Clone Sequence Records
BO11880.3prime Sequence
774 bp (746 high quality bases) assembled on 2006-04-19
> BO11880.3prime
ATGGTCTAGAAAGCTTGCAAATCCACTAACTCCACCTGGCTTCCGAAAAT
CCGAGTTCACCCAGATGGTGTCGTTAGCTTGAGCGATTCCACAGATGACG
GAACCGCGGTTCTCATAACGCTCGCATCGATGTCCCCTCTCCGCCAAGCT
ATCCACATAGCTCTGCCGTAGTCCATACTCGTAGAGCAGAACATTGGGCA
GCATTTGATGATGGATGCGGCTGGCATCGATGGCGGCCTTGATGCTTGCC
TCCTGCCACAGGATGCGCACGAGGAGGGGAGAGAGGGCAGAGATTATTTT
GGTACCGCCAGCGGCACCCACAACCAAGCGAACGTTGCCAGTGGCGCGTT
CCGTGACAATCACTGGACACATGGAGGACATGGGACGGGCGGCAGGAGCT
ACACCATTCGTGCCAGGCACGAAGGGCAGATCGAAGTAGTTCTTGAGCTG
TTCGATGGAGAAATCCGACATGGCATTGTTAAAGATGACACCTGTGCGCC
TGCCAGTTCGTCCACTGCCAAAATAGAAATTGATGGAGCTTGTCACTGAA
ACTGCATCGTTTCCATGGAGCACTGAAGTGTGCGCTGTGCCGTGCTCATC
ACGTATTTGAATTCCAGGTGAAGCTCCATAGAACTCTGGTCGGTTAAAGG
TGTGTGTGTGGTTAATTTGCCTGGCCACGGATTTTGCCAATTCATGACTG
GTCAAATTCGACAAAAGCTCTTCGCTCGCGGATTCATCCCAGTTGCCATC
GCTTGACGAATCCAAACTTCATTG
BO11880.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1492-PA | 1779 | CG1492-RA | 1056..1776 | 739..19 | 3605 | 100 | Minus |
CG1492-PA | 1779 | CG1492-RA | 1022..1057 | 774..739 | 180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:59:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1492-RB | 2289 | CG1492-RB | 1149..1903 | 774..19 | 3755 | 99.9 | Minus |
CG1492-RA | 2000 | CG1492-RA | 1149..1903 | 774..19 | 3755 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:59:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12010097..12010601 | 19..523 | 2525 | 100 | Plus |
X | 23542271 | X | 12010673..12010868 | 524..719 | 980 | 100 | Plus |
X | 23542271 | X | 12010948..12011003 | 718..774 | 235 | 98.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:59:31 has no hits.
BO11880.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:30 Download gff for
BO11880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1492-PA | 1022..1779 | 15..774 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:27 Download gff for
BO11880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1492-PA | 1022..1779 | 15..774 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:24:09 Download gff for
BO11880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1492-RA | 1149..1906 | 15..774 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:35:48 Download gff for
BO11880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1492-RA | 1149..1906 | 15..774 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:35:48 Download gff for
BO11880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12010093..12010601 | 15..523 | 99 | <- | Plus |
X | 12010673..12010866 | 524..717 | 100 | <- | Plus |
X | 12010948..12011003 | 718..774 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:24:09 Download gff for
BO11880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11904126..11904634 | 15..523 | 99 | <- | Plus |
arm_X | 11904706..11904899 | 524..717 | 100 | <- | Plus |
arm_X | 11904981..11905036 | 718..774 | 98 | | Plus |
BO11880.5prime Sequence
825 bp (759 high quality bases) assembled on 2006-04-19
> BO11880.5prime
GAAGTTATCAGTCGACATGTACATTAGGATAGGATTGAATAGTTTGATAT
CCGTGGTGATTGTCATCCTGGTGGCAGTCTATATCTACCGGTATCCGGAC
GGAAATGCTGGCAAAAAGAAGGCGTCCAGGAGACCGCCAAATCCGGAGGA
TCCACTGCCGCCCTCCAATTCGCCGCTCCATCGATTCTCCCGGGCGGCCA
TTTGCTCCGACAGCGATGTGTGCAGCCAATTGGCCAAAAAAGTCCTGGAG
AATGGAGGAAGTGCTGTGGATGGCGCCTTGGCTGCTCTCATTTGCAACGG
ACTCATCGGGATGCAGAGCATGGGCATCGGTGGCGGCATGGTGATGAATG
TTTATGTGGCCAAGGAGAACAAATCCTACAGCATTCTGGCCAGGGAAATG
GCGCCGCTGGCATTGCGTGCGGATAACTTCTCGTCATTTCGCGATGAGCA
GGATTTCAAGAGATCCGGATGGTCCATTGCCGTGCCAGCTGAATTGGCCG
GTTATGCGGTGGCCCACCAGAGATTCGGGCGGCTAAAGTGGAAGGATTTG
GTGCTGCCAACTTTGGAATTGTGTCGTCGTGGCTATCGATTGTATAAGCA
CCAGTATGATGCGCTCATACTCAATCAGGACATGATCAGGGCCGATTCCG
GCCTACGCCGGATGTTCATCGATCCCGACACCGGGCGCTTCTGGCCATTG
GGTCATCTCATTCGCCCTGCGGCTCAATTGTGCAACACCTACGATCGGTT
GGCCAACGAGGGACCACTCAGTTTCTACCGCGGATCTATCGCCGATGATC
TGCTGGCCGACTTGAAGGACGCGGG
BO11880.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1492-PA | 1779 | CG1492-RA | 1..809 | 17..825 | 4045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:53:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1492-RB | 2289 | CG1492-RB | 128..936 | 17..825 | 4045 | 100 | Plus |
CG1492-RA | 2000 | CG1492-RA | 128..936 | 17..825 | 4045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:53:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12011216..12011934 | 825..107 | 3595 | 100 | Minus |
X | 23542271 | X | 12011990..12012084 | 111..17 | 460 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:53:36 has no hits.
BO11880.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:31 Download gff for
BO11880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1492-PA | 1..809 | 17..825 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:28 Download gff for
BO11880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1492-PA | 1..809 | 17..825 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 04:02:42 Download gff for
BO11880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1492-RA | 124..936 | 10..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:05 Download gff for
BO11880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1492-RA | 124..936 | 10..825 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:05 Download gff for
BO11880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12011216..12011933 | 108..825 | 100 | <- | Minus |
X | 12011994..12012088 | 10..107 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 04:02:42 Download gff for
BO11880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11905249..11905966 | 108..825 | 100 | <- | Minus |
arm_X | 11906027..11906121 | 10..107 | 96 | | Minus |
BO11880.complete Sequence
1810 bp assembled on 2008-01-17
GenBank Submission: FJ632231
> BO11880.complete
GAAGTTATCAGTCGACATGTACATTAGGATAGGATTGAATAGTTTGATAT
CCGTGGTGATTGTCATCCTGGTGGCAGTCTATATCTACCGGTATCCGGAC
GGAAATGCTGGCAAAAAGAAGGCGTCCAGGAGACCGCCAAATCCGGAGGA
TCCACTGCCGCCCTCCAATTCGCCGCTCCATCGATTCTCCCGGGCGGCCA
TTTGCTCCGACAGCGATGTGTGCAGCCAATTGGCCAAAAAAGTCCTGGAG
AATGGAGGAAGTGCTGTGGATGGCGCCTTGGCTGCTCTCATTTGCAACGG
ACTCATCGGGATGCAGAGCATGGGCATCGGTGGCGGCATGGTGATGAATG
TTTATGTGGCCAAGGAGAACAAATCCTACAGCATTCTGGCCAGGGAAATG
GCGCCGCTGGCATTGCGTGCGGATAACTTCTCGTCATTTCGCGATGAGCA
GGATTTCAAGAGATCCGGATGGTCCATTGCCGTGCCAGCTGAATTGGCCG
GTTATGCGGTGGCCCACCAGAGATTCGGGCGGCTAAAGTGGAAGGATTTG
GTGCTGCCAACTTTGGAATTGTGTCGTCGTGGCTATCGATTGTATAAGCA
CCAGTATGATGCGCTCATACTCAATCAGGACATGATCAGGGCCGATTCCG
GCCTACGCCGGATGTTCATCGATCCCGACACCGGGCGCTTCTGGCCATTG
GGTCATCTCATTCGCCCTGCGGCTCAATTGTGCAACACCTACGATCGGTT
GGCCAACGAGGGACCACTCAGTTTCTACCGCGGATCTATCGCCGATGATC
TGCTGGCCGACTTGAAGGACGCGGGCAGTGCAATAACTAAGGAAGACCTC
AACCAAGCGCACGCCAAATTGAGTAGCGCCATTGTGATGCCACTGGATGA
GTATGATCTCCATTTGACTCCTCCACCTGGAAGTGGTCACGTTCTCGGCT
TCATAATGAACATACTAAAGGAGTTCCGGGCGGAATTCTCAAGAGCCGGA
ACTATGAGCCCACGTCAAATCCATTTGATGGTCGAGGCAATGAAGTTTGG
ATTCGTCAAGCGATGGCAACTGGATGAATCCGCGAGCGAAGAGCTTTTGT
CGAATTTGACCAGTCATGAATTGGCAAAATCCGTGGCCAGGCAAATTAAC
CACACACACACCTTTAACCGACCAGAGTTCTATGGAGCTTCACCTGGAAT
TCAAATACGTGATGAGCACGGCACAGCGCACACTTCAGTGCTCCATGGAA
ACGATGCAGTTTCAGTGACAAGCTCCATCAATTTCTATTTTGGCAGTGGA
CGAACTGGCAGGCGCACAGGTGTCATCTTTAACAATGCCATGTCGGATTT
CTCCATCGAACAGCTCAAGAACTACTTCGATCTGCCCTTCGTGCCTGGCA
CGAATGGTGTAGCTCCTGCCGCCCGTCCCATGTCCTCCATGTGTCCAGTG
ATTGTCACGGAACGCGCCACTGGCAACGTTCGCTTGGTTGTGGGTGCCGC
TGGCGGTACCAAAATAATCTCTGCCCTCTCTCCCCTCCTCGTGCGCATCC
TGTGGCAGGAGGCAAGCATCAAGGCCGCCATCGATGCCAGCCGCATCCAT
CATCAAATGCTGCCCAATGTTCTGCTCTACGAGTATGGACTACGGCAGAG
CTATGTGGATAGCTTGGCGGAGAGGGGACATCGATGCGAGCGTTATGAGA
ACCGCGGTTCCGTCATCTGTGGAATCGCTCAAGCTAACGACACCATCTGG
GTGAACTCGGATTTTCGGAAGCCAGGTGGAGTTAGTGGATTTGCAAGCTT
TCTAGACCAT
BO11880.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:18:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1492-RB | 1779 | CG1492-PB | 1..1776 | 17..1792 | 8880 | 100 | Plus |
CG1492-RA | 1779 | CG1492-PA | 1..1776 | 17..1792 | 8880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:18:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1492-RB | 2289 | CG1492-RB | 128..1903 | 17..1792 | 8880 | 100 | Plus |
CG1492-RA | 2000 | CG1492-RA | 128..1903 | 17..1792 | 8880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:18:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12010948..12011934 | 1093..107 | 4935 | 100 | Minus |
X | 23542271 | X | 12010097..12010601 | 1792..1288 | 2525 | 100 | Minus |
X | 23542271 | X | 12010673..12010868 | 1287..1092 | 980 | 100 | Minus |
X | 23542271 | X | 12011990..12012084 | 111..17 | 460 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:18:25 has no hits.
BO11880.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:28 Download gff for
BO11880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1492-RA | 1..1779 | 17..1796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:45 Download gff for
BO11880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1492-RA | 126..1901 | 17..1794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:37 Download gff for
BO11880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1492-RA | 128..1903 | 17..1794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:28 Download gff for
BO11880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1492-RA | 122..1904 | 10..1796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:04 Download gff for
BO11880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1492-RA | 128..1903 | 17..1794 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:04 Download gff for
BO11880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12010095..12010601 | 1288..1794 | 99 | <- | Minus |
X | 12010673..12010866 | 1094..1287 | 100 | <- | Minus |
X | 12010948..12011933 | 108..1093 | 100 | <- | Minus |
X | 12011994..12012084 | 17..107 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:37 Download gff for
BO11880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11904128..11904634 | 1288..1794 | 99 | <- | Minus |
arm_X | 11904706..11904899 | 1094..1287 | 100 | <- | Minus |
arm_X | 11904981..11905966 | 108..1093 | 100 | <- | Minus |
arm_X | 11906027..11906117 | 17..107 | 100 | | Minus |
BO11880.pep Sequence
Translation from 16 to 1810
> BO11880.pep
MYIRIGLNSLISVVIVILVAVYIYRYPDGNAGKKKASRRPPNPEDPLPPS
NSPLHRFSRAAICSDSDVCSQLAKKVLENGGSAVDGALAALICNGLIGMQ
SMGIGGGMVMNVYVAKENKSYSILAREMAPLALRADNFSSFRDEQDFKRS
GWSIAVPAELAGYAVAHQRFGRLKWKDLVLPTLELCRRGYRLYKHQYDAL
ILNQDMIRADSGLRRMFIDPDTGRFWPLGHLIRPAAQLCNTYDRLANEGP
LSFYRGSIADDLLADLKDAGSAITKEDLNQAHAKLSSAIVMPLDEYDLHL
TPPPGSGHVLGFIMNILKEFRAEFSRAGTMSPRQIHLMVEAMKFGFVKRW
QLDESASEELLSNLTSHELAKSVARQINHTHTFNRPEFYGASPGIQIRDE
HGTAHTSVLHGNDAVSVTSSINFYFGSGRTGRRTGVIFNNAMSDFSIEQL
KNYFDLPFVPGTNGVAPAARPMSSMCPVIVTERATGNVRLVVGAAGGTKI
ISALSPLLVRILWQEASIKAAIDASRIHHQMLPNVLLYEYGLRQSYVDSL
AERGHRCERYENRGSVICGIAQANDTIWVNSDFRKPGGVSGFASFLDH
BO11880.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:27:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1492-PB | 592 | CG1492-PB | 1..592 | 1..592 | 3072 | 100 | Plus |
CG1492-PA | 592 | CG1492-PA | 1..592 | 1..592 | 3072 | 100 | Plus |
CG4829-PD | 687 | CG4829-PD | 146..687 | 51..592 | 967 | 40.2 | Plus |
CG4829-PE | 732 | CG4829-PE | 191..732 | 51..592 | 967 | 40.2 | Plus |
CG4829-PC | 777 | CG4829-PC | 236..777 | 51..592 | 967 | 40.2 | Plus |