Subject Range Query Range Percent Splice Strand
CG6726-RB 31..1245 10..1225 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:32:45 Download gff for BO11870.complete
Subject Subject Range Query Range Percent Splice Strand
CG6726-RB 42..1244 17..1221 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:10 Download gff for BO11870.complete
Subject Subject Range Query Range Percent Splice Strand
CG6726-RA 81..1301 5..1225 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:01 Download gff for BO11870.complete
Subject Subject Range Query Range Percent Splice Strand
CG6726-RA 95..1297 17..1221 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:01 Download gff for BO11870.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23091871..23091961 17..107 100 -> Plus
3R 23092056..23092547 108..599 100 -> Plus
3R 23092601..23093018 600..1017 100 -> Plus
3R 23093082..23093283 1018..1221 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:32:45 Download gff for BO11870.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18917593..18917683 17..107 100 -> Plus
arm_3R 18917778..18918269 108..599 100 -> Plus
arm_3R 18918323..18918740 600..1017 100 -> Plus
arm_3R 18918804..18919005 1018..1221 99   Plus

BO11870.pep Sequence

Translation from 16 to 1237

> BO11870.pep
MSTAKWENNEEIKIFREYLRIPTVHPNVDYTVCTEFLKRQAASLDLPVEV
IYPVNEQNPVVVLKWQGSQPELPSIILNSHTDVVPVFEEKWTHGPFSADL
DAEGRIFARGSQDMKCVGTQYLGAVRALKASGYQPKRTIYLTYVPDEEVG
GHLGMRELVKSDYFKKLNVGFSFDEGISSADETYALYYAERTLWHLRFKI
SGTAGHGSLLLPNTAGEKLNYVVGKMMEFRKSQVQKLADDSSLEIGDVTT
VNLTQLRGGVQSNVVPPLLEAVFDIRIAVTVDIPAFEKQIRDWCEEAGGG
IELEFEMKNPFVEPTKIDSSNAYWLAFKKALDDLGLKTRVRVFPGATDSR
YIRYAGIPALGFSPINNTPILLHDHDEFLKADTYLHGIEVYKKLIPAVAD
AASFLDH

BO11870.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG6726-PC 401 CG6726-PC 1..401 1..401 2097 100 Plus
CG6726-PA 401 CG6726-PA 1..401 1..401 2097 100 Plus
CG6726-PB 401 CG6726-PB 1..401 1..401 2097 100 Plus
CG6733-PA 401 CG6733-PA 1..400 1..400 1571 72 Plus
CG17110-PB 402 CG17110-PB 5..402 3..401 1526 70.2 Plus