Clone BO11875 Report

Search the DGRC for BO11875

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:118
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptDim1-RA
Protein status:BO11875.pep: validated full length
Sequenced Size:460

Clone Sequence Records

BO11875.5prime Sequence

458 bp (457 high quality bases) assembled on 2006-04-19

> BO11875.5prime
GAAGTTATCAGTCGACATGTCGTATATGCTCCCTCATTTGCACAATGGCT
GGCAGGTGGACCAGGCCATTCTCTCCGAGGAGGACCGAGTAGTTGTAATA
CGTTTCGGTCACGATTGGGACCCCGCCTGCATGAAAATGGATGAGGTCAT
GTACAGCATCGCCGAGAAGGTGAAGAACTTTGCTGTCATCTATTTGGTGG
ACATTACCGAGGTGCCGGACTTCAACAAGATGTACGAGTTGTACGATCCT
TGCACGGTGATGTTCTTCTTCCGCAACAAGCACATCATGATCGATTTGGG
CACGGGCAACAACAACAAGATCAACTGGCCACTGGAGGACAAGCAGGAGA
TGATCGACATTGTGGAAACGGTGTATCGAGGTGCCCGTAAGGGCCGTGGT
CTGGTAGTCTCGCCCAAGGACTACTCTACCAAGTACAGATACGCAAGCTT
TCTAGACC

BO11875.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3058-PA 429 CG3058-RA 1..426 17..442 2130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:13:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dim1-RA 606 CG3058-RA 87..512 17..442 2130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:13:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4403514..4403861 95..442 1740 100 Plus
2L 23513712 2L 4403337..4403416 17..96 400 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:13:40 has no hits.

BO11875.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:21 Download gff for BO11875.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3058-PA 1..429 17..446 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:13 Download gff for BO11875.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3058-PA 1..429 17..446 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:51:57 Download gff for BO11875.5prime
Subject Subject Range Query Range Percent Splice Strand
Dim1-RA 83..516 9..447 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:56:56 Download gff for BO11875.5prime
Subject Subject Range Query Range Percent Splice Strand
Dim1-RA 83..516 9..447 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:56:56 Download gff for BO11875.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4403336..4403414 16..94 98 -> Plus
2L 4403514..4403865 95..447 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:51:57 Download gff for BO11875.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4403336..4403414 16..94 98 -> Plus
arm_2L 4403514..4403865 95..447 99   Plus

BO11875.3prime Sequence

458 bp (457 high quality bases) assembled on 2006-04-19

> BO11875.3prime
ATGGTCTAGAAAGCTTGCGTATCTGTACTTGGTAGAGTAGTCCTTGGGCG
AGACTACCAGACCACGGCCCTTACGGGCACCTCGATACACCGTTTCCACA
ATGTCGATCATCTCCTGCTTGTCCTCCAGTGGCCAGTTGATCTTGTTGTT
GTTGCCCGTGCCCAAATCGATCATGATGTGCTTGTTGCGGAAGAAGAACA
TCACCGTGCAAGGATCGTACAACTCGTACATCTTGTTGAAGTCCGGCACC
TCGGTAATGTCCACCAAATAGATGACAGCAAAGTTCTTCACCTTCTCGGC
GATGCTGTACATGACCTCATCCATTTTCATGCAGGCGGGGTCCCAATCGT
GACCGAAACGTATTACAACTACTCGGTCCTCCTCGGAGAGAATGGCCTGG
TCCACCTGCCAGCCATTGTGCAAATGAGGGAGCATATACGACATGTCGAC
TGATAACT

BO11875.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3058-PA 429 CG3058-RA 1..426 444..19 2130 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dim1-RA 606 CG3058-RA 87..512 444..19 2130 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:58:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4403514..4403861 366..19 1740 100 Minus
2L 23513712 2L 4403337..4403416 444..365 400 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:58:10 has no hits.

BO11875.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:20 Download gff for BO11875.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3058-PA 1..429 15..444 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:12 Download gff for BO11875.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3058-PA 1..429 15..444 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-14 15:00:30 Download gff for BO11875.3prime
Subject Subject Range Query Range Percent Splice Strand
Dim1-RA 83..516 14..452 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:47 Download gff for BO11875.3prime
Subject Subject Range Query Range Percent Splice Strand
Dim1-RA 83..516 14..452 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:47 Download gff for BO11875.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 4403333..4403414 367..452 95 -> Minus
2L 4403514..4403865 14..366 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-14 15:00:30 Download gff for BO11875.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4403333..4403414 367..452 95 -> Minus
arm_2L 4403514..4403865 14..366 99   Minus

BO11875.complete Sequence

460 bp assembled on 2006-10-11

GenBank Submission: FJ632228

> BO11875.complete
GAAGTTATCAGTCGACATGTCGTATATGCTCCCTCATTTGCACAATGGCT
GGCAGGTGGACCAGGCCATTCTCTCCGAGGAGGACCGAGTAGTTGTAATA
CGTTTCGGTCACGATTGGGACCCCGCCTGCATGAAAATGGATGAGGTCAT
GTACAGCATCGCCGAGAAGGTGAAGAACTTTGCTGTCATCTATTTGGTGG
ACATTACCGAGGTGCCGGACTTCAACAAGATGTACGAGTTGTACGATCCT
TGCACGGTGATGTTCTTCTTCCGCAACAAGCACATCATGATCGATTTGGG
CACGGGCAACAACAACAAGATCAACTGGCCACTGGAGGACAAGCAGGAGA
TGATCGACATTGTGGAAACGGTGTATCGAGGTGCCCGTAAGGGCCGTGGT
CTGGTAGTCTCGCCCAAGGACTACTCTACCAAGTACAGATACGCAAGCTT
TCTAGACCAT

BO11875.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:34:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dim1-RA 429 CG3058-PA 1..426 17..442 2130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dim1-RA 606 CG3058-RA 87..512 17..442 2130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4403514..4403861 95..442 1740 100 Plus
2L 23513712 2L 4403337..4403416 17..96 400 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:34:43 has no hits.

BO11875.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:03 Download gff for BO11875.complete
Subject Subject Range Query Range Percent Splice Strand
Dim1-RA 1..429 17..446 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:10:49 Download gff for BO11875.complete
Subject Subject Range Query Range Percent Splice Strand
Dim1-RA 79..512 9..447 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:08 Download gff for BO11875.complete
Subject Subject Range Query Range Percent Splice Strand
Dim1-RA 87..512 17..444 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:48:42 Download gff for BO11875.complete
Subject Subject Range Query Range Percent Splice Strand
Dim1-RA 87..512 17..444 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:48:42 Download gff for BO11875.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4403337..4403414 17..94 100 -> Plus
2L 4403514..4403861 95..444 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:08 Download gff for BO11875.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4403337..4403414 17..94 100 -> Plus
arm_2L 4403514..4403861 95..444 99   Plus

BO11875.pep Sequence

Translation from 16 to 460

> BO11875.pep
MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPACMKMDEVMYSIAE
KVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNN
KINWPLEDKQEMIDIVETVYRGARKGRGLVVSPKDYSTKYRYASFLDH

BO11875.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dim1-PA 142 CG3058-PA 1..142 1..142 769 100 Plus