Clone BO11871 Report

Search the DGRC for BO11871

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:118
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptPbgs-RA
Protein status:BO11871.pep: validated full length
Sequenced Size:1015

Clone Sequence Records

BO11871.3prime Sequence

870 bp (787 high quality bases) assembled on 2006-04-19

> BO11871.3prime
ATGGTCTAGAAAGCTTGCCTTGACCTTTCCGATAATGTCCAGCAGAAAGG
GTGTGTAGTAGGTGATGATGCAATCGGCACCAGCTCGTCGAAAGCCCTTC
ATGGCCTCCAGCACGGCATCCTTGAGGTCAAAGGCTCCCGCCTTGGCGGC
ATGATACAGCATAGCGAACTCCCCGGAAACCTGGTAGACGTACAGCGTGT
GATACGGATAGGAATCCTTTGTGGATCGTAGGATATCCAGATAGGGCATT
CCCGGTTTCACCATCAGCATGTCGGCTCCCTCGGCGACATCACGTTGAAT
GGCTCTCATTGCTAAGCTTCTGGAGCCACTGGGCAGTTGATAGCACCTCC
GGTCACCGAATTTCGGTGCAGATTGTGCTGCCTCCCGGAAGGGTCCATAG
AAATTGGATGTGAACTTGGCGGAGTACGCCAGCAGGGATACACTGTTCAT
CTGGGCATCGATGAGGGCCTGCTTAATGGCCTTCACCCGGTTGTCCATCA
TGTCCGATGGAGCCACAATGTGTGCTCCAGCTTTGGCATAAGCCACGGCG
ATCTCGGCTATCCGCTTTATGCTGGGTCCGTTCTCCAGACCCGTTTCGCC
CAGCAGGCCGCAGTGACCGTGCGAGGAGTACGGGCAGATGCACACATCAC
AGGCTATCAGCAGATCCGGAAACCATTCCCGGAGCTTCGGCAGTGCGAGA
ACGACTGGATTCTTTGCTGAATCCGCATTGGAGGCCTGCTCATCCTTCAT
GTCCGGGTCCACAACGCCAAAGAGCAGCACCGACGACAGTCCCTTGGCCA
CCAGCGGTTCCAGGTGCTCCTTCAGGCGATTCAGTCCGAATCTCGAGATT
CCTGGCATGCTGGCAATTGG

BO11871.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG10335-PA 984 Pbgs-RA 130..981 870..19 4260 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-07 01:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
Pbgs-RB 1894 CG10335-RB 200..1051 870..19 4260 100 Minus
Pbgs-RA 1378 CG10335-RA 200..1051 870..19 4260 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-07 01:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12270295..12271146 19..870 4260 100 Plus
Blast to na_te.dros performed on 2015-02-07 01:50:59 has no hits.

BO11871.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:14 Download gff for BO11871.3prime
Subject Subject Range Query Range Percent Splice Strand
Pbgs-PA 130..984 15..870 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:02 Download gff for BO11871.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10335-PA 130..984 15..870 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 11:22:49 Download gff for BO11871.3prime
Subject Subject Range Query Range Percent Splice Strand
Pbgs-RA 200..1054 15..870 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-07 06:01:09 Download gff for BO11871.3prime
Subject Subject Range Query Range Percent Splice Strand
Pbgs-RA 200..1054 15..870 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-07 06:01:09 Download gff for BO11871.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12270292..12271146 15..870 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 11:22:49 Download gff for BO11871.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12263392..12264246 15..870 99   Plus

BO11871.5prime Sequence

849 bp (794 high quality bases) assembled on 2006-04-19

> BO11871.5prime
GAAGTTATCAGTCGACATGGAGCGGAAACTGCACAGTGGAATGCACCATG
CCACGCTGCGGCAGCTGCAGGAGTCGGGCTGCGAGATAGCGCCGCACAAT
CTCATGTATCCGGTGTTCATCGTGAGCAACGACGACGATGTCCAGCCAAT
TGCCAGCATGCCAGGAATCTCGAGATTCGGACTGAATCGCCTGAAGGAGC
ACCTGGAACCGCTGGTGGCCAAGGGACTGTCGTCGGTGCTGCTCTTTGGC
GTTGTGGACCCGGACATGAAGGATGAGCAGGCCTCCAATGCGGATTCAGC
AAAGAATCCAGTCGTTCTCGCACTGCCGAAGCTCCGGGAATGGTTTCCGG
ATCTGCTGATAGCCTGTGATGTGTGCATCTGCCCGTACTCCTCGCACGGT
CACTGCGGCCTGCTGGGCGAAACGGGTCTGGAGAACGGACCCAGCATAAA
GCGGATAGCCGAGATCGCCGTGGCTTATGCCAAAGCTGGAGCACACATTG
TGGCTCCATCGGACATGATGGACAACCGGGTGAAGGCCATTAAGCAGGCC
CTCATCGATGCCCAGATGAACAGTGTATCCCTGCTGGCGTACTCCGCCAA
GTTCACATCCAATTTCTATGGACCCTTCCGGGAGGCAGCACAATCTGCAC
CGAAATTCGGTGACCGGAGGTGCTATCAACTGCCCAGTGGCTCCAGAAGC
TTAGCAATGAGAGCCATTCAACGTGATGTCGCCGAGGGAGCCGACATGCT
GATGGTGAAACCGGGAATGCCCTATCTGGATATCCTACGATCCACAAAGG
ATTCCTATCCGTATCACACGCTGTACGTCTACCAGGTTTCCGGGGAGTT

BO11871.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG10335-PA 984 Pbgs-RA 1..833 17..849 4165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
Pbgs-RB 1894 CG10335-RB 71..903 17..849 4165 100 Plus
Pbgs-RA 1378 CG10335-RA 71..903 17..849 4165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12270443..12271275 849..17 4165 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:07:53 has no hits.

BO11871.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:15 Download gff for BO11871.5prime
Subject Subject Range Query Range Percent Splice Strand
Pbgs-PA 1..833 17..849 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:04 Download gff for BO11871.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10335-PA 1..833 17..849 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:50:54 Download gff for BO11871.5prime
Subject Subject Range Query Range Percent Splice Strand
Pbgs-RA 71..903 17..849 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:56:03 Download gff for BO11871.5prime
Subject Subject Range Query Range Percent Splice Strand
Pbgs-RA 71..903 17..849 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:56:03 Download gff for BO11871.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12270443..12271275 17..849 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:50:54 Download gff for BO11871.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12263543..12264375 17..849 100   Minus

BO11871.complete Sequence

1015 bp assembled on 2006-10-11

GenBank Submission: FJ638691

> BO11871.complete
GAAGTTATCAGTCGACATGGAGCGGAAACTGCACAGTGGAATGCACCATG
CCACGCTGCGGCAGCTGCAGGAGTCGGGCTGCGAGATAGCGCCGCACAAT
CTCATGTATCCGGTGTTCATCGTGAGCAACGACGACGATGTCCAGCCAAT
TGCCAGCATGCCAGGAATCTCGAGATTCGGACTGAATCGCCTGAAGGAGC
ACCTGGAACCGCTGGTGGCCAAGGGACTGTCGTCGGTGCTGCTCTTTGGC
GTTGTGGACCCGGACATGAAGGATGAGCAGGCCTCCAATGCGGATTCAGC
AAAGAATCCAGTCGTTCTCGCACTGCCGAAGCTCCGGGAATGGTTTCCGG
ATCTGCTGATAGCCTGTGATGTGTGCATCTGCCCGTACTCCTCGCACGGT
CACTGCGGCCTGCTGGGCGAAACGGGTCTGGAGAACGGACCCAGCATAAA
GCGGATAGCCGAGATCGCCGTGGCTTATGCCAAAGCTGGAGCACACATTG
TGGCTCCATCGGACATGATGGACAACCGGGTGAAGGCCATTAAGCAGGCC
CTCATCGATGCCCAGATGAACAGTGTATCCCTGCTGGCGTACTCCGCCAA
GTTCACATCCAATTTCTATGGACCCTTCCGGGAGGCAGCACAATCTGCAC
CGAAATTCGGTGACCGGAGGTGCTATCAACTGCCCAGTGGCTCCAGAAGC
TTAGCAATGAGAGCCATTCAACGTGATGTCGCCGAGGGAGCCGACATGCT
GATGGTGAAACCGGGAATGCCCTATCTGGATATCCTACGATCCACAAAGG
ATTCCTATCCGTATCACACGCTGTACGTCTACCAGGTTTCCGGGGAGTTC
GCTATGCTGTATCATGCCGCCAAGGCGGGAGCCTTTGACCTCAAGGATGC
CGTGCTGGAGGCCATGAAGGGCTTTCGACGAGCTGGTGCCGATTGCATCA
TCACCTACTACACACCCTTTCTGCTGGACATTATCGGAAAGGTCAAGGCA
AGCTTTCTAGACCAT

BO11871.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
Pbgs-RB 984 CG10335-PB 1..981 17..997 4905 100 Plus
Pbgs-RA 984 CG10335-PA 1..981 17..997 4905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
Pbgs-RB 1894 CG10335-RB 71..1051 17..997 4905 100 Plus
Pbgs-RA 1378 CG10335-RA 71..1051 17..997 4905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12270295..12271275 997..17 4905 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:24:03 has no hits.

BO11871.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:26 Download gff for BO11871.complete
Subject Subject Range Query Range Percent Splice Strand
Pbgs-RA 1..984 17..1001 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:30 Download gff for BO11871.complete
Subject Subject Range Query Range Percent Splice Strand
Pbgs-RA 56..1039 17..1001 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:14:05 Download gff for BO11871.complete
Subject Subject Range Query Range Percent Splice Strand
Pbgs-RA 71..1051 17..999 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:26 Download gff for BO11871.complete
Subject Subject Range Query Range Percent Splice Strand
Pbgs-RA 56..1039 17..1001 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:53 Download gff for BO11871.complete
Subject Subject Range Query Range Percent Splice Strand
Pbgs-RA 71..1051 17..999 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:53 Download gff for BO11871.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12270293..12271275 17..999 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:14:05 Download gff for BO11871.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12263393..12264375 17..999 99   Minus

BO11871.pep Sequence

Translation from 16 to 1015

> BO11871.pep
MERKLHSGMHHATLRQLQESGCEIAPHNLMYPVFIVSNDDDVQPIASMPG
ISRFGLNRLKEHLEPLVAKGLSSVLLFGVVDPDMKDEQASNADSAKNPVV
LALPKLREWFPDLLIACDVCICPYSSHGHCGLLGETGLENGPSIKRIAEI
AVAYAKAGAHIVAPSDMMDNRVKAIKQALIDAQMNSVSLLAYSAKFTSNF
YGPFREAAQSAPKFGDRRCYQLPSGSRSLAMRAIQRDVAEGADMLMVKPG
MPYLDILRSTKDSYPYHTLYVYQVSGEFAMLYHAAKAGAFDLKDAVLEAM
KGFRRAGADCIITYYTPFLLDIIGKVKASFLDH

BO11871.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
Pbgs-PB 327 CG10335-PB 1..327 1..327 1697 100 Plus
Pbgs-PA 327 CG10335-PA 1..327 1..327 1697 100 Plus