Clone Sequence Records
BO11879.3prime Sequence
804 bp (779 high quality bases) assembled on 2006-04-19
> BO11879.3prime
ATGGTCTAGAAAGCTTGCGGAGGACGAGCTGTAGCTGGACGAAGAACCCG
AGGATCCCGACGAGGATCCCGAGGAGTAGGACGACGAGCTGCTAGGATGG
TACGAGCTGTAGGCCAGGTTCTGCGAGTCCCAACGGGCATAGGGACCTCC
GCTCATGGGCTCCCAGCTGCTGGGATCGTAGGATGAGGCGGTGGTGCTGG
GCACTCCGTATTCGCTGGCCGGAACTGGGGCGGGCATGGGCACCATGTTC
ATCTTCATGCCTCCCAACTTCTGGATAAGGTTGTAGATCAGGAAGCCCAG
CACCAGCTTGATGGCAATCTTGGACAGAATCAGAGCCTTGGTGGCCTTCA
GACCGATCAGAGCCAGCAAGATGGGCATGATCACCTTCAGCTTGAACTTC
ATCAGCAGCAGCAGGGGCAGGAACAGCTTGTCCTTGTTCTTCTTCTCAGC
GCGACCCTCATCCTTGGGCAACTCCAGATCAAAACCGCGATCCGAGCGAT
AGGTCACCACGGAACCAGCGAAGAAGGTCTGTGGCAGCTGCAACCTCATC
TCGTTGGTGTTCAGAATGCGGCCCAGGCGGTCCACAATGACCTTGTCGAT
TACATCGTCACCCAGGGCGCGTCCGCTGACCTCCTCCTCCACATTGGCTA
CCGTGTCCAGGTAGGTGAGCACCTTCTCCTTCAGGCAATGCATCGCATTG
GCATGGAAGCACTTATCCACAATTGTCGAGATCAGCTCGTCGGAGCTGTG
GATCCGCGGGGTCACCGCGTTCTCGATGGCAGCACCGGACACGGATGTGG
AGGC
BO11879.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15188-PA | 843 | Osi20-RA | 55..840 | 804..19 | 3930 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:42:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi20-RA | 1264 | CG15188-RA | 148..933 | 804..19 | 3930 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 18:42:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6340656..6341093 | 456..19 | 2190 | 100 | Minus |
3R | 32079331 | 3R | 6340242..6340593 | 804..453 | 1760 | 100 | Minus |
Blast to na_te.dros performed 2015-02-06 18:42:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1507..1581 | 354..427 | 138 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2407..2478 | 356..427 | 126 | 63.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2300..2370 | 357..427 | 121 | 63.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2559..2655 | 330..427 | 118 | 59.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2375 | 364..429 | 114 | 63.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6800 | 364..427 | 113 | 64.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2455..2523 | 356..427 | 110 | 63.9 | Plus |
BO11879.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:28 Download gff for
BO11879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi20-PA | 55..843 | 15..804 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:24 Download gff for
BO11879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15188-PA | 55..843 | 15..804 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:41:34 Download gff for
BO11879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi20-RA | 148..936 | 15..804 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:46:25 Download gff for
BO11879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi20-RA | 148..936 | 15..804 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:46:25 Download gff for
BO11879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6340242..6340590 | 456..804 | 100 | -> | Minus |
3R | 6340657..6341096 | 15..455 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:41:34 Download gff for
BO11879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2165964..2166312 | 456..804 | 100 | -> | Minus |
arm_3R | 2166379..2166818 | 15..455 | 99 | | Minus |
BO11879.5prime Sequence
781 bp (751 high quality bases) assembled on 2006-04-19
> BO11879.5prime
GAAGTTATCAGTCGACATGGCTTTCCGCTCCACGTCCTTGCTCGCGTTCG
GTTGTGCGCTGCTGCTGGTGGCCTCCACATCCGTGTCCGGTGCTGCCATC
GAGAACGCGGTGACCCCGCGGATCCACAGCTCCGACGAGCTGATCTCGAC
AATTGTGGATAAGTGCTTCCATGCCAATGCGATGCATTGCCTGAAGGAGA
AGGTGCTCACCTACCTGGACACGGTAGCCAATGTGGAGGAGGAGGTCAGC
GGACGCGCCCTGGGTGACGATGTAATCGACAAGGTCATTGTGGACCGCCT
GGGCCGCATTCTGAACACCAACGAGATGAGGTTGCAGCTGCCACAGACCT
TCTTCGCTGGTTCCGTGGTGACCTATCGCTCGGATCGCGGTTTTGATCTG
GAGTTGCCCAAGGATGAGGGTCGCGCTGAGAAGAAGAACAAGGACAAGCT
GTTCCTGCCCCTGCTGCTGCTGATGAAGTTCAAGCTGAAGGTGATCATGC
CCATCTTGCTGGCTCTGATCGGTCTGAAGGCCACCAAGGCTCTGATTCTG
TCCAAGATTGCCATCAAGCTGGTGCTGGGCTTCCTGATCTACAACCTTAT
CCAGAAGTTGGGAGGCATGAAGATGAACATGGTGCCCATGCCCGCCCCAG
TTCCGGCCAGCGAATACGGAGTGCCCAGCACCACCGCCTCATCCTACGAT
CCCAGCAGCTGGGAGCCCATGAGCGGAGGTCCCTATGCCCGTTGGGACTC
GCAGAACCTGGCCTACAGCTCGTACCATCCT
BO11879.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15188-PA | 843 | Osi20-RA | 1..765 | 17..781 | 3825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:48:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi20-RA | 1264 | CG15188-RA | 94..858 | 17..781 | 3825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:48:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6340188..6340593 | 17..422 | 2030 | 100 | Plus |
3R | 32079331 | 3R | 6340656..6341018 | 419..781 | 1815 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 16:48:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1507..1581 | 521..448 | 138 | 66.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2407..2478 | 519..448 | 126 | 63.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2300..2370 | 518..448 | 121 | 63.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2559..2655 | 545..448 | 118 | 59.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2375 | 511..446 | 114 | 63.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6800 | 511..448 | 113 | 64.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2455..2523 | 519..448 | 110 | 63.9 | Minus |
BO11879.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:29 Download gff for
BO11879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi20-PA | 1..765 | 17..781 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:26 Download gff for
BO11879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15188-PA | 1..765 | 17..781 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:46:59 Download gff for
BO11879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi20-RA | 90..858 | 9..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:21:31 Download gff for
BO11879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi20-RA | 90..858 | 9..781 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:21:31 Download gff for
BO11879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6340184..6340590 | 9..419 | 99 | -> | Plus |
3R | 6340657..6341018 | 420..781 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:46:59 Download gff for
BO11879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2165906..2166312 | 9..419 | 99 | -> | Plus |
arm_3R | 2166379..2166740 | 420..781 | 100 | | Plus |
BO11879.complete Sequence
874 bp assembled on 2006-10-11
GenBank Submission: FJ632230
> BO11879.complete
GAAGTTATCAGTCGACATGGCTTTCCGCTCCACGTCCTTGCTCGCGTTCG
GTTGTGCGCTGCTGCTGGTGGCCTCCACATCCGTGTCCGGTGCTGCCATC
GAGAACGCGGTGACCCCGCGGATCCACAGCTCCGACGAGCTGATCTCGAC
AATTGTGGATAAGTGCTTCCATGCCAATGCGATGCATTGCCTGAAGGAGA
AGGTGCTCACCTACCTGGACACGGTAGCCAATGTGGAGGAGGAGGTCAGC
GGACGCGCCCTGGGTGACGATGTAATCGACAAGGTCATTGTGGACCGCCT
GGGCCGCATTCTGAACACCAACGAGATGAGGTTGCAGCTGCCACAGACCT
TCTTCGCTGGTTCCGTGGTGACCTATCGCTCGGATCGCGGTTTTGATCTG
GAGTTGCCCAAGGATGAGGGTCGCGCTGAGAAGAAGAACAAGGACAAGCT
GTTCCTGCCCCTGCTGCTGCTGATGAAGTTCAAGCTGAAGGTGATCATGC
CCATCTTGCTGGCTCTGATCGGTCTGAAGGCCACCAAGGCTCTGATTCTG
TCCAAGATTGCCATCAAGCTGGTGCTGGGCTTCCTGATCTACAACCTTAT
CCAGAAGTTGGGAGGCATGAAGATGAACATGGTGCCCATGCCCGCCCCAG
TTCCGGCCAGCGAATACGGAGTGCCCAGCACCACCGCCTCATCCTACGAT
CCCAGCAGCTGGGAGCCCATGAGCGGAGGTCCCTATGCCCGTTGGGACTC
GCAGAACCTGGCCTACAGCTCGTACCATCCTAGCAGCTCGTCGTCCTACT
CCTCGGGATCCTCGTCGGGATCCTCGGGTTCTTCGTCCAGCTACAGCTCG
TCCTCCGCAAGCTTTCTAGACCAT
BO11879.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:02:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi20-RA | 843 | CG15188-PA | 1..840 | 17..856 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi20-RA | 1264 | CG15188-RA | 94..933 | 17..856 | 4200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:01:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6340656..6341093 | 419..856 | 2190 | 100 | Plus |
3R | 32079331 | 3R | 6340188..6340593 | 17..422 | 2030 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:01:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1507..1581 | 521..448 | 138 | 66.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2407..2478 | 519..448 | 126 | 63.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2300..2370 | 518..448 | 121 | 63.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2559..2655 | 545..448 | 118 | 59.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2375 | 511..446 | 114 | 63.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6800 | 511..448 | 113 | 64.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2455..2523 | 519..448 | 110 | 63.9 | Minus |
BO11879.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:37 Download gff for
BO11879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi20-RA | 1..843 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:11:29 Download gff for
BO11879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi20-RA | 88..934 | 9..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:05:02 Download gff for
BO11879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi20-RA | 94..933 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:37 Download gff for
BO11879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi20-RA | 88..934 | 9..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:25 Download gff for
BO11879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi20-RA | 94..933 | 17..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:25 Download gff for
BO11879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6340188..6340590 | 17..419 | 100 | -> | Plus |
3R | 6340657..6341093 | 420..858 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:05:02 Download gff for
BO11879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2165910..2166312 | 17..419 | 100 | -> | Plus |
arm_3R | 2166379..2166815 | 420..858 | 99 | | Plus |
BO11879.pep Sequence
Translation from 16 to 874
> BO11879.pep
MAFRSTSLLAFGCALLLVASTSVSGAAIENAVTPRIHSSDELISTIVDKC
FHANAMHCLKEKVLTYLDTVANVEEEVSGRALGDDVIDKVIVDRLGRILN
TNEMRLQLPQTFFAGSVVTYRSDRGFDLELPKDEGRAEKKNKDKLFLPLL
LLMKFKLKVIMPILLALIGLKATKALILSKIAIKLVLGFLIYNLIQKLGG
MKMNMVPMPAPVPASEYGVPSTTASSYDPSSWEPMSGGPYARWDSQNLAY
SSYHPSSSSSYSSGSSSGSSGSSSSYSSSSASFLDH
BO11879.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi20-PA | 280 | CG15188-PA | 1..280 | 1..280 | 1401 | 100 | Plus |
Osi9-PA | 233 | CG15592-PA | 1..181 | 8..185 | 175 | 23.9 | Plus |
Osi7-PA | 288 | CG1153-PA | 6..264 | 9..279 | 172 | 21.1 | Plus |