Clone BO11879 Report

Search the DGRC for BO11879

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:118
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptOsi20-RA
Protein status:BO11879.pep: validated full length
Sequenced Size:874

Clone Sequence Records

BO11879.3prime Sequence

804 bp (779 high quality bases) assembled on 2006-04-19

> BO11879.3prime
ATGGTCTAGAAAGCTTGCGGAGGACGAGCTGTAGCTGGACGAAGAACCCG
AGGATCCCGACGAGGATCCCGAGGAGTAGGACGACGAGCTGCTAGGATGG
TACGAGCTGTAGGCCAGGTTCTGCGAGTCCCAACGGGCATAGGGACCTCC
GCTCATGGGCTCCCAGCTGCTGGGATCGTAGGATGAGGCGGTGGTGCTGG
GCACTCCGTATTCGCTGGCCGGAACTGGGGCGGGCATGGGCACCATGTTC
ATCTTCATGCCTCCCAACTTCTGGATAAGGTTGTAGATCAGGAAGCCCAG
CACCAGCTTGATGGCAATCTTGGACAGAATCAGAGCCTTGGTGGCCTTCA
GACCGATCAGAGCCAGCAAGATGGGCATGATCACCTTCAGCTTGAACTTC
ATCAGCAGCAGCAGGGGCAGGAACAGCTTGTCCTTGTTCTTCTTCTCAGC
GCGACCCTCATCCTTGGGCAACTCCAGATCAAAACCGCGATCCGAGCGAT
AGGTCACCACGGAACCAGCGAAGAAGGTCTGTGGCAGCTGCAACCTCATC
TCGTTGGTGTTCAGAATGCGGCCCAGGCGGTCCACAATGACCTTGTCGAT
TACATCGTCACCCAGGGCGCGTCCGCTGACCTCCTCCTCCACATTGGCTA
CCGTGTCCAGGTAGGTGAGCACCTTCTCCTTCAGGCAATGCATCGCATTG
GCATGGAAGCACTTATCCACAATTGTCGAGATCAGCTCGTCGGAGCTGTG
GATCCGCGGGGTCACCGCGTTCTCGATGGCAGCACCGGACACGGATGTGG
AGGC

BO11879.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG15188-PA 843 Osi20-RA 55..840 804..19 3930 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
Osi20-RA 1264 CG15188-RA 148..933 804..19 3930 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 18:42:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6340656..6341093 456..19 2190 100 Minus
3R 32079331 3R 6340242..6340593 804..453 1760 100 Minus
Blast to na_te.dros performed 2015-02-06 18:42:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1507..1581 354..427 138 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2407..2478 356..427 126 63.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2300..2370 357..427 121 63.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2559..2655 330..427 118 59.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2375 364..429 114 63.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6800 364..427 113 64.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2455..2523 356..427 110 63.9 Plus

BO11879.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:28 Download gff for BO11879.3prime
Subject Subject Range Query Range Percent Splice Strand
Osi20-PA 55..843 15..804 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:24 Download gff for BO11879.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15188-PA 55..843 15..804 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:41:34 Download gff for BO11879.3prime
Subject Subject Range Query Range Percent Splice Strand
Osi20-RA 148..936 15..804 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:46:25 Download gff for BO11879.3prime
Subject Subject Range Query Range Percent Splice Strand
Osi20-RA 148..936 15..804 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:46:25 Download gff for BO11879.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6340242..6340590 456..804 100 -> Minus
3R 6340657..6341096 15..455 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:41:34 Download gff for BO11879.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2165964..2166312 456..804 100 -> Minus
arm_3R 2166379..2166818 15..455 99   Minus

BO11879.5prime Sequence

781 bp (751 high quality bases) assembled on 2006-04-19

> BO11879.5prime
GAAGTTATCAGTCGACATGGCTTTCCGCTCCACGTCCTTGCTCGCGTTCG
GTTGTGCGCTGCTGCTGGTGGCCTCCACATCCGTGTCCGGTGCTGCCATC
GAGAACGCGGTGACCCCGCGGATCCACAGCTCCGACGAGCTGATCTCGAC
AATTGTGGATAAGTGCTTCCATGCCAATGCGATGCATTGCCTGAAGGAGA
AGGTGCTCACCTACCTGGACACGGTAGCCAATGTGGAGGAGGAGGTCAGC
GGACGCGCCCTGGGTGACGATGTAATCGACAAGGTCATTGTGGACCGCCT
GGGCCGCATTCTGAACACCAACGAGATGAGGTTGCAGCTGCCACAGACCT
TCTTCGCTGGTTCCGTGGTGACCTATCGCTCGGATCGCGGTTTTGATCTG
GAGTTGCCCAAGGATGAGGGTCGCGCTGAGAAGAAGAACAAGGACAAGCT
GTTCCTGCCCCTGCTGCTGCTGATGAAGTTCAAGCTGAAGGTGATCATGC
CCATCTTGCTGGCTCTGATCGGTCTGAAGGCCACCAAGGCTCTGATTCTG
TCCAAGATTGCCATCAAGCTGGTGCTGGGCTTCCTGATCTACAACCTTAT
CCAGAAGTTGGGAGGCATGAAGATGAACATGGTGCCCATGCCCGCCCCAG
TTCCGGCCAGCGAATACGGAGTGCCCAGCACCACCGCCTCATCCTACGAT
CCCAGCAGCTGGGAGCCCATGAGCGGAGGTCCCTATGCCCGTTGGGACTC
GCAGAACCTGGCCTACAGCTCGTACCATCCT

BO11879.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG15188-PA 843 Osi20-RA 1..765 17..781 3825 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
Osi20-RA 1264 CG15188-RA 94..858 17..781 3825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6340188..6340593 17..422 2030 100 Plus
3R 32079331 3R 6340656..6341018 419..781 1815 100 Plus
Blast to na_te.dros performed 2015-02-11 16:48:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1507..1581 521..448 138 66.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2407..2478 519..448 126 63.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2300..2370 518..448 121 63.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2559..2655 545..448 118 59.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2375 511..446 114 63.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6800 511..448 113 64.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2455..2523 519..448 110 63.9 Minus

BO11879.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:29 Download gff for BO11879.5prime
Subject Subject Range Query Range Percent Splice Strand
Osi20-PA 1..765 17..781 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:26 Download gff for BO11879.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15188-PA 1..765 17..781 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:46:59 Download gff for BO11879.5prime
Subject Subject Range Query Range Percent Splice Strand
Osi20-RA 90..858 9..781 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:21:31 Download gff for BO11879.5prime
Subject Subject Range Query Range Percent Splice Strand
Osi20-RA 90..858 9..781 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:21:31 Download gff for BO11879.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6340184..6340590 9..419 99 -> Plus
3R 6340657..6341018 420..781 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:46:59 Download gff for BO11879.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2165906..2166312 9..419 99 -> Plus
arm_3R 2166379..2166740 420..781 100   Plus

BO11879.complete Sequence

874 bp assembled on 2006-10-11

GenBank Submission: FJ632230

> BO11879.complete
GAAGTTATCAGTCGACATGGCTTTCCGCTCCACGTCCTTGCTCGCGTTCG
GTTGTGCGCTGCTGCTGGTGGCCTCCACATCCGTGTCCGGTGCTGCCATC
GAGAACGCGGTGACCCCGCGGATCCACAGCTCCGACGAGCTGATCTCGAC
AATTGTGGATAAGTGCTTCCATGCCAATGCGATGCATTGCCTGAAGGAGA
AGGTGCTCACCTACCTGGACACGGTAGCCAATGTGGAGGAGGAGGTCAGC
GGACGCGCCCTGGGTGACGATGTAATCGACAAGGTCATTGTGGACCGCCT
GGGCCGCATTCTGAACACCAACGAGATGAGGTTGCAGCTGCCACAGACCT
TCTTCGCTGGTTCCGTGGTGACCTATCGCTCGGATCGCGGTTTTGATCTG
GAGTTGCCCAAGGATGAGGGTCGCGCTGAGAAGAAGAACAAGGACAAGCT
GTTCCTGCCCCTGCTGCTGCTGATGAAGTTCAAGCTGAAGGTGATCATGC
CCATCTTGCTGGCTCTGATCGGTCTGAAGGCCACCAAGGCTCTGATTCTG
TCCAAGATTGCCATCAAGCTGGTGCTGGGCTTCCTGATCTACAACCTTAT
CCAGAAGTTGGGAGGCATGAAGATGAACATGGTGCCCATGCCCGCCCCAG
TTCCGGCCAGCGAATACGGAGTGCCCAGCACCACCGCCTCATCCTACGAT
CCCAGCAGCTGGGAGCCCATGAGCGGAGGTCCCTATGCCCGTTGGGACTC
GCAGAACCTGGCCTACAGCTCGTACCATCCTAGCAGCTCGTCGTCCTACT
CCTCGGGATCCTCGTCGGGATCCTCGGGTTCTTCGTCCAGCTACAGCTCG
TCCTCCGCAAGCTTTCTAGACCAT

BO11879.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:02:00
Subject Length Description Subject Range Query Range Score Percent Strand
Osi20-RA 843 CG15188-PA 1..840 17..856 4200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:01
Subject Length Description Subject Range Query Range Score Percent Strand
Osi20-RA 1264 CG15188-RA 94..933 17..856 4200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:01:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6340656..6341093 419..856 2190 100 Plus
3R 32079331 3R 6340188..6340593 17..422 2030 100 Plus
Blast to na_te.dros performed 2014-11-28 01:01:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1507..1581 521..448 138 66.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2407..2478 519..448 126 63.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2300..2370 518..448 121 63.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2559..2655 545..448 118 59.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2375 511..446 114 63.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6800 511..448 113 64.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2455..2523 519..448 110 63.9 Minus

BO11879.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:37 Download gff for BO11879.complete
Subject Subject Range Query Range Percent Splice Strand
Osi20-RA 1..843 17..860 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:11:29 Download gff for BO11879.complete
Subject Subject Range Query Range Percent Splice Strand
Osi20-RA 88..934 9..860 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:05:02 Download gff for BO11879.complete
Subject Subject Range Query Range Percent Splice Strand
Osi20-RA 94..933 17..858 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:37 Download gff for BO11879.complete
Subject Subject Range Query Range Percent Splice Strand
Osi20-RA 88..934 9..860 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:25 Download gff for BO11879.complete
Subject Subject Range Query Range Percent Splice Strand
Osi20-RA 94..933 17..858 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:25 Download gff for BO11879.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6340188..6340590 17..419 100 -> Plus
3R 6340657..6341093 420..858 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:05:02 Download gff for BO11879.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2165910..2166312 17..419 100 -> Plus
arm_3R 2166379..2166815 420..858 99   Plus

BO11879.pep Sequence

Translation from 16 to 874

> BO11879.pep
MAFRSTSLLAFGCALLLVASTSVSGAAIENAVTPRIHSSDELISTIVDKC
FHANAMHCLKEKVLTYLDTVANVEEEVSGRALGDDVIDKVIVDRLGRILN
TNEMRLQLPQTFFAGSVVTYRSDRGFDLELPKDEGRAEKKNKDKLFLPLL
LLMKFKLKVIMPILLALIGLKATKALILSKIAIKLVLGFLIYNLIQKLGG
MKMNMVPMPAPVPASEYGVPSTTASSYDPSSWEPMSGGPYARWDSQNLAY
SSYHPSSSSSYSSGSSSGSSGSSSSYSSSSASFLDH

BO11879.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:32
Subject Length Description Subject Range Query Range Score Percent Strand
Osi20-PA 280 CG15188-PA 1..280 1..280 1401 100 Plus
Osi9-PA 233 CG15592-PA 1..181 8..185 175 23.9 Plus
Osi7-PA 288 CG1153-PA 6..264 9..279 172 21.1 Plus