Clone BO11876 Report

Search the DGRC for BO11876

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:118
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG17272-RA
Protein status:BO11876.pep: validated full length
Sequenced Size:481

Clone Sequence Records

BO11876.5prime Sequence

479 bp (478 high quality bases) assembled on 2006-04-19

> BO11876.5prime
GAAGTTATCAGTCGACATGGCTCGTTACTTTAAAGAACAGGACATTGATG
AGTTCCGTGAGTGTTTTTATCTGTTCGCCCGTTCGGGCCAAATCAACAAT
TTGGACGAACTAACCGTTATTATGCGTTCTTTGGGTCTTTCGCCGACGAT
CCAAGAACTGGTTTCCTATCTGAAGCAAAAGAATGGGAAAATGAGCTTCG
CCGACTTCCTGGACATCATGCATCAGCACTCCAAGGTGGAGAGTTTGCCG
GACGAGGTCATTGCCGCCTTTAAAGCGGCCGATCCGCAGAATAAGGGCAC
CATCTCGGCTAGACAGCTGCGTAATCTACTTCAAAACTGGGGAGAGGGCC
TGTCCATGCGCGAAGTGGACAACATCTTCCGGGAGGCCAATGTGAACAAC
AATAGCACTGTGCGGTATGCAGACTTTGTCAAGATTGCATGCGCCCCAGT
TCCCGACTACTATGCAAGCTTTCTAGACC

BO11876.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG17272-PA 450 CG17272-RA 1..447 17..463 2210 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:41:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG17272-RA 670 CG17272-RA 145..591 17..463 2220 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:40:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20823392..20823739 463..116 1725 99.7 Minus
3R 32079331 3R 20823801..20823868 117..50 340 100 Minus
Blast to na_te.dros performed 2015-02-11 16:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
gtwin 7411 gtwin GTWIN 7411bp 1664..1731 416..348 117 65.2 Minus

BO11876.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:23 Download gff for BO11876.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17272-PA 1..450 17..464 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:16 Download gff for BO11876.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17272-PA 1..450 17..464 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:45:58 Download gff for BO11876.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17272-RA 145..591 17..463 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:58 Download gff for BO11876.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17272-RA 145..591 17..463 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:58 Download gff for BO11876.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20823392..20823739 116..463 99 <- Minus
3R 20823803..20823867 51..115 100 <- Minus
3R 20823935..20823968 16..50 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:45:58 Download gff for BO11876.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16649114..16649461 116..463 99 <- Minus
arm_3R 16649525..16649589 51..115 100 <- Minus
arm_3R 16649657..16649690 16..50 97   Minus

BO11876.3prime Sequence

479 bp (478 high quality bases) assembled on 2006-04-19

> BO11876.3prime
ATGGTCTAGAAAGCTTGCATAGTAGTCGGGAACTGGGGCGCATGCAATCT
TGACAAAGTCTGCATACCGCACAGTGCTATTGTTGTTCACATTGGCCTCC
CGGAAGATGTTGTCCACTTCGCGCATGGACAGGCCCTCTCCCCAGTTTTG
AAGTAGATTACGCAGCTGTCTAGCCGAGATGGTGCCCTTATTCTGCGGAT
CGGCCGCTTTAAAGGCGGCAATGACCTCGTCCGGCAAACTCTCCACCTTG
GAGTGCTGATGCATGATGTCCAGGAAGTCGGCGAAGCTCATTTTCCCATT
CTTTTGCTTCAGATAGGAAACCAGTTCTTGGATCGTCGGCGAAAGACCCA
AAGAACGCATAATAACGGTTAGTTCGTCCAAATTGTTGATTTGGCCCGAA
CGGGCGAACAGATAAAAACACTCACGGAACTCATCAATGTCCTGTTCTTT
AAAGTAACGAGCCATGTCGACTGATAACT

BO11876.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG17272-PA 450 CG17272-RA 1..447 465..19 2210 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG17272-RA 670 CG17272-RA 145..591 465..19 2220 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20823392..20823739 19..366 1725 99.7 Plus
3R 32079331 3R 20823801..20823868 365..432 340 100 Plus
Blast to na_te.dros performed 2015-02-10 22:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
gtwin 7411 gtwin GTWIN 7411bp 1664..1731 66..134 117 65.2 Plus

BO11876.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:22 Download gff for BO11876.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17272-PA 1..450 18..465 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:15 Download gff for BO11876.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17272-PA 1..450 18..465 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:57:36 Download gff for BO11876.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17272-RA 145..591 19..465 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:04:28 Download gff for BO11876.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17272-RA 145..591 19..465 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:04:28 Download gff for BO11876.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20823392..20823739 19..366 99 <- Plus
3R 20823803..20823867 367..431 100 <- Plus
3R 20823935..20823968 432..466 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:57:36 Download gff for BO11876.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16649114..16649461 19..366 99 <- Plus
arm_3R 16649525..16649589 367..431 100 <- Plus
arm_3R 16649657..16649690 432..466 97   Plus

BO11876.complete Sequence

481 bp assembled on 2006-10-11

GenBank Submission: FJ632229

> BO11876.complete
GAAGTTATCAGTCGACATGGCTCGTTACTTTAAAGAACAGGACATTGATG
AGTTCCGTGAGTGTTTTTATCTGTTCGCCCGTTCGGGCCAAATCAACAAT
TTGGACGAACTAACCGTTATTATGCGTTCTTTGGGTCTTTCGCCGACGAT
CCAAGAACTGGTTTCCTATCTGAAGCAAAAGAATGGGAAAATGAGCTTCG
CCGACTTCCTGGACATCATGCATCAGCACTCCAAGGTGGAGAGTTTGCCG
GACGAGGTCATTGCCGCCTTTAAAGCGGCCGATCCGCAGAATAAGGGCAC
CATCTCGGCTAGACAGCTGCGTAATCTACTTCAAAACTGGGGAGAGGGCC
TGTCCATGCGCGAAGTGGACAACATCTTCCGGGAGGCCAATGTGAACAAC
AATAGCACTGTGCGGTATGCAGACTTTGTCAAGATTGCATGCGCCCCAGT
TCCCGACTACTATGCAAGCTTTCTAGACCAT

BO11876.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:41:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG17272-RA 450 CG17272-PA 1..447 17..463 2220 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:41:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG17272-RA 670 CG17272-RA 145..591 17..463 2220 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20823392..20823739 463..116 1725 99.7 Minus
3R 32079331 3R 20823801..20823868 117..50 340 100 Minus
Blast to na_te.dros performed 2014-11-27 14:41:43
Subject Length Description Subject Range Query Range Score Percent Strand
gtwin 7411 gtwin GTWIN 7411bp 1664..1731 416..348 117 65.2 Minus

BO11876.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:19 Download gff for BO11876.complete
Subject Subject Range Query Range Percent Splice Strand
CG17272-RA 1..450 17..464 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:01:02 Download gff for BO11876.complete
Subject Subject Range Query Range Percent Splice Strand
CG17272-RA 135..581 17..463 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:16 Download gff for BO11876.complete
Subject Subject Range Query Range Percent Splice Strand
CG17272-RA 145..591 17..465 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:19 Download gff for BO11876.complete
Subject Subject Range Query Range Percent Splice Strand
CG17272-RA 135..581 17..463 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:47 Download gff for BO11876.complete
Subject Subject Range Query Range Percent Splice Strand
CG17272-RA 145..591 17..465 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:47 Download gff for BO11876.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20823803..20823867 51..115 100 <- Minus
3R 20823935..20823967 17..50 97   Minus
3R 20823390..20823739 116..465 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:16 Download gff for BO11876.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16649112..16649461 116..465 99 <- Minus
arm_3R 16649525..16649589 51..115 100 <- Minus
arm_3R 16649657..16649689 17..50 97   Minus

BO11876.pep Sequence

Translation from 16 to 481

> BO11876.pep
MARYFKEQDIDEFRECFYLFARSGQINNLDELTVIMRSLGLSPTIQELVS
YLKQKNGKMSFADFLDIMHQHSKVESLPDEVIAAFKAADPQNKGTISARQ
LRNLLQNWGEGLSMREVDNIFREANVNNNSTVRYADFVKIACAPVPDYYA
SFLDH

BO11876.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG17272-PA 149 CG17272-PA 1..149 1..149 770 100 Plus
Cam-PD 149 CG8472-PD 1..143 1..138 219 37.1 Plus
Cam-PC 149 CG8472-PC 1..143 1..138 219 37.1 Plus
Cam-PE 149 CG8472-PE 1..143 1..138 219 37.1 Plus
Cam-PB 149 CG8472-PB 1..143 1..138 219 37.1 Plus