Clone Sequence Records
BO11881.3prime Sequence
832 bp (827 high quality bases) assembled on 2006-04-19
> BO11881.3prime
ATGGTCTAGAAAGCTTGCTCCCTTCTTGAACTTGAGCAGCAGGATGGTAA
GTACGAGGAATACCAGAACCCAGGAAGAAATGGAAATAAACCCATTGTAG
ACGACGGGATTGTCGATGCCCCAGCCGCGTTGCAGTATGGATCGCATTGA
TTCCGTTGGTTTGGTGAGCGGCAGGAAGGCTGTGAAGAACTGCAGAAGCG
GGAACATGCCCTCGATCGGCCAGATAATGCCGCACAACATAACGATGGGC
AAGAACGAGCCCATCGCCACATAAGTCGCAGTTCGCTCCGTGTCCACAGC
ACAGGAAATAACGAATCCGAAGCTCATGCCACACAGTCCATTCAGGATGC
AGAGTGCCACCACCAGCCATATGTTACCCACCAAGGTAAGTTCGAAGAAG
TAGAAGCTGACAATCAGTACGAAGGTCGTCTGGCTTAGCATCACCGTGAA
CTGGGTGACCACCTGGGAGAGAAGAATCTCCGGACCCGTGATTCCAGCTA
CCAAACAACGCTCCAACATGCCCTCATTCCGATCAATTAACATAGCTCCG
GAGGTAACAGCCACGGCCAAAAAGAAGATGATCGTCAGGATAACTCCGGG
AGCAGCAAAGTCTGTGAAATTGGGATTGCGATAGCCATAAACAGGATGCT
GGAAGTCCACGGGCACACGACCTAGTTTCGGATTCACATCACAGTCGCTT
AGCATGTCACCCACAAAGTTGAAGAATGTGTACTGGAGATCGCGGTACAG
CAACTGTGAGATTTGTTGATTTGACCAGTCCATTCGTACTGCTAGGTCCG
AGGACTCAATAGTTCCATCTTCGGCATACCGA
BO11881.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33970-PA | 2334 | CG33970-RA | 1518..2331 | 832..19 | 4070 | 100 | Minus |
CG33970-PB | 1557 | CG33970-RB | 741..1554 | 832..19 | 4070 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:42:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33970-RC | 3989 | CG33970-RC | 2149..2962 | 832..19 | 4070 | 100 | Minus |
CG33970-RB | 2072 | CG33970-RB | 834..1647 | 832..19 | 4070 | 100 | Minus |
CG33970-RA | 3387 | CG33970-RA | 2149..2962 | 832..19 | 4070 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 18:42:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26360810..26361561 | 770..19 | 3760 | 100 | Minus |
3R | 32079331 | 3R | 26360680..26360741 | 832..771 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 18:42:41 has no hits.
BO11881.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:32 Download gff for
BO11881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33970-PA | 1519..2334 | 15..831 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:29 Download gff for
BO11881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33970-PB | 742..1557 | 15..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:41:36 Download gff for
BO11881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33970-RA | 2150..2966 | 14..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:46:28 Download gff for
BO11881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33970-RA | 2150..2966 | 14..831 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:46:28 Download gff for
BO11881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26360681..26360741 | 771..831 | 100 | -> | Minus |
3R | 26360810..26361565 | 14..770 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:41:36 Download gff for
BO11881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22186403..22186463 | 771..831 | 100 | -> | Minus |
arm_3R | 22186532..22187287 | 14..770 | 99 | | Minus |
BO11881.5prime Sequence
788 bp (786 high quality bases) assembled on 2006-04-19
> BO11881.5prime
GAAGTTATCAGTCGACATGGACGCCGCTGCCGACGGAGTACCGCCAACGG
CGCCAGCTGCGACGGCGACGACGGCCAACAGTGATCTGGACTTGGCGGCA
CGTCGGCGTCTCTTCATCTCACAGCCCTCGACGCTGGCGACGCGCCGCCA
GCAGGCGGTTTGTGTGCGGCGGGCCCACAAAATGTATGGCAGCAGCAAGA
ACCCCAACGTTGTCCTCGACGGCCTGAACATGACAGTGCCCAAGGGTTCC
ATATATGGTCTCTTGGGCGCATCTGGATGCGGGAAAACAACGCTGCTCAG
CTGCATCGTCGGACGACGTCGCCTTAATTCTGGCGAGATTTGGGTACTCG
GCGGGCGACCCGGATCTCGGGGTTCCGGAGTGCCTGGACCCCGGATTGGC
TATATGCCACAGGAGATAGCCCTTTACGGCGAGTTCACGATGCGTGAGAC
CTTAATCTACTTCGGCATCATTTCTGCCATGTCCAAAGGCGACATCGAGG
ATCGTACAGAATTCCTTCTCAAATTACTTAATTTGCCAAATGCCTCCAAA
TTTGTCAAGAATCTGAGTGGCGGCCAGCAGCGGCGAGTGAGTCTGGCGGT
GGCTCTGCTCCATGAGCCGGAGCTACTCATCCTGGATGAGCCCACAGTGG
GGGTGGACCCCGTTTTGCGTCAGAGCATCTGGGATCATTTGGTGGACATT
ACGAAAAATGGTCACACGACTGTGATAATCACCACGCATTACATCGACGA
GTGTGCCCAGGCGCATATGATCGGTCTACTGCGTGGTG
BO11881.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33970-PA | 2334 | CG33970-RA | 1..772 | 17..788 | 3860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:15:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33970-RC | 3989 | CG33970-RC | 628..1403 | 13..788 | 3865 | 99.9 | Plus |
CG33970-RA | 3387 | CG33970-RA | 628..1403 | 13..788 | 3865 | 99.9 | Plus |
CG9990-RG | 3586 | CG9990-RG | 669..1223 | 223..777 | 350 | 71.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:15:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26349599..26349864 | 410..675 | 1330 | 100 | Plus |
3R | 32079331 | 3R | 26331404..26331643 | 13..252 | 1185 | 99.6 | Plus |
3R | 32079331 | 3R | 26348914..26349074 | 253..413 | 805 | 100 | Plus |
3R | 32079331 | 3R | 26350078..26350173 | 674..769 | 480 | 100 | Plus |
3R | 32079331 | 3R | 28692548..28692742 | 557..751 | 240 | 74.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:15:19 has no hits.
BO11881.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:33 Download gff for
BO11881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33970-PA | 1..772 | 17..788 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:31 Download gff for
BO11881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33970-PA | 1..772 | 17..788 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:19:46 Download gff for
BO11881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33970-RA | 628..1403 | 13..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:18:59 Download gff for
BO11881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33970-RA | 628..1403 | 13..788 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:18:59 Download gff for
BO11881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26331404..26331643 | 13..252 | 99 | -> | Plus |
3R | 26348914..26349073 | 253..412 | 100 | -> | Plus |
3R | 26349602..26349864 | 413..675 | 100 | -> | Plus |
3R | 26350080..26350173 | 676..769 | 100 | -> | Plus |
3R | 26355600..26355618 | 770..788 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:19:46 Download gff for
BO11881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22157126..22157365 | 13..252 | 99 | -> | Plus |
arm_3R | 22174636..22174795 | 253..412 | 100 | -> | Plus |
arm_3R | 22175324..22175586 | 413..675 | 100 | -> | Plus |
arm_3R | 22175802..22175895 | 676..769 | 100 | -> | Plus |
arm_3R | 22181322..22181340 | 770..788 | 100 | | Plus |
BO11881.complete Sequence
2365 bp assembled on 2008-01-17
GenBank Submission: FJ632232
> BO11881.complete
GAAGTTATCAGTCGACATGGACGCCGCTGCCGACGGAGTACCGCCAACGG
CGCCAGCTGCGACGGCGACGACGGCCAACAGTGATCTGGACTTGGCGGCA
CGTCGGCGTCTCTTCATCTCACAGCCCTCGACGCTGGCGACGCGCCGCCA
GCAGGCGGTTTGTGTGCGGCGGGCCCACAAAATGTATGGCAGCAGCAAGA
ACCCCAACGTTGTCCTCGACGGCCTGAACATGACAGTGCCCAAGGGTTCC
ATATATGGTCTCTTGGGCGCATCTGGATGCGGGAAAACAACGCTGCTCAG
CTGCATCGTCGGACGACGTCGCCTTAATTCTGGCGAGATTTGGGTACTCG
GCGGGCGACCCGGATCTCGGGGTTCCGGAGTGCCTGGACCCCGGATTGGC
TATATGCCACAGGAGATAGCCCTTTACGGCGAGTTCACGATGCGTGAGAC
CTTAATCTACTTCGGCATCATTTCTGCCATGTCCAAAGGCGACATCGAGG
ATCGTACAGAATTCCTTCTCAAATTACTTAATTTGCCAAATGCCTCCAAA
TTTGTCAAGAATCTGAGTGGCGGCCAGCAGCGGCGAGTGAGTCTGGCGGT
GGCTCTGCTCCATGAGCCGGAGCTACTCATCCTGGATGAGCCCACAGTGG
GGGTGGACCCCGTTTTGCGTCAGAGCATCTGGGATCATTTGGTGGACATT
ACGAAAAATGGTCACACGACTGTGATAATCACCACGCATTACATCGACGA
GTGTGCCCAGGCGCATATGATCGGTCTACTGCGTGGTGGAAAAATGCTGG
CAGAGGAATCGCCGGACTATCTGCGTCAGCAGTATAATGCCGACTCGCTG
GAGGATGTCTTCCTGAAGCTCTCGGTTTTGCAGAACATGGGAAAACGCCG
CCGATCGTCGATAGCTCAGGAAATTGTGGAACAGGTAACGGTGCCGGCGA
TCTCTAATCCCGCCTTGGACATGTCCGATGAGCAGCATGCCGCCGAAATT
TCCGGCGAGTTCGGTGACAACATTTCAATGTCGTCCGCGGCTCGAGATCC
GATCAGTACAACCGCACCCGCAGCTCCGCCTTTGCCACCGCCCCAGGAAA
TACCCACATCCTTCTGGTATAATCTACATGTGATGCAGTCGCATCACCTG
CACGCCCTCATCTGGAAAAACTTCTTGTGGATGATGCGCAACGTGGGGGT
GATGCTGTTCATCGTGGGTCTGCCCGTGGTGCAGATACTGCTCTTCTGTT
ACGCCATCGGCCATGATCCCACTGGCCTCAAATTGGCCGTGGCGAATCAC
GAGATGTCGGGGGAAATGATTATGGAACAATTCTGTCCAGTGCACACCGG
ATGCAATCAGACGATGCTGAGCTGCCGTTATCTCGATATGCTGGTCAAGA
ACAAGAGCATGGTTGTGCAATATGTGACCGACGATGAAATGGCTTACGAA
GAAGTAAGAAAAGGTAGAGCCTGGGCCGCCCTGGTAATCCAACCCAACTA
TACCGCATCTCTGATGGAACGCGTGGAGGATGGTCGGTATGCCGAAGATG
GAACTATTGAGTCCTCGGACCTAGCAGTACGAATGGACTGGTCAAATCAA
CAAATCTCACAGTTGCTGTACCGCGATCTCCAGTACACATTCTTCAACTT
TGTGGGTGACATGCTAAGCGACTGTGATGTGAATCCGAAACTAGGTCGTG
TGCCCGTGGACTTCCAGCATCCTGTTTATGGCTATCGCAATCCCAATTTC
ACAGACTTTGCTGCTCCCGGAGTTATCCTGACGATCATCTTCTTTTTGGC
CGTGGCTGTTACCTCCGGAGCTATGTTAATTGATCGGAATGAGGGCATGT
TGGAGCGTTGTTTGGTAGCTGGAATCACGGGTCCGGAGATTCTTCTCTCC
CAGGTGGTCACCCAGTTCACGGTGATGCTAAGCCAGACGACCTTCGTACT
GATTGTCAGCTTCTACTTCTTCGAACTTACCTTGGTGGGTAACATATGGC
TGGTGGTGGCACTCTGCATCCTGAATGGACTGTGTGGCATGAGCTTCGGA
TTCGTTATTTCCTGTGCTGTGGACACGGAGCGAACTGCGACTTATGTGGC
GATGGGCTCGTTCTTGCCCATCGTTATGTTGTGCGGCATTATCTGGCCGA
TCGAGGGCATGTTCCCGCTTCTGCAGTTCTTCACAGCCTTCCTGCCGCTC
ACCAAACCAACGGAATCAATGCGATCCATACTGCAACGCGGCTGGGGCAT
CGACAATCCCGTCGTCTACAATGGGTTTATTTCCATTTCTTCCTGGGTTC
TGGTATTCCTCGTACTTACCATCCTGCTGCTCAAGTTCAAGAAGGGAGCA
AGCTTTCTAGACCAT
BO11881.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:56:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33970-RC | 2334 | CG33970-PC | 1..2331 | 17..2347 | 11655 | 100 | Plus |
CG33970-RA | 2334 | CG33970-PA | 1..2331 | 17..2347 | 11655 | 100 | Plus |
CG33970-RB | 1557 | CG33970-PB | 1..1554 | 794..2347 | 7770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:56:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33970-RC | 3989 | CG33970-RC | 628..2962 | 13..2347 | 11660 | 100 | Plus |
CG33970-RA | 3387 | CG33970-RA | 628..2962 | 13..2347 | 11660 | 100 | Plus |
CG33970-RB | 2072 | CG33970-RB | 70..1647 | 770..2347 | 7890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:56:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26360810..26361561 | 1596..2347 | 3760 | 100 | Plus |
3R | 32079331 | 3R | 26355599..26356028 | 769..1198 | 2150 | 100 | Plus |
3R | 32079331 | 3R | 26349599..26349864 | 410..675 | 1330 | 100 | Plus |
3R | 32079331 | 3R | 26331404..26331643 | 13..252 | 1185 | 99.6 | Plus |
3R | 32079331 | 3R | 26356215..26356435 | 1197..1417 | 1105 | 100 | Plus |
3R | 32079331 | 3R | 26360563..26360741 | 1417..1595 | 895 | 100 | Plus |
3R | 32079331 | 3R | 26348914..26349074 | 253..413 | 805 | 100 | Plus |
3R | 32079331 | 3R | 26350078..26350173 | 674..769 | 480 | 100 | Plus |
3R | 32079331 | 3R | 28692548..28692742 | 557..751 | 240 | 74.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:56:36 has no hits.
BO11881.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:29 Download gff for
BO11881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33970-RA | 1..2334 | 17..2351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:32:59 Download gff for
BO11881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33970-RA | 629..2959 | 17..2349 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:01 Download gff for
BO11881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33970-RA | 632..2962 | 17..2349 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:29 Download gff for
BO11881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33970-RA | 625..2963 | 13..2352 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:00:50 Download gff for
BO11881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33970-RA | 632..2962 | 17..2349 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:00:50 Download gff for
BO11881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26331408..26331643 | 17..252 | 100 | -> | Plus |
3R | 26348914..26349073 | 253..412 | 100 | -> | Plus |
3R | 26349602..26349864 | 413..675 | 100 | -> | Plus |
3R | 26350080..26350173 | 676..769 | 100 | -> | Plus |
3R | 26355600..26356027 | 770..1197 | 100 | -> | Plus |
3R | 26356216..26356435 | 1198..1417 | 100 | -> | Plus |
3R | 26360564..26360741 | 1418..1595 | 100 | -> | Plus |
3R | 26360810..26361561 | 1596..2349 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:01 Download gff for
BO11881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22157130..22157365 | 17..252 | 100 | -> | Plus |
arm_3R | 22174636..22174795 | 253..412 | 100 | -> | Plus |
arm_3R | 22175324..22175586 | 413..675 | 100 | -> | Plus |
arm_3R | 22175802..22175895 | 676..769 | 100 | -> | Plus |
arm_3R | 22181322..22181749 | 770..1197 | 100 | -> | Plus |
arm_3R | 22181938..22182157 | 1198..1417 | 100 | -> | Plus |
arm_3R | 22186286..22186463 | 1418..1595 | 100 | -> | Plus |
arm_3R | 22186532..22187283 | 1596..2349 | 99 | | Plus |
BO11881.pep Sequence
Translation from 16 to 2365
> BO11881.pep
MDAAADGVPPTAPAATATTANSDLDLAARRRLFISQPSTLATRRQQAVCV
RRAHKMYGSSKNPNVVLDGLNMTVPKGSIYGLLGASGCGKTTLLSCIVGR
RRLNSGEIWVLGGRPGSRGSGVPGPRIGYMPQEIALYGEFTMRETLIYFG
IISAMSKGDIEDRTEFLLKLLNLPNASKFVKNLSGGQQRRVSLAVALLHE
PELLILDEPTVGVDPVLRQSIWDHLVDITKNGHTTVIITTHYIDECAQAH
MIGLLRGGKMLAEESPDYLRQQYNADSLEDVFLKLSVLQNMGKRRRSSIA
QEIVEQVTVPAISNPALDMSDEQHAAEISGEFGDNISMSSAARDPISTTA
PAAPPLPPPQEIPTSFWYNLHVMQSHHLHALIWKNFLWMMRNVGVMLFIV
GLPVVQILLFCYAIGHDPTGLKLAVANHEMSGEMIMEQFCPVHTGCNQTM
LSCRYLDMLVKNKSMVVQYVTDDEMAYEEVRKGRAWAALVIQPNYTASLM
ERVEDGRYAEDGTIESSDLAVRMDWSNQQISQLLYRDLQYTFFNFVGDML
SDCDVNPKLGRVPVDFQHPVYGYRNPNFTDFAAPGVILTIIFFLAVAVTS
GAMLIDRNEGMLERCLVAGITGPEILLSQVVTQFTVMLSQTTFVLIVSFY
FFELTLVGNIWLVVALCILNGLCGMSFGFVISCAVDTERTATYVAMGSFL
PIVMLCGIIWPIEGMFPLLQFFTAFLPLTKPTESMRSILQRGWGIDNPVV
YNGFISISSWVLVFLVLTILLLKFKKGASFLDH
BO11881.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:27:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33970-PC | 777 | CG33970-PC | 1..777 | 1..777 | 4028 | 100 | Plus |
CG33970-PA | 777 | CG33970-PA | 1..777 | 1..777 | 4028 | 100 | Plus |
CG33970-PB | 518 | CG33970-PB | 1..518 | 260..777 | 2696 | 100 | Plus |
CG9990-PD | 763 | CG9990-PD | 4..763 | 18..777 | 1867 | 51.3 | Plus |
CG9990-PB | 777 | CG9990-PB | 4..777 | 18..777 | 1859 | 50.9 | Plus |