Clone Sequence Records
BO11875.5prime Sequence
458 bp (457 high quality bases) assembled on 2006-04-19
> BO11875.5prime
GAAGTTATCAGTCGACATGTCGTATATGCTCCCTCATTTGCACAATGGCT
GGCAGGTGGACCAGGCCATTCTCTCCGAGGAGGACCGAGTAGTTGTAATA
CGTTTCGGTCACGATTGGGACCCCGCCTGCATGAAAATGGATGAGGTCAT
GTACAGCATCGCCGAGAAGGTGAAGAACTTTGCTGTCATCTATTTGGTGG
ACATTACCGAGGTGCCGGACTTCAACAAGATGTACGAGTTGTACGATCCT
TGCACGGTGATGTTCTTCTTCCGCAACAAGCACATCATGATCGATTTGGG
CACGGGCAACAACAACAAGATCAACTGGCCACTGGAGGACAAGCAGGAGA
TGATCGACATTGTGGAAACGGTGTATCGAGGTGCCCGTAAGGGCCGTGGT
CTGGTAGTCTCGCCCAAGGACTACTCTACCAAGTACAGATACGCAAGCTT
TCTAGACC
BO11875.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3058-PA | 429 | CG3058-RA | 1..426 | 17..442 | 2130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:13:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dim1-RA | 606 | CG3058-RA | 87..512 | 17..442 | 2130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:13:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4403514..4403861 | 95..442 | 1740 | 100 | Plus |
2L | 23513712 | 2L | 4403337..4403416 | 17..96 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:13:40 has no hits.
BO11875.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:21 Download gff for
BO11875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3058-PA | 1..429 | 17..446 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:13 Download gff for
BO11875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3058-PA | 1..429 | 17..446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:51:57 Download gff for
BO11875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dim1-RA | 83..516 | 9..447 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:56:56 Download gff for
BO11875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dim1-RA | 83..516 | 9..447 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:56:56 Download gff for
BO11875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4403336..4403414 | 16..94 | 98 | -> | Plus |
2L | 4403514..4403865 | 95..447 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:51:57 Download gff for
BO11875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4403336..4403414 | 16..94 | 98 | -> | Plus |
arm_2L | 4403514..4403865 | 95..447 | 99 | | Plus |
BO11875.3prime Sequence
458 bp (457 high quality bases) assembled on 2006-04-19
> BO11875.3prime
ATGGTCTAGAAAGCTTGCGTATCTGTACTTGGTAGAGTAGTCCTTGGGCG
AGACTACCAGACCACGGCCCTTACGGGCACCTCGATACACCGTTTCCACA
ATGTCGATCATCTCCTGCTTGTCCTCCAGTGGCCAGTTGATCTTGTTGTT
GTTGCCCGTGCCCAAATCGATCATGATGTGCTTGTTGCGGAAGAAGAACA
TCACCGTGCAAGGATCGTACAACTCGTACATCTTGTTGAAGTCCGGCACC
TCGGTAATGTCCACCAAATAGATGACAGCAAAGTTCTTCACCTTCTCGGC
GATGCTGTACATGACCTCATCCATTTTCATGCAGGCGGGGTCCCAATCGT
GACCGAAACGTATTACAACTACTCGGTCCTCCTCGGAGAGAATGGCCTGG
TCCACCTGCCAGCCATTGTGCAAATGAGGGAGCATATACGACATGTCGAC
TGATAACT
BO11875.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3058-PA | 429 | CG3058-RA | 1..426 | 444..19 | 2130 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:58:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dim1-RA | 606 | CG3058-RA | 87..512 | 444..19 | 2130 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:58:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4403514..4403861 | 366..19 | 1740 | 100 | Minus |
2L | 23513712 | 2L | 4403337..4403416 | 444..365 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:58:10 has no hits.
BO11875.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:20 Download gff for
BO11875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3058-PA | 1..429 | 15..444 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:12 Download gff for
BO11875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3058-PA | 1..429 | 15..444 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-14 15:00:30 Download gff for
BO11875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dim1-RA | 83..516 | 14..452 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:47 Download gff for
BO11875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dim1-RA | 83..516 | 14..452 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:47 Download gff for
BO11875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4403333..4403414 | 367..452 | 95 | -> | Minus |
2L | 4403514..4403865 | 14..366 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-14 15:00:30 Download gff for
BO11875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4403333..4403414 | 367..452 | 95 | -> | Minus |
arm_2L | 4403514..4403865 | 14..366 | 99 | | Minus |
BO11875.complete Sequence
460 bp assembled on 2006-10-11
GenBank Submission: FJ632228
> BO11875.complete
GAAGTTATCAGTCGACATGTCGTATATGCTCCCTCATTTGCACAATGGCT
GGCAGGTGGACCAGGCCATTCTCTCCGAGGAGGACCGAGTAGTTGTAATA
CGTTTCGGTCACGATTGGGACCCCGCCTGCATGAAAATGGATGAGGTCAT
GTACAGCATCGCCGAGAAGGTGAAGAACTTTGCTGTCATCTATTTGGTGG
ACATTACCGAGGTGCCGGACTTCAACAAGATGTACGAGTTGTACGATCCT
TGCACGGTGATGTTCTTCTTCCGCAACAAGCACATCATGATCGATTTGGG
CACGGGCAACAACAACAAGATCAACTGGCCACTGGAGGACAAGCAGGAGA
TGATCGACATTGTGGAAACGGTGTATCGAGGTGCCCGTAAGGGCCGTGGT
CTGGTAGTCTCGCCCAAGGACTACTCTACCAAGTACAGATACGCAAGCTT
TCTAGACCAT
BO11875.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:34:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dim1-RA | 429 | CG3058-PA | 1..426 | 17..442 | 2130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:34:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dim1-RA | 606 | CG3058-RA | 87..512 | 17..442 | 2130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:34:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4403514..4403861 | 95..442 | 1740 | 100 | Plus |
2L | 23513712 | 2L | 4403337..4403416 | 17..96 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:34:43 has no hits.
BO11875.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:03 Download gff for
BO11875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dim1-RA | 1..429 | 17..446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:10:49 Download gff for
BO11875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dim1-RA | 79..512 | 9..447 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:08 Download gff for
BO11875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dim1-RA | 87..512 | 17..444 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:48:42 Download gff for
BO11875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dim1-RA | 87..512 | 17..444 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:48:42 Download gff for
BO11875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4403337..4403414 | 17..94 | 100 | -> | Plus |
2L | 4403514..4403861 | 95..444 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:08 Download gff for
BO11875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4403337..4403414 | 17..94 | 100 | -> | Plus |
arm_2L | 4403514..4403861 | 95..444 | 99 | | Plus |
BO11875.pep Sequence
Translation from 16 to 460
> BO11875.pep
MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPACMKMDEVMYSIAE
KVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNN
KINWPLEDKQEMIDIVETVYRGARKGRGLVVSPKDYSTKYRYASFLDH
BO11875.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dim1-PA | 142 | CG3058-PA | 1..142 | 1..142 | 769 | 100 | Plus |