Clone Sequence Records
BO11870.3prime Sequence
856 bp (787 high quality bases) assembled on 2006-04-19
> BO11870.3prime
ATGGTCTAGAAAGCTTGCAGCATCAGCTACGGCAGGAATGAGCTTCTTGT
AAACCTCAATGCCGTGCAAATAGGTATCGGCTTTCAGGAATTCATCGTGG
TCGTGCAGCAGGATGGGGGTGTTGTTAATGGGCGAGAATCCTAGAGCTGG
AATGCCTGCGTAGCGAATATAACGACTGTCCGTGGCGCCGGGGAAAACAC
GAACCCGTGTCTTGAGGCCAAGGTCATCGAGTGCTTTCTTAAAGGCCAGC
CAGTAGGCATTCGACGAGTCAATCTTTGTTGGCTCCACAAAGGGGTTTTT
CATCTCAAACTCCAGTTCAATGCCGCCGCCAGCCTCCTCGCACCAGTCGC
GAATCTGCTTCTCAAAGGCAGGGATATCCACGGTGACGGCAATGCGGATA
TCAAATACAGCTTCCAGCAATGGGGGAACCACGTTGCTCTGGACTCCGCC
CCTCAGTTGGGTGAGATTCACAGTGGTCACATCACCAATTTCGAGGGATG
AGTCGTCAGCTAGTTTTTGCACTTGCGATTTGCGGAACTCCATCATTTTG
CCTACCACATAGTTCAGCTTCTCGCCAGCAGTATTCGGGAGCAACAGTGA
TCCGTGACCAGCAGTTCCGCTGATCTTGAAACGAAGATGCCAAAGAGTCC
GTTCAGCGTAGTACAGAGCGTAGGTTTCATCCGCACTAGAGATTCCCTCG
TCGAAACTGAATCCCACATTGAGCTTCTTGAAGTAGTCGCTCTTTACCAG
CTCCCGCATGCCCAGGTGGCCGCCAACCTCCTCGTCCGGAACATAATTGA
GATAGATCGTCCTCTTGGGTTGATAGCCACTGGCCTTGAGGGCACGCACA
GCTCCC
BO11870.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6726-PB | 1206 | CG6726-RB | 366..1203 | 856..19 | 4165 | 99.8 | Minus |
CG6726-PA | 1206 | CG6726-RA | 366..1203 | 856..19 | 4165 | 99.8 | Minus |
CG6733-PA | 1206 | CG6733-RA | 852..906 | 370..316 | 150 | 90.9 | Minus |
CG6738-PA | 1206 | CG6738-RA | 739..797 | 483..425 | 145 | 89.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:04:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17110-RC | 2911 | CG17110-RC | 407..1244 | 856..19 | 4175 | 99.9 | Minus |
CG6726-RC | 2911 | CG6726-RC | 407..1244 | 856..19 | 4175 | 99.9 | Minus |
CG6726-RA | 1473 | CG6726-RA | 460..1297 | 856..19 | 4175 | 99.9 | Minus |
CG17110-RC | 2911 | CG17110-RC | 1954..2759 | 846..38 | 515 | 71.8 | Minus |
CG6726-RC | 2911 | CG6726-RC | 1954..2759 | 846..38 | 515 | 71.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:04:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23092601..23093018 | 638..221 | 2090 | 100 | Minus |
3R | 32079331 | 3R | 23092330..23092547 | 856..639 | 1075 | 99.5 | Minus |
3R | 32079331 | 3R | 23093082..23093283 | 220..19 | 1010 | 100 | Minus |
3R | 32079331 | 3R | 23098473..23098780 | 623..316 | 445 | 76.3 | Minus |
3R | 32079331 | 3R | 23096447..23096750 | 623..320 | 365 | 74.7 | Minus |
3R | 32079331 | 3R | 10676275..10676370 | 536..631 | 240 | 83.3 | Plus |
3R | 32079331 | 3R | 23100419..23100585 | 483..317 | 235 | 76 | Minus |
3R | 32079331 | 3R | 23094532..23094678 | 486..340 | 225 | 76.9 | Minus |
3R | 32079331 | 3R | 23094917..23095032 | 153..38 | 220 | 79.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:04:41 has no hits.
BO11870.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:12 Download gff for
BO11870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6726-PB | 366..1206 | 18..856 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:47:58 Download gff for
BO11870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6726-PA | 366..1206 | 18..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:25:14 Download gff for
BO11870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6726-RB | 407..1248 | 13..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:28:48 Download gff for
BO11870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6726-RA | 460..1301 | 13..856 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:28:48 Download gff for
BO11870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23092330..23092547 | 639..856 | 99 | -> | Minus |
3R | 23092601..23093018 | 221..638 | 100 | -> | Minus |
3R | 23093082..23093287 | 13..220 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:25:14 Download gff for
BO11870.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18918804..18919009 | 13..220 | 98 | | Minus |
arm_3R | 18918323..18918740 | 221..638 | 100 | -> | Minus |
arm_3R | 18918052..18918269 | 639..856 | 99 | -> | Minus |
BO11870.5prime Sequence
788 bp (646 high quality bases) assembled on 2006-04-19
> BO11870.5prime
GAAGTTATCAGTCGACATGAGTACAGCCAAGTGGGAGAACAACGAGGAGA
TTAAGATCTTTCGCGAATATCTTCGCATACCAACGGTGCATCCAAATGTG
GATTACACCGTTTGCACGGAATTCTTGAAACGCCAGGCTGCCAGCTTGGA
CCTGCCCGTGGAGGTTATCTATCCGGTGAACGAGCAGAATCCCGTGGTGG
TGCTAAAATGGCAGGGTTCCCAGCCGGAACTGCCCTCCATCATTCTCAAT
TCGCACACGGATGTAGTGCCCGTTTTTGAGGAGAAGTGGACACACGGTCC
ATTCAGCGCGGATCTAGATGCAGAGGGTCGCATCTTTGCGCGCGGATCGC
AGGACATGAAGTGCGTGGGCACCCAATATCTGGGAGCTGTGCGTGCCCTC
AAGGCCAGTGGCTATCAACCCAAGAGGACGATCTATCTCACTTATGTTCC
GGACGAGGAGGTTGGCGGCCACCTGGGCATGCGGGAGCTGGTAAAGAGCG
ACTACTTCAAGAAGCTCAATGTGGGATTCAGTTTCGACGAGGGAATCTCT
AGTGCGGATGAAACCTACGCTCTGTACTACGCTGAACGGACTCTTTGGCA
TCTTCGTTTCAAGATCAGCGGAACTGCTGGTCACGGATCACTGTTGCTCC
CGAATACTGCTGGCGAGAAGCTGAACTATGTGGTAGGCAAAATGATGGAG
TTCCCGCAATCGCAAGTTGCAAAACTAGCTGACGACTCATCCCTCGAAAT
TGGTGATGTGACCACTGTGAATCTCACCCCACTGAGGG
BO11870.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6726-PB | 1206 | CG6726-RB | 1..688 | 17..704 | 3440 | 100 | Plus |
CG6726-PA | 1206 | CG6726-RA | 1..688 | 17..704 | 3440 | 100 | Plus |
CG6726-PB | 1206 | CG6726-RB | 705..772 | 721..788 | 315 | 98.5 | Plus |
CG6726-PA | 1206 | CG6726-RA | 705..772 | 721..788 | 315 | 98.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:32:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17110-RC | 2911 | CG17110-RC | 42..813 | 17..788 | 3755 | 99.4 | Plus |
CG6726-RC | 2911 | CG6726-RC | 42..813 | 17..788 | 3755 | 99.4 | Plus |
CG6726-RA | 1473 | CG6726-RA | 95..866 | 17..788 | 3755 | 99.4 | Plus |
CG17110-RC | 2911 | CG17110-RC | 1899..2209 | 337..647 | 270 | 72.8 | Plus |
CG6726-RC | 2911 | CG6726-RC | 1899..2209 | 337..647 | 270 | 72.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:32:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23092056..23092547 | 108..599 | 2460 | 100 | Plus |
3R | 32079331 | 3R | 23092601..23092789 | 600..788 | 840 | 96.3 | Plus |
3R | 32079331 | 3R | 23091871..23091961 | 17..107 | 455 | 100 | Plus |
3R | 32079331 | 3R | 23095893..23096315 | 118..543 | 385 | 73.2 | Plus |
3R | 32079331 | 3R | 23098035..23098330 | 236..531 | 325 | 74 | Plus |
3R | 32079331 | 3R | 10676275..10676370 | 702..607 | 240 | 83.3 | Minus |
3R | 32079331 | 3R | 23095745..23095823 | 29..107 | 230 | 86.1 | Plus |
3R | 32079331 | 3R | 23094059..23094283 | 337..561 | 225 | 73.3 | Plus |
3R | 32079331 | 3R | 23099842..23100080 | 231..469 | 205 | 72.4 | Plus |
3R | 32079331 | 3R | 23097771..23097841 | 29..99 | 190 | 84.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:32:17 has no hits.
BO11870.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:13 Download gff for
BO11870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6726-PB | 1..772 | 17..788 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:00 Download gff for
BO11870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6726-PA | 1..772 | 17..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 03:06:30 Download gff for
BO11870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6726-RB | 34..813 | 10..788 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:31:07 Download gff for
BO11870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6726-RA | 81..866 | 5..788 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:31:07 Download gff for
BO11870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23092601..23092789 | 600..788 | 97 | | Plus |
3R | 23091857..23091961 | 5..107 | 95 | -> | Plus |
3R | 23092056..23092547 | 108..599 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 03:06:30 Download gff for
BO11870.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18917579..18917683 | 5..107 | 95 | -> | Plus |
arm_3R | 18917778..18918269 | 108..599 | 100 | -> | Plus |
arm_3R | 18918323..18918511 | 600..788 | 97 | | Plus |
BO11870.complete Sequence
1237 bp assembled on 2006-10-11
GenBank Submission: FJ632227
> BO11870.complete
GAAGTTATCAGTCGACATGAGTACAGCCAAGTGGGAGAACAACGAGGAGA
TTAAGATCTTTCGCGAATATCTTCGCATACCAACGGTGCATCCAAATGTG
GATTACACCGTTTGCACGGAATTCTTGAAACGCCAGGCTGCCAGCTTGGA
CCTGCCCGTGGAGGTTATCTATCCGGTGAACGAGCAGAATCCCGTGGTGG
TGCTAAAATGGCAGGGTTCCCAGCCGGAACTGCCCTCCATCATTCTCAAT
TCGCACACGGATGTAGTGCCCGTTTTTGAGGAGAAGTGGACACACGGTCC
ATTCAGCGCGGATCTAGATGCAGAGGGTCGCATCTTTGCGCGCGGATCGC
AGGACATGAAGTGCGTGGGCACCCAATATCTGGGAGCTGTGCGTGCCCTC
AAGGCCAGTGGCTATCAACCCAAGAGGACGATCTATCTCACTTATGTTCC
GGACGAGGAGGTTGGCGGCCACCTGGGCATGCGGGAGCTGGTAAAGAGCG
ACTACTTCAAGAAGCTCAATGTGGGATTCAGTTTCGACGAGGGAATCTCT
AGTGCGGATGAAACCTACGCTCTGTACTACGCTGAACGGACTCTTTGGCA
TCTTCGTTTCAAGATCAGCGGAACTGCTGGTCACGGATCACTGTTGCTCC
CGAATACTGCTGGCGAGAAGCTGAACTATGTGGTAGGCAAAATGATGGAG
TTCCGCAAATCGCAAGTGCAAAAACTAGCTGACGACTCATCCCTCGAAAT
TGGTGATGTGACCACTGTGAATCTCACCCAACTGAGGGGCGGAGTCCAGA
GCAACGTGGTTCCCCCATTGCTGGAAGCTGTATTTGATATCCGCATTGCC
GTCACCGTGGATATCCCTGCCTTTGAGAAGCAGATTCGCGACTGGTGCGA
GGAGGCTGGCGGCGGCATTGAACTGGAGTTTGAGATGAAAAACCCCTTTG
TGGAGCCAACAAAGATTGACTCGTCGAATGCCTACTGGCTGGCCTTTAAG
AAAGCACTCGATGACCTTGGCCTCAAGACACGGGTTCGTGTTTTCCCCGG
CGCCACGGACAGTCGTTATATTCGCTACGCAGGCATTCCAGCTCTAGGAT
TCTCGCCCATTAACAACACCCCCATCCTGCTGCACGACCACGATGAATTC
CTGAAAGCCGATACCTATTTGCACGGCATTGAGGTTTACAAGAAGCTCAT
TCCTGCCGTAGCTGATGCTGCAAGCTTTCTAGACCAT
BO11870.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:35:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6726-RC | 1206 | CG6726-PC | 1..1203 | 17..1219 | 6015 | 100 | Plus |
CG6726-RA | 1206 | CG6726-PA | 1..1203 | 17..1219 | 6015 | 100 | Plus |
CG6726-RB | 1206 | CG6726-PB | 1..1203 | 17..1219 | 6015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:35:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17110-RC | 2911 | CG17110-RC | 42..1244 | 17..1219 | 6015 | 100 | Plus |
CG6726-RC | 2911 | CG6726-RC | 42..1244 | 17..1219 | 6015 | 100 | Plus |
CG6726-RA | 1473 | CG6726-RA | 95..1297 | 17..1219 | 6015 | 100 | Plus |
CG17110-RC | 2911 | CG17110-RC | 1899..2759 | 337..1200 | 535 | 71.1 | Plus |
CG6726-RC | 2911 | CG6726-RC | 1899..2759 | 337..1200 | 535 | 71.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:35:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23092056..23092547 | 108..599 | 2460 | 100 | Plus |
3R | 32079331 | 3R | 23092601..23093018 | 600..1017 | 2090 | 100 | Plus |
3R | 32079331 | 3R | 23093082..23093283 | 1018..1219 | 1010 | 100 | Plus |
3R | 32079331 | 3R | 23091871..23091961 | 17..107 | 455 | 100 | Plus |
3R | 32079331 | 3R | 23098473..23098780 | 615..922 | 445 | 76.3 | Plus |
3R | 32079331 | 3R | 23095893..23096315 | 118..543 | 385 | 73.2 | Plus |
3R | 32079331 | 3R | 23096447..23096750 | 615..918 | 365 | 74.7 | Plus |
3R | 32079331 | 3R | 23098035..23098330 | 236..531 | 325 | 74 | Plus |
3R | 32079331 | 3R | 10676275..10676370 | 702..607 | 240 | 83.3 | Minus |
3R | 32079331 | 3R | 23100419..23100585 | 755..921 | 235 | 76 | Plus |
3R | 32079331 | 3R | 23095745..23095823 | 29..107 | 230 | 86.1 | Plus |
3R | 32079331 | 3R | 23094532..23094678 | 752..898 | 225 | 76.9 | Plus |
3R | 32079331 | 3R | 23094059..23094283 | 337..561 | 225 | 73.3 | Plus |
3R | 32079331 | 3R | 23094917..23095032 | 1085..1200 | 220 | 79.3 | Plus |
3R | 32079331 | 3R | 23099842..23100080 | 231..469 | 205 | 72.4 | Plus |
3R | 32079331 | 3R | 23097771..23097841 | 29..99 | 190 | 84.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:35:26 has no hits.
BO11870.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:10 Download gff for
BO11870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6726-RA | 1..1206 | 17..1220 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:09 Download gff for
BO11870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6726-RB | 31..1245 | 10..1225 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:32:45 Download gff for
BO11870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6726-RB | 42..1244 | 17..1221 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:10 Download gff for
BO11870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6726-RA | 81..1301 | 5..1225 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:01 Download gff for
BO11870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6726-RA | 95..1297 | 17..1221 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:01 Download gff for
BO11870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23091871..23091961 | 17..107 | 100 | -> | Plus |
3R | 23092056..23092547 | 108..599 | 100 | -> | Plus |
3R | 23092601..23093018 | 600..1017 | 100 | -> | Plus |
3R | 23093082..23093283 | 1018..1221 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:32:45 Download gff for
BO11870.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18917593..18917683 | 17..107 | 100 | -> | Plus |
arm_3R | 18917778..18918269 | 108..599 | 100 | -> | Plus |
arm_3R | 18918323..18918740 | 600..1017 | 100 | -> | Plus |
arm_3R | 18918804..18919005 | 1018..1221 | 99 | | Plus |
BO11870.pep Sequence
Translation from 16 to 1237
> BO11870.pep
MSTAKWENNEEIKIFREYLRIPTVHPNVDYTVCTEFLKRQAASLDLPVEV
IYPVNEQNPVVVLKWQGSQPELPSIILNSHTDVVPVFEEKWTHGPFSADL
DAEGRIFARGSQDMKCVGTQYLGAVRALKASGYQPKRTIYLTYVPDEEVG
GHLGMRELVKSDYFKKLNVGFSFDEGISSADETYALYYAERTLWHLRFKI
SGTAGHGSLLLPNTAGEKLNYVVGKMMEFRKSQVQKLADDSSLEIGDVTT
VNLTQLRGGVQSNVVPPLLEAVFDIRIAVTVDIPAFEKQIRDWCEEAGGG
IELEFEMKNPFVEPTKIDSSNAYWLAFKKALDDLGLKTRVRVFPGATDSR
YIRYAGIPALGFSPINNTPILLHDHDEFLKADTYLHGIEVYKKLIPAVAD
AASFLDH
BO11870.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6726-PC | 401 | CG6726-PC | 1..401 | 1..401 | 2097 | 100 | Plus |
CG6726-PA | 401 | CG6726-PA | 1..401 | 1..401 | 2097 | 100 | Plus |
CG6726-PB | 401 | CG6726-PB | 1..401 | 1..401 | 2097 | 100 | Plus |
CG6733-PA | 401 | CG6733-PA | 1..400 | 1..400 | 1571 | 72 | Plus |
CG17110-PB | 402 | CG17110-PB | 5..402 | 3..401 | 1526 | 70.2 | Plus |