Clone BO11880 Report

Search the DGRC for BO11880

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:118
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG1492-RA
Protein status:BO11880.pep:
Sequenced Size:1810

Clone Sequence Records

BO11880.3prime Sequence

774 bp (746 high quality bases) assembled on 2006-04-19

> BO11880.3prime
ATGGTCTAGAAAGCTTGCAAATCCACTAACTCCACCTGGCTTCCGAAAAT
CCGAGTTCACCCAGATGGTGTCGTTAGCTTGAGCGATTCCACAGATGACG
GAACCGCGGTTCTCATAACGCTCGCATCGATGTCCCCTCTCCGCCAAGCT
ATCCACATAGCTCTGCCGTAGTCCATACTCGTAGAGCAGAACATTGGGCA
GCATTTGATGATGGATGCGGCTGGCATCGATGGCGGCCTTGATGCTTGCC
TCCTGCCACAGGATGCGCACGAGGAGGGGAGAGAGGGCAGAGATTATTTT
GGTACCGCCAGCGGCACCCACAACCAAGCGAACGTTGCCAGTGGCGCGTT
CCGTGACAATCACTGGACACATGGAGGACATGGGACGGGCGGCAGGAGCT
ACACCATTCGTGCCAGGCACGAAGGGCAGATCGAAGTAGTTCTTGAGCTG
TTCGATGGAGAAATCCGACATGGCATTGTTAAAGATGACACCTGTGCGCC
TGCCAGTTCGTCCACTGCCAAAATAGAAATTGATGGAGCTTGTCACTGAA
ACTGCATCGTTTCCATGGAGCACTGAAGTGTGCGCTGTGCCGTGCTCATC
ACGTATTTGAATTCCAGGTGAAGCTCCATAGAACTCTGGTCGGTTAAAGG
TGTGTGTGTGGTTAATTTGCCTGGCCACGGATTTTGCCAATTCATGACTG
GTCAAATTCGACAAAAGCTCTTCGCTCGCGGATTCATCCCAGTTGCCATC
GCTTGACGAATCCAAACTTCATTG

BO11880.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1492-PA 1779 CG1492-RA 1056..1776 739..19 3605 100 Minus
CG1492-PA 1779 CG1492-RA 1022..1057 774..739 180 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG1492-RB 2289 CG1492-RB 1149..1903 774..19 3755 99.9 Minus
CG1492-RA 2000 CG1492-RA 1149..1903 774..19 3755 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12010097..12010601 19..523 2525 100 Plus
X 23542271 X 12010673..12010868 524..719 980 100 Plus
X 23542271 X 12010948..12011003 718..774 235 98.2 Plus
Blast to na_te.dros performed on 2015-02-12 18:59:31 has no hits.

BO11880.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:30 Download gff for BO11880.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1492-PA 1022..1779 15..774 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:27 Download gff for BO11880.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1492-PA 1022..1779 15..774 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:24:09 Download gff for BO11880.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1492-RA 1149..1906 15..774 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:35:48 Download gff for BO11880.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1492-RA 1149..1906 15..774 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:35:48 Download gff for BO11880.3prime
Subject Subject Range Query Range Percent Splice Strand
X 12010093..12010601 15..523 99 <- Plus
X 12010673..12010866 524..717 100 <- Plus
X 12010948..12011003 718..774 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:24:09 Download gff for BO11880.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11904126..11904634 15..523 99 <- Plus
arm_X 11904706..11904899 524..717 100 <- Plus
arm_X 11904981..11905036 718..774 98   Plus

BO11880.5prime Sequence

825 bp (759 high quality bases) assembled on 2006-04-19

> BO11880.5prime
GAAGTTATCAGTCGACATGTACATTAGGATAGGATTGAATAGTTTGATAT
CCGTGGTGATTGTCATCCTGGTGGCAGTCTATATCTACCGGTATCCGGAC
GGAAATGCTGGCAAAAAGAAGGCGTCCAGGAGACCGCCAAATCCGGAGGA
TCCACTGCCGCCCTCCAATTCGCCGCTCCATCGATTCTCCCGGGCGGCCA
TTTGCTCCGACAGCGATGTGTGCAGCCAATTGGCCAAAAAAGTCCTGGAG
AATGGAGGAAGTGCTGTGGATGGCGCCTTGGCTGCTCTCATTTGCAACGG
ACTCATCGGGATGCAGAGCATGGGCATCGGTGGCGGCATGGTGATGAATG
TTTATGTGGCCAAGGAGAACAAATCCTACAGCATTCTGGCCAGGGAAATG
GCGCCGCTGGCATTGCGTGCGGATAACTTCTCGTCATTTCGCGATGAGCA
GGATTTCAAGAGATCCGGATGGTCCATTGCCGTGCCAGCTGAATTGGCCG
GTTATGCGGTGGCCCACCAGAGATTCGGGCGGCTAAAGTGGAAGGATTTG
GTGCTGCCAACTTTGGAATTGTGTCGTCGTGGCTATCGATTGTATAAGCA
CCAGTATGATGCGCTCATACTCAATCAGGACATGATCAGGGCCGATTCCG
GCCTACGCCGGATGTTCATCGATCCCGACACCGGGCGCTTCTGGCCATTG
GGTCATCTCATTCGCCCTGCGGCTCAATTGTGCAACACCTACGATCGGTT
GGCCAACGAGGGACCACTCAGTTTCTACCGCGGATCTATCGCCGATGATC
TGCTGGCCGACTTGAAGGACGCGGG

BO11880.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1492-PA 1779 CG1492-RA 1..809 17..825 4045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:53:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG1492-RB 2289 CG1492-RB 128..936 17..825 4045 100 Plus
CG1492-RA 2000 CG1492-RA 128..936 17..825 4045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12011216..12011934 825..107 3595 100 Minus
X 23542271 X 12011990..12012084 111..17 460 98.9 Minus
Blast to na_te.dros performed on 2015-02-10 20:53:36 has no hits.

BO11880.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:31 Download gff for BO11880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1492-PA 1..809 17..825 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:28 Download gff for BO11880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1492-PA 1..809 17..825 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 04:02:42 Download gff for BO11880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1492-RA 124..936 10..825 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:05 Download gff for BO11880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1492-RA 124..936 10..825 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:05 Download gff for BO11880.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12011216..12011933 108..825 100 <- Minus
X 12011994..12012088 10..107 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 04:02:42 Download gff for BO11880.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11905249..11905966 108..825 100 <- Minus
arm_X 11906027..11906121 10..107 96   Minus

BO11880.complete Sequence

1810 bp assembled on 2008-01-17

GenBank Submission: FJ632231

> BO11880.complete
GAAGTTATCAGTCGACATGTACATTAGGATAGGATTGAATAGTTTGATAT
CCGTGGTGATTGTCATCCTGGTGGCAGTCTATATCTACCGGTATCCGGAC
GGAAATGCTGGCAAAAAGAAGGCGTCCAGGAGACCGCCAAATCCGGAGGA
TCCACTGCCGCCCTCCAATTCGCCGCTCCATCGATTCTCCCGGGCGGCCA
TTTGCTCCGACAGCGATGTGTGCAGCCAATTGGCCAAAAAAGTCCTGGAG
AATGGAGGAAGTGCTGTGGATGGCGCCTTGGCTGCTCTCATTTGCAACGG
ACTCATCGGGATGCAGAGCATGGGCATCGGTGGCGGCATGGTGATGAATG
TTTATGTGGCCAAGGAGAACAAATCCTACAGCATTCTGGCCAGGGAAATG
GCGCCGCTGGCATTGCGTGCGGATAACTTCTCGTCATTTCGCGATGAGCA
GGATTTCAAGAGATCCGGATGGTCCATTGCCGTGCCAGCTGAATTGGCCG
GTTATGCGGTGGCCCACCAGAGATTCGGGCGGCTAAAGTGGAAGGATTTG
GTGCTGCCAACTTTGGAATTGTGTCGTCGTGGCTATCGATTGTATAAGCA
CCAGTATGATGCGCTCATACTCAATCAGGACATGATCAGGGCCGATTCCG
GCCTACGCCGGATGTTCATCGATCCCGACACCGGGCGCTTCTGGCCATTG
GGTCATCTCATTCGCCCTGCGGCTCAATTGTGCAACACCTACGATCGGTT
GGCCAACGAGGGACCACTCAGTTTCTACCGCGGATCTATCGCCGATGATC
TGCTGGCCGACTTGAAGGACGCGGGCAGTGCAATAACTAAGGAAGACCTC
AACCAAGCGCACGCCAAATTGAGTAGCGCCATTGTGATGCCACTGGATGA
GTATGATCTCCATTTGACTCCTCCACCTGGAAGTGGTCACGTTCTCGGCT
TCATAATGAACATACTAAAGGAGTTCCGGGCGGAATTCTCAAGAGCCGGA
ACTATGAGCCCACGTCAAATCCATTTGATGGTCGAGGCAATGAAGTTTGG
ATTCGTCAAGCGATGGCAACTGGATGAATCCGCGAGCGAAGAGCTTTTGT
CGAATTTGACCAGTCATGAATTGGCAAAATCCGTGGCCAGGCAAATTAAC
CACACACACACCTTTAACCGACCAGAGTTCTATGGAGCTTCACCTGGAAT
TCAAATACGTGATGAGCACGGCACAGCGCACACTTCAGTGCTCCATGGAA
ACGATGCAGTTTCAGTGACAAGCTCCATCAATTTCTATTTTGGCAGTGGA
CGAACTGGCAGGCGCACAGGTGTCATCTTTAACAATGCCATGTCGGATTT
CTCCATCGAACAGCTCAAGAACTACTTCGATCTGCCCTTCGTGCCTGGCA
CGAATGGTGTAGCTCCTGCCGCCCGTCCCATGTCCTCCATGTGTCCAGTG
ATTGTCACGGAACGCGCCACTGGCAACGTTCGCTTGGTTGTGGGTGCCGC
TGGCGGTACCAAAATAATCTCTGCCCTCTCTCCCCTCCTCGTGCGCATCC
TGTGGCAGGAGGCAAGCATCAAGGCCGCCATCGATGCCAGCCGCATCCAT
CATCAAATGCTGCCCAATGTTCTGCTCTACGAGTATGGACTACGGCAGAG
CTATGTGGATAGCTTGGCGGAGAGGGGACATCGATGCGAGCGTTATGAGA
ACCGCGGTTCCGTCATCTGTGGAATCGCTCAAGCTAACGACACCATCTGG
GTGAACTCGGATTTTCGGAAGCCAGGTGGAGTTAGTGGATTTGCAAGCTT
TCTAGACCAT

BO11880.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:18:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1492-RB 1779 CG1492-PB 1..1776 17..1792 8880 100 Plus
CG1492-RA 1779 CG1492-PA 1..1776 17..1792 8880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:18:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG1492-RB 2289 CG1492-RB 128..1903 17..1792 8880 100 Plus
CG1492-RA 2000 CG1492-RA 128..1903 17..1792 8880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:18:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12010948..12011934 1093..107 4935 100 Minus
X 23542271 X 12010097..12010601 1792..1288 2525 100 Minus
X 23542271 X 12010673..12010868 1287..1092 980 100 Minus
X 23542271 X 12011990..12012084 111..17 460 98.9 Minus
Blast to na_te.dros performed on 2014-11-28 00:18:25 has no hits.

BO11880.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:28 Download gff for BO11880.complete
Subject Subject Range Query Range Percent Splice Strand
CG1492-RA 1..1779 17..1796 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:45 Download gff for BO11880.complete
Subject Subject Range Query Range Percent Splice Strand
CG1492-RA 126..1901 17..1794 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:37 Download gff for BO11880.complete
Subject Subject Range Query Range Percent Splice Strand
CG1492-RA 128..1903 17..1794 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:28 Download gff for BO11880.complete
Subject Subject Range Query Range Percent Splice Strand
CG1492-RA 122..1904 10..1796 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:04 Download gff for BO11880.complete
Subject Subject Range Query Range Percent Splice Strand
CG1492-RA 128..1903 17..1794 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:04 Download gff for BO11880.complete
Subject Subject Range Query Range Percent Splice Strand
X 12010095..12010601 1288..1794 99 <- Minus
X 12010673..12010866 1094..1287 100 <- Minus
X 12010948..12011933 108..1093 100 <- Minus
X 12011994..12012084 17..107 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:37 Download gff for BO11880.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11904128..11904634 1288..1794 99 <- Minus
arm_X 11904706..11904899 1094..1287 100 <- Minus
arm_X 11904981..11905966 108..1093 100 <- Minus
arm_X 11906027..11906117 17..107 100   Minus

BO11880.pep Sequence

Translation from 16 to 1810

> BO11880.pep
MYIRIGLNSLISVVIVILVAVYIYRYPDGNAGKKKASRRPPNPEDPLPPS
NSPLHRFSRAAICSDSDVCSQLAKKVLENGGSAVDGALAALICNGLIGMQ
SMGIGGGMVMNVYVAKENKSYSILAREMAPLALRADNFSSFRDEQDFKRS
GWSIAVPAELAGYAVAHQRFGRLKWKDLVLPTLELCRRGYRLYKHQYDAL
ILNQDMIRADSGLRRMFIDPDTGRFWPLGHLIRPAAQLCNTYDRLANEGP
LSFYRGSIADDLLADLKDAGSAITKEDLNQAHAKLSSAIVMPLDEYDLHL
TPPPGSGHVLGFIMNILKEFRAEFSRAGTMSPRQIHLMVEAMKFGFVKRW
QLDESASEELLSNLTSHELAKSVARQINHTHTFNRPEFYGASPGIQIRDE
HGTAHTSVLHGNDAVSVTSSINFYFGSGRTGRRTGVIFNNAMSDFSIEQL
KNYFDLPFVPGTNGVAPAARPMSSMCPVIVTERATGNVRLVVGAAGGTKI
ISALSPLLVRILWQEASIKAAIDASRIHHQMLPNVLLYEYGLRQSYVDSL
AERGHRCERYENRGSVICGIAQANDTIWVNSDFRKPGGVSGFASFLDH

BO11880.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:27:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1492-PB 592 CG1492-PB 1..592 1..592 3072 100 Plus
CG1492-PA 592 CG1492-PA 1..592 1..592 3072 100 Plus
CG4829-PD 687 CG4829-PD 146..687 51..592 967 40.2 Plus
CG4829-PE 732 CG4829-PE 191..732 51..592 967 40.2 Plus
CG4829-PC 777 CG4829-PC 236..777 51..592 967 40.2 Plus