Clone Sequence Records
BO11876.5prime Sequence
479 bp (478 high quality bases) assembled on 2006-04-19
> BO11876.5prime
GAAGTTATCAGTCGACATGGCTCGTTACTTTAAAGAACAGGACATTGATG
AGTTCCGTGAGTGTTTTTATCTGTTCGCCCGTTCGGGCCAAATCAACAAT
TTGGACGAACTAACCGTTATTATGCGTTCTTTGGGTCTTTCGCCGACGAT
CCAAGAACTGGTTTCCTATCTGAAGCAAAAGAATGGGAAAATGAGCTTCG
CCGACTTCCTGGACATCATGCATCAGCACTCCAAGGTGGAGAGTTTGCCG
GACGAGGTCATTGCCGCCTTTAAAGCGGCCGATCCGCAGAATAAGGGCAC
CATCTCGGCTAGACAGCTGCGTAATCTACTTCAAAACTGGGGAGAGGGCC
TGTCCATGCGCGAAGTGGACAACATCTTCCGGGAGGCCAATGTGAACAAC
AATAGCACTGTGCGGTATGCAGACTTTGTCAAGATTGCATGCGCCCCAGT
TCCCGACTACTATGCAAGCTTTCTAGACC
BO11876.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17272-PA | 450 | CG17272-RA | 1..447 | 17..463 | 2210 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:41:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17272-RA | 670 | CG17272-RA | 145..591 | 17..463 | 2220 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:40:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20823392..20823739 | 463..116 | 1725 | 99.7 | Minus |
3R | 32079331 | 3R | 20823801..20823868 | 117..50 | 340 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 16:40:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gtwin | 7411 | gtwin GTWIN 7411bp | 1664..1731 | 416..348 | 117 | 65.2 | Minus |
BO11876.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:23 Download gff for
BO11876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17272-PA | 1..450 | 17..464 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:16 Download gff for
BO11876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17272-PA | 1..450 | 17..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:45:58 Download gff for
BO11876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17272-RA | 145..591 | 17..463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:58 Download gff for
BO11876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17272-RA | 145..591 | 17..463 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:58 Download gff for
BO11876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20823392..20823739 | 116..463 | 99 | <- | Minus |
3R | 20823803..20823867 | 51..115 | 100 | <- | Minus |
3R | 20823935..20823968 | 16..50 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:45:58 Download gff for
BO11876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16649114..16649461 | 116..463 | 99 | <- | Minus |
arm_3R | 16649525..16649589 | 51..115 | 100 | <- | Minus |
arm_3R | 16649657..16649690 | 16..50 | 97 | | Minus |
BO11876.3prime Sequence
479 bp (478 high quality bases) assembled on 2006-04-19
> BO11876.3prime
ATGGTCTAGAAAGCTTGCATAGTAGTCGGGAACTGGGGCGCATGCAATCT
TGACAAAGTCTGCATACCGCACAGTGCTATTGTTGTTCACATTGGCCTCC
CGGAAGATGTTGTCCACTTCGCGCATGGACAGGCCCTCTCCCCAGTTTTG
AAGTAGATTACGCAGCTGTCTAGCCGAGATGGTGCCCTTATTCTGCGGAT
CGGCCGCTTTAAAGGCGGCAATGACCTCGTCCGGCAAACTCTCCACCTTG
GAGTGCTGATGCATGATGTCCAGGAAGTCGGCGAAGCTCATTTTCCCATT
CTTTTGCTTCAGATAGGAAACCAGTTCTTGGATCGTCGGCGAAAGACCCA
AAGAACGCATAATAACGGTTAGTTCGTCCAAATTGTTGATTTGGCCCGAA
CGGGCGAACAGATAAAAACACTCACGGAACTCATCAATGTCCTGTTCTTT
AAAGTAACGAGCCATGTCGACTGATAACT
BO11876.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17272-PA | 450 | CG17272-RA | 1..447 | 465..19 | 2210 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:41:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17272-RA | 670 | CG17272-RA | 145..591 | 465..19 | 2220 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:41:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20823392..20823739 | 19..366 | 1725 | 99.7 | Plus |
3R | 32079331 | 3R | 20823801..20823868 | 365..432 | 340 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 22:41:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gtwin | 7411 | gtwin GTWIN 7411bp | 1664..1731 | 66..134 | 117 | 65.2 | Plus |
BO11876.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:22 Download gff for
BO11876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17272-PA | 1..450 | 18..465 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:15 Download gff for
BO11876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17272-PA | 1..450 | 18..465 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:57:36 Download gff for
BO11876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17272-RA | 145..591 | 19..465 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:04:28 Download gff for
BO11876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17272-RA | 145..591 | 19..465 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:04:28 Download gff for
BO11876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20823392..20823739 | 19..366 | 99 | <- | Plus |
3R | 20823803..20823867 | 367..431 | 100 | <- | Plus |
3R | 20823935..20823968 | 432..466 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:57:36 Download gff for
BO11876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16649114..16649461 | 19..366 | 99 | <- | Plus |
arm_3R | 16649525..16649589 | 367..431 | 100 | <- | Plus |
arm_3R | 16649657..16649690 | 432..466 | 97 | | Plus |
BO11876.complete Sequence
481 bp assembled on 2006-10-11
GenBank Submission: FJ632229
> BO11876.complete
GAAGTTATCAGTCGACATGGCTCGTTACTTTAAAGAACAGGACATTGATG
AGTTCCGTGAGTGTTTTTATCTGTTCGCCCGTTCGGGCCAAATCAACAAT
TTGGACGAACTAACCGTTATTATGCGTTCTTTGGGTCTTTCGCCGACGAT
CCAAGAACTGGTTTCCTATCTGAAGCAAAAGAATGGGAAAATGAGCTTCG
CCGACTTCCTGGACATCATGCATCAGCACTCCAAGGTGGAGAGTTTGCCG
GACGAGGTCATTGCCGCCTTTAAAGCGGCCGATCCGCAGAATAAGGGCAC
CATCTCGGCTAGACAGCTGCGTAATCTACTTCAAAACTGGGGAGAGGGCC
TGTCCATGCGCGAAGTGGACAACATCTTCCGGGAGGCCAATGTGAACAAC
AATAGCACTGTGCGGTATGCAGACTTTGTCAAGATTGCATGCGCCCCAGT
TCCCGACTACTATGCAAGCTTTCTAGACCAT
BO11876.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:41:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17272-RA | 450 | CG17272-PA | 1..447 | 17..463 | 2220 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:41:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17272-RA | 670 | CG17272-RA | 145..591 | 17..463 | 2220 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:41:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20823392..20823739 | 463..116 | 1725 | 99.7 | Minus |
3R | 32079331 | 3R | 20823801..20823868 | 117..50 | 340 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:41:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gtwin | 7411 | gtwin GTWIN 7411bp | 1664..1731 | 416..348 | 117 | 65.2 | Minus |
BO11876.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:19 Download gff for
BO11876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17272-RA | 1..450 | 17..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:01:02 Download gff for
BO11876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17272-RA | 135..581 | 17..463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:16 Download gff for
BO11876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17272-RA | 145..591 | 17..465 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:19 Download gff for
BO11876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17272-RA | 135..581 | 17..463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:47 Download gff for
BO11876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17272-RA | 145..591 | 17..465 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:47 Download gff for
BO11876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20823803..20823867 | 51..115 | 100 | <- | Minus |
3R | 20823935..20823967 | 17..50 | 97 | | Minus |
3R | 20823390..20823739 | 116..465 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:16 Download gff for
BO11876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16649112..16649461 | 116..465 | 99 | <- | Minus |
arm_3R | 16649525..16649589 | 51..115 | 100 | <- | Minus |
arm_3R | 16649657..16649689 | 17..50 | 97 | | Minus |
BO11876.pep Sequence
Translation from 16 to 481
> BO11876.pep
MARYFKEQDIDEFRECFYLFARSGQINNLDELTVIMRSLGLSPTIQELVS
YLKQKNGKMSFADFLDIMHQHSKVESLPDEVIAAFKAADPQNKGTISARQ
LRNLLQNWGEGLSMREVDNIFREANVNNNSTVRYADFVKIACAPVPDYYA
SFLDH
BO11876.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17272-PA | 149 | CG17272-PA | 1..149 | 1..149 | 770 | 100 | Plus |
Cam-PD | 149 | CG8472-PD | 1..143 | 1..138 | 219 | 37.1 | Plus |
Cam-PC | 149 | CG8472-PC | 1..143 | 1..138 | 219 | 37.1 | Plus |
Cam-PE | 149 | CG8472-PE | 1..143 | 1..138 | 219 | 37.1 | Plus |
Cam-PB | 149 | CG8472-PB | 1..143 | 1..138 | 219 | 37.1 | Plus |