Clone Sequence Records
BO11871.3prime Sequence
870 bp (787 high quality bases) assembled on 2006-04-19
> BO11871.3prime
ATGGTCTAGAAAGCTTGCCTTGACCTTTCCGATAATGTCCAGCAGAAAGG
GTGTGTAGTAGGTGATGATGCAATCGGCACCAGCTCGTCGAAAGCCCTTC
ATGGCCTCCAGCACGGCATCCTTGAGGTCAAAGGCTCCCGCCTTGGCGGC
ATGATACAGCATAGCGAACTCCCCGGAAACCTGGTAGACGTACAGCGTGT
GATACGGATAGGAATCCTTTGTGGATCGTAGGATATCCAGATAGGGCATT
CCCGGTTTCACCATCAGCATGTCGGCTCCCTCGGCGACATCACGTTGAAT
GGCTCTCATTGCTAAGCTTCTGGAGCCACTGGGCAGTTGATAGCACCTCC
GGTCACCGAATTTCGGTGCAGATTGTGCTGCCTCCCGGAAGGGTCCATAG
AAATTGGATGTGAACTTGGCGGAGTACGCCAGCAGGGATACACTGTTCAT
CTGGGCATCGATGAGGGCCTGCTTAATGGCCTTCACCCGGTTGTCCATCA
TGTCCGATGGAGCCACAATGTGTGCTCCAGCTTTGGCATAAGCCACGGCG
ATCTCGGCTATCCGCTTTATGCTGGGTCCGTTCTCCAGACCCGTTTCGCC
CAGCAGGCCGCAGTGACCGTGCGAGGAGTACGGGCAGATGCACACATCAC
AGGCTATCAGCAGATCCGGAAACCATTCCCGGAGCTTCGGCAGTGCGAGA
ACGACTGGATTCTTTGCTGAATCCGCATTGGAGGCCTGCTCATCCTTCAT
GTCCGGGTCCACAACGCCAAAGAGCAGCACCGACGACAGTCCCTTGGCCA
CCAGCGGTTCCAGGTGCTCCTTCAGGCGATTCAGTCCGAATCTCGAGATT
CCTGGCATGCTGGCAATTGG
BO11871.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10335-PA | 984 | Pbgs-RA | 130..981 | 870..19 | 4260 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-07 01:51:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pbgs-RB | 1894 | CG10335-RB | 200..1051 | 870..19 | 4260 | 100 | Minus |
Pbgs-RA | 1378 | CG10335-RA | 200..1051 | 870..19 | 4260 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-07 01:50:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12270295..12271146 | 19..870 | 4260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-07 01:50:59 has no hits.
BO11871.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:14 Download gff for
BO11871.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pbgs-PA | 130..984 | 15..870 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:02 Download gff for
BO11871.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10335-PA | 130..984 | 15..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 11:22:49 Download gff for
BO11871.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pbgs-RA | 200..1054 | 15..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-07 06:01:09 Download gff for
BO11871.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pbgs-RA | 200..1054 | 15..870 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-07 06:01:09 Download gff for
BO11871.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12270292..12271146 | 15..870 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 11:22:49 Download gff for
BO11871.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12263392..12264246 | 15..870 | 99 | | Plus |
BO11871.5prime Sequence
849 bp (794 high quality bases) assembled on 2006-04-19
> BO11871.5prime
GAAGTTATCAGTCGACATGGAGCGGAAACTGCACAGTGGAATGCACCATG
CCACGCTGCGGCAGCTGCAGGAGTCGGGCTGCGAGATAGCGCCGCACAAT
CTCATGTATCCGGTGTTCATCGTGAGCAACGACGACGATGTCCAGCCAAT
TGCCAGCATGCCAGGAATCTCGAGATTCGGACTGAATCGCCTGAAGGAGC
ACCTGGAACCGCTGGTGGCCAAGGGACTGTCGTCGGTGCTGCTCTTTGGC
GTTGTGGACCCGGACATGAAGGATGAGCAGGCCTCCAATGCGGATTCAGC
AAAGAATCCAGTCGTTCTCGCACTGCCGAAGCTCCGGGAATGGTTTCCGG
ATCTGCTGATAGCCTGTGATGTGTGCATCTGCCCGTACTCCTCGCACGGT
CACTGCGGCCTGCTGGGCGAAACGGGTCTGGAGAACGGACCCAGCATAAA
GCGGATAGCCGAGATCGCCGTGGCTTATGCCAAAGCTGGAGCACACATTG
TGGCTCCATCGGACATGATGGACAACCGGGTGAAGGCCATTAAGCAGGCC
CTCATCGATGCCCAGATGAACAGTGTATCCCTGCTGGCGTACTCCGCCAA
GTTCACATCCAATTTCTATGGACCCTTCCGGGAGGCAGCACAATCTGCAC
CGAAATTCGGTGACCGGAGGTGCTATCAACTGCCCAGTGGCTCCAGAAGC
TTAGCAATGAGAGCCATTCAACGTGATGTCGCCGAGGGAGCCGACATGCT
GATGGTGAAACCGGGAATGCCCTATCTGGATATCCTACGATCCACAAAGG
ATTCCTATCCGTATCACACGCTGTACGTCTACCAGGTTTCCGGGGAGTT
BO11871.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10335-PA | 984 | Pbgs-RA | 1..833 | 17..849 | 4165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:07:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pbgs-RB | 1894 | CG10335-RB | 71..903 | 17..849 | 4165 | 100 | Plus |
Pbgs-RA | 1378 | CG10335-RA | 71..903 | 17..849 | 4165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:07:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12270443..12271275 | 849..17 | 4165 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:07:53 has no hits.
BO11871.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:15 Download gff for
BO11871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pbgs-PA | 1..833 | 17..849 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:04 Download gff for
BO11871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10335-PA | 1..833 | 17..849 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:50:54 Download gff for
BO11871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pbgs-RA | 71..903 | 17..849 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:56:03 Download gff for
BO11871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pbgs-RA | 71..903 | 17..849 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:56:03 Download gff for
BO11871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12270443..12271275 | 17..849 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:50:54 Download gff for
BO11871.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12263543..12264375 | 17..849 | 100 | | Minus |
BO11871.complete Sequence
1015 bp assembled on 2006-10-11
GenBank Submission: FJ638691
> BO11871.complete
GAAGTTATCAGTCGACATGGAGCGGAAACTGCACAGTGGAATGCACCATG
CCACGCTGCGGCAGCTGCAGGAGTCGGGCTGCGAGATAGCGCCGCACAAT
CTCATGTATCCGGTGTTCATCGTGAGCAACGACGACGATGTCCAGCCAAT
TGCCAGCATGCCAGGAATCTCGAGATTCGGACTGAATCGCCTGAAGGAGC
ACCTGGAACCGCTGGTGGCCAAGGGACTGTCGTCGGTGCTGCTCTTTGGC
GTTGTGGACCCGGACATGAAGGATGAGCAGGCCTCCAATGCGGATTCAGC
AAAGAATCCAGTCGTTCTCGCACTGCCGAAGCTCCGGGAATGGTTTCCGG
ATCTGCTGATAGCCTGTGATGTGTGCATCTGCCCGTACTCCTCGCACGGT
CACTGCGGCCTGCTGGGCGAAACGGGTCTGGAGAACGGACCCAGCATAAA
GCGGATAGCCGAGATCGCCGTGGCTTATGCCAAAGCTGGAGCACACATTG
TGGCTCCATCGGACATGATGGACAACCGGGTGAAGGCCATTAAGCAGGCC
CTCATCGATGCCCAGATGAACAGTGTATCCCTGCTGGCGTACTCCGCCAA
GTTCACATCCAATTTCTATGGACCCTTCCGGGAGGCAGCACAATCTGCAC
CGAAATTCGGTGACCGGAGGTGCTATCAACTGCCCAGTGGCTCCAGAAGC
TTAGCAATGAGAGCCATTCAACGTGATGTCGCCGAGGGAGCCGACATGCT
GATGGTGAAACCGGGAATGCCCTATCTGGATATCCTACGATCCACAAAGG
ATTCCTATCCGTATCACACGCTGTACGTCTACCAGGTTTCCGGGGAGTTC
GCTATGCTGTATCATGCCGCCAAGGCGGGAGCCTTTGACCTCAAGGATGC
CGTGCTGGAGGCCATGAAGGGCTTTCGACGAGCTGGTGCCGATTGCATCA
TCACCTACTACACACCCTTTCTGCTGGACATTATCGGAAAGGTCAAGGCA
AGCTTTCTAGACCAT
BO11871.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:24:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pbgs-RB | 984 | CG10335-PB | 1..981 | 17..997 | 4905 | 100 | Plus |
Pbgs-RA | 984 | CG10335-PA | 1..981 | 17..997 | 4905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:24:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pbgs-RB | 1894 | CG10335-RB | 71..1051 | 17..997 | 4905 | 100 | Plus |
Pbgs-RA | 1378 | CG10335-RA | 71..1051 | 17..997 | 4905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:24:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12270295..12271275 | 997..17 | 4905 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:24:03 has no hits.
BO11871.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:26 Download gff for
BO11871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pbgs-RA | 1..984 | 17..1001 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:30 Download gff for
BO11871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pbgs-RA | 56..1039 | 17..1001 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:14:05 Download gff for
BO11871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pbgs-RA | 71..1051 | 17..999 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:26 Download gff for
BO11871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pbgs-RA | 56..1039 | 17..1001 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:53 Download gff for
BO11871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pbgs-RA | 71..1051 | 17..999 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:53 Download gff for
BO11871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12270293..12271275 | 17..999 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:14:05 Download gff for
BO11871.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12263393..12264375 | 17..999 | 99 | | Minus |
BO11871.pep Sequence
Translation from 16 to 1015
> BO11871.pep
MERKLHSGMHHATLRQLQESGCEIAPHNLMYPVFIVSNDDDVQPIASMPG
ISRFGLNRLKEHLEPLVAKGLSSVLLFGVVDPDMKDEQASNADSAKNPVV
LALPKLREWFPDLLIACDVCICPYSSHGHCGLLGETGLENGPSIKRIAEI
AVAYAKAGAHIVAPSDMMDNRVKAIKQALIDAQMNSVSLLAYSAKFTSNF
YGPFREAAQSAPKFGDRRCYQLPSGSRSLAMRAIQRDVAEGADMLMVKPG
MPYLDILRSTKDSYPYHTLYVYQVSGEFAMLYHAAKAGAFDLKDAVLEAM
KGFRRAGADCIITYYTPFLLDIIGKVKASFLDH
BO11871.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pbgs-PB | 327 | CG10335-PB | 1..327 | 1..327 | 1697 | 100 | Plus |
Pbgs-PA | 327 | CG10335-PA | 1..327 | 1..327 | 1697 | 100 | Plus |