Clone BO11881 Report

Search the DGRC for BO11881

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:118
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptCG33970-RA
Protein status:BO11881.pep:
Sequenced Size:2365

Clone Sequence Records

BO11881.3prime Sequence

832 bp (827 high quality bases) assembled on 2006-04-19

> BO11881.3prime
ATGGTCTAGAAAGCTTGCTCCCTTCTTGAACTTGAGCAGCAGGATGGTAA
GTACGAGGAATACCAGAACCCAGGAAGAAATGGAAATAAACCCATTGTAG
ACGACGGGATTGTCGATGCCCCAGCCGCGTTGCAGTATGGATCGCATTGA
TTCCGTTGGTTTGGTGAGCGGCAGGAAGGCTGTGAAGAACTGCAGAAGCG
GGAACATGCCCTCGATCGGCCAGATAATGCCGCACAACATAACGATGGGC
AAGAACGAGCCCATCGCCACATAAGTCGCAGTTCGCTCCGTGTCCACAGC
ACAGGAAATAACGAATCCGAAGCTCATGCCACACAGTCCATTCAGGATGC
AGAGTGCCACCACCAGCCATATGTTACCCACCAAGGTAAGTTCGAAGAAG
TAGAAGCTGACAATCAGTACGAAGGTCGTCTGGCTTAGCATCACCGTGAA
CTGGGTGACCACCTGGGAGAGAAGAATCTCCGGACCCGTGATTCCAGCTA
CCAAACAACGCTCCAACATGCCCTCATTCCGATCAATTAACATAGCTCCG
GAGGTAACAGCCACGGCCAAAAAGAAGATGATCGTCAGGATAACTCCGGG
AGCAGCAAAGTCTGTGAAATTGGGATTGCGATAGCCATAAACAGGATGCT
GGAAGTCCACGGGCACACGACCTAGTTTCGGATTCACATCACAGTCGCTT
AGCATGTCACCCACAAAGTTGAAGAATGTGTACTGGAGATCGCGGTACAG
CAACTGTGAGATTTGTTGATTTGACCAGTCCATTCGTACTGCTAGGTCCG
AGGACTCAATAGTTCCATCTTCGGCATACCGA

BO11881.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG33970-PA 2334 CG33970-RA 1518..2331 832..19 4070 100 Minus
CG33970-PB 1557 CG33970-RB 741..1554 832..19 4070 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG33970-RC 3989 CG33970-RC 2149..2962 832..19 4070 100 Minus
CG33970-RB 2072 CG33970-RB 834..1647 832..19 4070 100 Minus
CG33970-RA 3387 CG33970-RA 2149..2962 832..19 4070 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 18:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26360810..26361561 770..19 3760 100 Minus
3R 32079331 3R 26360680..26360741 832..771 310 100 Minus
Blast to na_te.dros performed on 2015-02-06 18:42:41 has no hits.

BO11881.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:32 Download gff for BO11881.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33970-PA 1519..2334 15..831 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:29 Download gff for BO11881.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33970-PB 742..1557 15..831 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:41:36 Download gff for BO11881.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33970-RA 2150..2966 14..831 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:46:28 Download gff for BO11881.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33970-RA 2150..2966 14..831 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:46:28 Download gff for BO11881.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26360681..26360741 771..831 100 -> Minus
3R 26360810..26361565 14..770 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:41:36 Download gff for BO11881.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22186403..22186463 771..831 100 -> Minus
arm_3R 22186532..22187287 14..770 99   Minus

BO11881.5prime Sequence

788 bp (786 high quality bases) assembled on 2006-04-19

> BO11881.5prime
GAAGTTATCAGTCGACATGGACGCCGCTGCCGACGGAGTACCGCCAACGG
CGCCAGCTGCGACGGCGACGACGGCCAACAGTGATCTGGACTTGGCGGCA
CGTCGGCGTCTCTTCATCTCACAGCCCTCGACGCTGGCGACGCGCCGCCA
GCAGGCGGTTTGTGTGCGGCGGGCCCACAAAATGTATGGCAGCAGCAAGA
ACCCCAACGTTGTCCTCGACGGCCTGAACATGACAGTGCCCAAGGGTTCC
ATATATGGTCTCTTGGGCGCATCTGGATGCGGGAAAACAACGCTGCTCAG
CTGCATCGTCGGACGACGTCGCCTTAATTCTGGCGAGATTTGGGTACTCG
GCGGGCGACCCGGATCTCGGGGTTCCGGAGTGCCTGGACCCCGGATTGGC
TATATGCCACAGGAGATAGCCCTTTACGGCGAGTTCACGATGCGTGAGAC
CTTAATCTACTTCGGCATCATTTCTGCCATGTCCAAAGGCGACATCGAGG
ATCGTACAGAATTCCTTCTCAAATTACTTAATTTGCCAAATGCCTCCAAA
TTTGTCAAGAATCTGAGTGGCGGCCAGCAGCGGCGAGTGAGTCTGGCGGT
GGCTCTGCTCCATGAGCCGGAGCTACTCATCCTGGATGAGCCCACAGTGG
GGGTGGACCCCGTTTTGCGTCAGAGCATCTGGGATCATTTGGTGGACATT
ACGAAAAATGGTCACACGACTGTGATAATCACCACGCATTACATCGACGA
GTGTGCCCAGGCGCATATGATCGGTCTACTGCGTGGTG

BO11881.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG33970-PA 2334 CG33970-RA 1..772 17..788 3860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:15:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG33970-RC 3989 CG33970-RC 628..1403 13..788 3865 99.9 Plus
CG33970-RA 3387 CG33970-RA 628..1403 13..788 3865 99.9 Plus
CG9990-RG 3586 CG9990-RG 669..1223 223..777 350 71.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26349599..26349864 410..675 1330 100 Plus
3R 32079331 3R 26331404..26331643 13..252 1185 99.6 Plus
3R 32079331 3R 26348914..26349074 253..413 805 100 Plus
3R 32079331 3R 26350078..26350173 674..769 480 100 Plus
3R 32079331 3R 28692548..28692742 557..751 240 74.9 Plus
Blast to na_te.dros performed on 2015-02-12 01:15:19 has no hits.

BO11881.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:33 Download gff for BO11881.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33970-PA 1..772 17..788 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:31 Download gff for BO11881.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33970-PA 1..772 17..788 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:19:46 Download gff for BO11881.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33970-RA 628..1403 13..788 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:18:59 Download gff for BO11881.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33970-RA 628..1403 13..788 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:18:59 Download gff for BO11881.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26331404..26331643 13..252 99 -> Plus
3R 26348914..26349073 253..412 100 -> Plus
3R 26349602..26349864 413..675 100 -> Plus
3R 26350080..26350173 676..769 100 -> Plus
3R 26355600..26355618 770..788 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:19:46 Download gff for BO11881.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22157126..22157365 13..252 99 -> Plus
arm_3R 22174636..22174795 253..412 100 -> Plus
arm_3R 22175324..22175586 413..675 100 -> Plus
arm_3R 22175802..22175895 676..769 100 -> Plus
arm_3R 22181322..22181340 770..788 100   Plus

BO11881.complete Sequence

2365 bp assembled on 2008-01-17

GenBank Submission: FJ632232

> BO11881.complete
GAAGTTATCAGTCGACATGGACGCCGCTGCCGACGGAGTACCGCCAACGG
CGCCAGCTGCGACGGCGACGACGGCCAACAGTGATCTGGACTTGGCGGCA
CGTCGGCGTCTCTTCATCTCACAGCCCTCGACGCTGGCGACGCGCCGCCA
GCAGGCGGTTTGTGTGCGGCGGGCCCACAAAATGTATGGCAGCAGCAAGA
ACCCCAACGTTGTCCTCGACGGCCTGAACATGACAGTGCCCAAGGGTTCC
ATATATGGTCTCTTGGGCGCATCTGGATGCGGGAAAACAACGCTGCTCAG
CTGCATCGTCGGACGACGTCGCCTTAATTCTGGCGAGATTTGGGTACTCG
GCGGGCGACCCGGATCTCGGGGTTCCGGAGTGCCTGGACCCCGGATTGGC
TATATGCCACAGGAGATAGCCCTTTACGGCGAGTTCACGATGCGTGAGAC
CTTAATCTACTTCGGCATCATTTCTGCCATGTCCAAAGGCGACATCGAGG
ATCGTACAGAATTCCTTCTCAAATTACTTAATTTGCCAAATGCCTCCAAA
TTTGTCAAGAATCTGAGTGGCGGCCAGCAGCGGCGAGTGAGTCTGGCGGT
GGCTCTGCTCCATGAGCCGGAGCTACTCATCCTGGATGAGCCCACAGTGG
GGGTGGACCCCGTTTTGCGTCAGAGCATCTGGGATCATTTGGTGGACATT
ACGAAAAATGGTCACACGACTGTGATAATCACCACGCATTACATCGACGA
GTGTGCCCAGGCGCATATGATCGGTCTACTGCGTGGTGGAAAAATGCTGG
CAGAGGAATCGCCGGACTATCTGCGTCAGCAGTATAATGCCGACTCGCTG
GAGGATGTCTTCCTGAAGCTCTCGGTTTTGCAGAACATGGGAAAACGCCG
CCGATCGTCGATAGCTCAGGAAATTGTGGAACAGGTAACGGTGCCGGCGA
TCTCTAATCCCGCCTTGGACATGTCCGATGAGCAGCATGCCGCCGAAATT
TCCGGCGAGTTCGGTGACAACATTTCAATGTCGTCCGCGGCTCGAGATCC
GATCAGTACAACCGCACCCGCAGCTCCGCCTTTGCCACCGCCCCAGGAAA
TACCCACATCCTTCTGGTATAATCTACATGTGATGCAGTCGCATCACCTG
CACGCCCTCATCTGGAAAAACTTCTTGTGGATGATGCGCAACGTGGGGGT
GATGCTGTTCATCGTGGGTCTGCCCGTGGTGCAGATACTGCTCTTCTGTT
ACGCCATCGGCCATGATCCCACTGGCCTCAAATTGGCCGTGGCGAATCAC
GAGATGTCGGGGGAAATGATTATGGAACAATTCTGTCCAGTGCACACCGG
ATGCAATCAGACGATGCTGAGCTGCCGTTATCTCGATATGCTGGTCAAGA
ACAAGAGCATGGTTGTGCAATATGTGACCGACGATGAAATGGCTTACGAA
GAAGTAAGAAAAGGTAGAGCCTGGGCCGCCCTGGTAATCCAACCCAACTA
TACCGCATCTCTGATGGAACGCGTGGAGGATGGTCGGTATGCCGAAGATG
GAACTATTGAGTCCTCGGACCTAGCAGTACGAATGGACTGGTCAAATCAA
CAAATCTCACAGTTGCTGTACCGCGATCTCCAGTACACATTCTTCAACTT
TGTGGGTGACATGCTAAGCGACTGTGATGTGAATCCGAAACTAGGTCGTG
TGCCCGTGGACTTCCAGCATCCTGTTTATGGCTATCGCAATCCCAATTTC
ACAGACTTTGCTGCTCCCGGAGTTATCCTGACGATCATCTTCTTTTTGGC
CGTGGCTGTTACCTCCGGAGCTATGTTAATTGATCGGAATGAGGGCATGT
TGGAGCGTTGTTTGGTAGCTGGAATCACGGGTCCGGAGATTCTTCTCTCC
CAGGTGGTCACCCAGTTCACGGTGATGCTAAGCCAGACGACCTTCGTACT
GATTGTCAGCTTCTACTTCTTCGAACTTACCTTGGTGGGTAACATATGGC
TGGTGGTGGCACTCTGCATCCTGAATGGACTGTGTGGCATGAGCTTCGGA
TTCGTTATTTCCTGTGCTGTGGACACGGAGCGAACTGCGACTTATGTGGC
GATGGGCTCGTTCTTGCCCATCGTTATGTTGTGCGGCATTATCTGGCCGA
TCGAGGGCATGTTCCCGCTTCTGCAGTTCTTCACAGCCTTCCTGCCGCTC
ACCAAACCAACGGAATCAATGCGATCCATACTGCAACGCGGCTGGGGCAT
CGACAATCCCGTCGTCTACAATGGGTTTATTTCCATTTCTTCCTGGGTTC
TGGTATTCCTCGTACTTACCATCCTGCTGCTCAAGTTCAAGAAGGGAGCA
AGCTTTCTAGACCAT

BO11881.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG33970-RC 2334 CG33970-PC 1..2331 17..2347 11655 100 Plus
CG33970-RA 2334 CG33970-PA 1..2331 17..2347 11655 100 Plus
CG33970-RB 1557 CG33970-PB 1..1554 794..2347 7770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG33970-RC 3989 CG33970-RC 628..2962 13..2347 11660 100 Plus
CG33970-RA 3387 CG33970-RA 628..2962 13..2347 11660 100 Plus
CG33970-RB 2072 CG33970-RB 70..1647 770..2347 7890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26360810..26361561 1596..2347 3760 100 Plus
3R 32079331 3R 26355599..26356028 769..1198 2150 100 Plus
3R 32079331 3R 26349599..26349864 410..675 1330 100 Plus
3R 32079331 3R 26331404..26331643 13..252 1185 99.6 Plus
3R 32079331 3R 26356215..26356435 1197..1417 1105 100 Plus
3R 32079331 3R 26360563..26360741 1417..1595 895 100 Plus
3R 32079331 3R 26348914..26349074 253..413 805 100 Plus
3R 32079331 3R 26350078..26350173 674..769 480 100 Plus
3R 32079331 3R 28692548..28692742 557..751 240 74.9 Plus
Blast to na_te.dros performed on 2014-11-28 04:56:36 has no hits.

BO11881.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:29 Download gff for BO11881.complete
Subject Subject Range Query Range Percent Splice Strand
CG33970-RA 1..2334 17..2351 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:32:59 Download gff for BO11881.complete
Subject Subject Range Query Range Percent Splice Strand
CG33970-RA 629..2959 17..2349 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:01 Download gff for BO11881.complete
Subject Subject Range Query Range Percent Splice Strand
CG33970-RA 632..2962 17..2349 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:29 Download gff for BO11881.complete
Subject Subject Range Query Range Percent Splice Strand
CG33970-RA 625..2963 13..2352 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:00:50 Download gff for BO11881.complete
Subject Subject Range Query Range Percent Splice Strand
CG33970-RA 632..2962 17..2349 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:00:50 Download gff for BO11881.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26331408..26331643 17..252 100 -> Plus
3R 26348914..26349073 253..412 100 -> Plus
3R 26349602..26349864 413..675 100 -> Plus
3R 26350080..26350173 676..769 100 -> Plus
3R 26355600..26356027 770..1197 100 -> Plus
3R 26356216..26356435 1198..1417 100 -> Plus
3R 26360564..26360741 1418..1595 100 -> Plus
3R 26360810..26361561 1596..2349 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:01 Download gff for BO11881.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22157130..22157365 17..252 100 -> Plus
arm_3R 22174636..22174795 253..412 100 -> Plus
arm_3R 22175324..22175586 413..675 100 -> Plus
arm_3R 22175802..22175895 676..769 100 -> Plus
arm_3R 22181322..22181749 770..1197 100 -> Plus
arm_3R 22181938..22182157 1198..1417 100 -> Plus
arm_3R 22186286..22186463 1418..1595 100 -> Plus
arm_3R 22186532..22187283 1596..2349 99   Plus

BO11881.pep Sequence

Translation from 16 to 2365

> BO11881.pep
MDAAADGVPPTAPAATATTANSDLDLAARRRLFISQPSTLATRRQQAVCV
RRAHKMYGSSKNPNVVLDGLNMTVPKGSIYGLLGASGCGKTTLLSCIVGR
RRLNSGEIWVLGGRPGSRGSGVPGPRIGYMPQEIALYGEFTMRETLIYFG
IISAMSKGDIEDRTEFLLKLLNLPNASKFVKNLSGGQQRRVSLAVALLHE
PELLILDEPTVGVDPVLRQSIWDHLVDITKNGHTTVIITTHYIDECAQAH
MIGLLRGGKMLAEESPDYLRQQYNADSLEDVFLKLSVLQNMGKRRRSSIA
QEIVEQVTVPAISNPALDMSDEQHAAEISGEFGDNISMSSAARDPISTTA
PAAPPLPPPQEIPTSFWYNLHVMQSHHLHALIWKNFLWMMRNVGVMLFIV
GLPVVQILLFCYAIGHDPTGLKLAVANHEMSGEMIMEQFCPVHTGCNQTM
LSCRYLDMLVKNKSMVVQYVTDDEMAYEEVRKGRAWAALVIQPNYTASLM
ERVEDGRYAEDGTIESSDLAVRMDWSNQQISQLLYRDLQYTFFNFVGDML
SDCDVNPKLGRVPVDFQHPVYGYRNPNFTDFAAPGVILTIIFFLAVAVTS
GAMLIDRNEGMLERCLVAGITGPEILLSQVVTQFTVMLSQTTFVLIVSFY
FFELTLVGNIWLVVALCILNGLCGMSFGFVISCAVDTERTATYVAMGSFL
PIVMLCGIIWPIEGMFPLLQFFTAFLPLTKPTESMRSILQRGWGIDNPVV
YNGFISISSWVLVFLVLTILLLKFKKGASFLDH

BO11881.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:27:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG33970-PC 777 CG33970-PC 1..777 1..777 4028 100 Plus
CG33970-PA 777 CG33970-PA 1..777 1..777 4028 100 Plus
CG33970-PB 518 CG33970-PB 1..518 260..777 2696 100 Plus
CG9990-PD 763 CG9990-PD 4..763 18..777 1867 51.3 Plus
CG9990-PB 777 CG9990-PB 4..777 18..777 1859 50.9 Plus