Clone Sequence Records
BO11882.3prime Sequence
869 bp (793 high quality bases) assembled on 2006-04-19
> BO11882.3prime
ATGGTCTAGAAAGCTTGCGTTGCGCTCTCTGTGCAATTTCTCTGTCTCCG
CCCGCAAGTCCCGAAAGGCTTCCTGGATTTTGTCTGTAATGAGCTTCCGC
GCCGTTGGCTCCGGTACTTGTCGTTTTTTTAGGTCCAGAATAAAGTCGTT
GAGGTCCAATGGCTGGCCAACATTCAGCGTCACCTGCTTACCACGCTGTA
TCACATAGGGCTCCACATTGGGCAACAGATCGTCCATGCCCTCGTGCCAC
ATGGGCAGAATTATGGGGATCTTTGGCGACTCGTAGATGATCCTGCCCAC
GCCCCACTTGAGACGCAGCTCCTCCTTATCCATGTTCACCTTACCTTCGG
GAAACACATGGATCCAATGGCCCAGTGCGGCCTTCTCGATGCACAGGTTG
ATGGCATCCTGGTAGACACCGATGCCACGCACAACAGGTATGCACTTGCC
AAACATGAAGAAGAGCGAGTGCAGCTTGTTAGTGAAGCAAATGTCGTGAG
CGGCCATTGACCAACGAATTTTATAGGTATTGCAGACAATTCCCAGGGGA
AGGCAGCCCCACAGCCCAGGATCGTCGAAGCAGGAGTAGTGGTTGGACAC
GGTGACCAGGGGAATGCCCTTGGGTCGCTTCGTTATCAGCTGGATCAGTC
GCTCCCTGTTATAGACGCGGGGTTTATTCAAAAACATCAGCACAACCTTG
CTGAAGATTCCAACGGCGGAGACGACGAACTGGCTGACCACGTACCAGAA
CTTCGAGGGGTTTCTCAGCCTAGGGAATATCCAGTCGATGTTTGTAAGGC
ATCGCCACGCCGGTGGGCACATCCAGGGAGGGATCAGCATCCTGGTCGGA
AATTGGGGGCGAAAGGAAA
BO11882.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8766-PA | 1137 | tafazzin-RA | 361..1134 | 792..19 | 3870 | 100 | Minus |
CG8766-PC | 1017 | tafazzin-RC | 241..1014 | 792..19 | 3870 | 100 | Minus |
CG8766-PB | 837 | tafazzin-RB | 61..834 | 792..19 | 3870 | 100 | Minus |
CG8766-PA | 1137 | tafazzin-RA | 293..362 | 861..792 | 300 | 97.1 | Minus |
CG8766-PC | 1017 | tafazzin-RC | 173..242 | 861..792 | 300 | 97.1 | Minus |
CG8766-PB | 837 | tafazzin-RB | 4..62 | 850..792 | 270 | 98.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-07 01:51:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Taz-RD | 1323 | CG8766-RD | 267..1113 | 866..19 | 4170 | 99.5 | Minus |
Taz-RC | 1174 | CG8766-RC | 235..1081 | 866..19 | 4170 | 99.5 | Minus |
Taz-RB | 1625 | CG8766-RB | 493..1339 | 866..19 | 4170 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-07 01:51:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12753427..12753817 | 60..450 | 1955 | 100 | Plus |
2R | 25286936 | 2R | 12753890..12754127 | 449..686 | 1190 | 100 | Plus |
2R | 25286936 | 2R | 12754408..12754586 | 687..866 | 805 | 97.8 | Plus |
2R | 25286936 | 2R | 12753312..12753354 | 19..61 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-07 01:51:12 has no hits.
BO11882.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:34 Download gff for
BO11882.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8766-PC | 168..1017 | 18..866 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:32 Download gff for
BO11882.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8766-PB | 1..837 | 18..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 11:22:53 Download gff for
BO11882.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taz-RB | 493..1339 | 19..866 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-07 06:01:13 Download gff for
BO11882.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taz-RB | 493..1339 | 19..866 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-07 06:01:13 Download gff for
BO11882.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12753312..12753353 | 19..60 | 100 | <- | Plus |
2R | 12753428..12753816 | 61..449 | 100 | <- | Plus |
2R | 12753891..12754127 | 450..686 | 100 | <- | Plus |
2R | 12754408..12754586 | 687..866 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 11:22:53 Download gff for
BO11882.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8640817..8640858 | 19..60 | 100 | <- | Plus |
arm_2R | 8640933..8641321 | 61..449 | 100 | <- | Plus |
arm_2R | 8641396..8641632 | 450..686 | 100 | <- | Plus |
arm_2R | 8641913..8642091 | 687..866 | 97 | | Plus |
BO11882.5prime Sequence
821 bp (766 high quality bases) assembled on 2006-04-19
> BO11882.5prime
GAAGTTATCAGTCGACATGTTTATGGTCGTGTGTTCCAATTTAAGGCGTC
CCGGGCACGTGGGCGCCGCATCTGCAGCGCGAAATATAAACTGGCTGATC
AGCGAGGGATATACACCGCCGATCCGGGCAATGGCGCGGCCATACGTCCA
AGCTCCGGAGGCGCGGCCAGTGCCCGATGAGCGCTATCCGGGCAGCCAGC
AGGATAGGAAGGATATCGCCACCCAGACTGTGCGGAGCAGCAAGCCCAAA
GACCTGCGACCGCCTTCGCCGCCGACGCCGTCCCAGACCCTAAACTCCTC
TTCCCTTCCGCCCCCAATGTCCGACCAGGATGCTGATCCCTCCCTGGATG
TGCCCACCGGCGTGGCGATGCCCTACAACATCGACTGGATATTCCCTAGG
CTGAGAAACCCCTCGAAGTTCTGGTACGTGGTCAGCCAGTTCGTCGTCTC
CGCCGTTGGAATCTTCAGCAAGGTTGTGCTGATGTTTTTGAATAAACCCC
GCGTCTATAACAGGGAGCGACTGATCCAGCTGATAACGAAGCGACCCAAG
GGCATTCCCCTGGTCACCGTGTCCAACCACTACTCCTGCTTCGACGATCC
TGGGCTGTGGGGCTGCCTTCCCCTGGGAATTGTCTGCAATACCTATAAAA
TTCGTTGGTCAATGGCCGCTCACGACATTTGCTTCACTAACAAGCTGCAC
TCGCTCTTCTTCATGTTTGGCAAGTGCATACCTGTTGTGCGTGGCATCGG
TGTCTACCAGGATGCCATCAACCTGTGCATCGAGAAGGCCGCACTGGGCC
CTTGGATCCATGTGTTTCCCG
BO11882.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8766-PA | 1137 | tafazzin-RA | 1..805 | 17..821 | 4000 | 99.8 | Plus |
CG8766-PC | 1017 | tafazzin-RC | 3..685 | 139..821 | 3390 | 99.8 | Plus |
CG8766-PB | 837 | tafazzin-RB | 1..505 | 317..821 | 2500 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:48:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Taz-RA | 1776 | CG8766-RA | 357..1161 | 17..821 | 4010 | 99.9 | Plus |
Taz-RC | 1174 | CG8766-RC | 70..752 | 139..821 | 3400 | 99.9 | Plus |
Taz-RD | 1323 | CG8766-RD | 103..784 | 140..821 | 3395 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:48:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12754408..12754751 | 482..139 | 1720 | 100 | Minus |
2R | 25286936 | 2R | 12753890..12754127 | 720..483 | 1190 | 100 | Minus |
2R | 25286936 | 2R | 12755936..12756058 | 139..17 | 615 | 100 | Minus |
2R | 25286936 | 2R | 12753715..12753817 | 821..719 | 500 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:48:50 has no hits.
BO11882.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:35 Download gff for
BO11882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8766-PA | 1..805 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:33 Download gff for
BO11882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8766-PA | 1..805 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:14:13 Download gff for
BO11882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taz-RA | 351..1161 | 11..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:23:59 Download gff for
BO11882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taz-RA | 351..1161 | 11..821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:23:59 Download gff for
BO11882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12753715..12753816 | 720..821 | 99 | <- | Minus |
2R | 12753891..12754127 | 483..719 | 100 | <- | Minus |
2R | 12754408..12754750 | 140..482 | 100 | <- | Minus |
2R | 12755936..12756064 | 11..139 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:14:13 Download gff for
BO11882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8641220..8641321 | 720..821 | 99 | <- | Minus |
arm_2R | 8641396..8641632 | 483..719 | 100 | <- | Minus |
arm_2R | 8641913..8642255 | 140..482 | 100 | <- | Minus |
arm_2R | 8643441..8643569 | 11..139 | 98 | | Minus |
BO11882.complete Sequence
1168 bp assembled on 2006-10-11
GenBank Submission: FJ632233
> BO11882.complete
GAAGTTATCAGTCGACATGTTTATGGTCGTGTGTTCCAATTTAAGGCGTC
CCGGGCACGTGGGCGCCGCATCTGCAGCGCGAAATATAAACTGGCTGATC
AGCGAGGGATATACACCGCCGATCCGGGCAATGGCGCGGCCATACGTCCA
AGCTCCGGAGGCGCGGCCAGTGCCCGATGAGCGCTATCCGGGCAGCCAGC
AGGATAGGAAGGATATCGCCACCCAGACTGTGCGGAGCAGCAAGCCCAAA
GACCTGCGACCGCCTTCGCCGCCGACGCCGTCCCAGACCCTAAACTCCTC
TTCCCTTCCGCCCCCAATGTCCGACCAGGATGCTGATCCCTCCCTGGATG
TGCCCACCGGCGTGGCGATGCCCTACAACATCGACTGGATATTCCCTAGG
CTGAGAAACCCCTCGAAGTTCTGGTACGTGGTCAGCCAGTTCGTCGTCTC
CGCCGTTGGAATCTTCAGCAAGGTTGTGCTGATGTTTTTGAATAAACCCC
GCGTCTATAACAGGGAGCGACTGATCCAGCTGATAACGAAGCGACCCAAG
GGCATTCCCCTGGTCACCGTGTCCAACCACTACTCCTGCTTCGACGATCC
TGGGCTGTGGGGCTGCCTTCCCCTGGGAATTGTCTGCAATACCTATAAAA
TTCGTTGGTCAATGGCCGCTCACGACATTTGCTTCACTAACAAGCTGCAC
TCGCTCTTCTTCATGTTTGGCAAGTGCATACCTGTTGTGCGTGGCATCGG
TGTCTACCAGGATGCCATCAACCTGTGCATCGAGAAGGCCGCACTGGGCC
ATTGGATCCATGTGTTTCCCGAAGGTAAGGTGAACATGGATAAGGAGGAG
CTGCGTCTCAAGTGGGGCGTGGGCAGGATCATCTACGAGTCGCCAAAGAT
CCCCATAATTCTGCCCATGTGGCACGAGGGCATGGACGATCTGTTGCCCA
ATGTGGAGCCCTATGTGATACAGCGTGGTAAGCAGGTGACGCTGAATGTT
GGCCAGCCATTGGACCTCAACGACTTTATTCTGGACCTAAAAAAACGACA
AGTACCGGAGCCAACGGCGCGGAAGCTCATTACAGACAAAATCCAGGAAG
CCTTTCGGGACTTGCGGGCGGAGACAGAGAAATTGCACAGAGAGCGCAAC
GCAAGCTTTCTAGACCAT
BO11882.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:47:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Taz-RA | 1137 | CG8766-PA | 1..1134 | 17..1150 | 5670 | 100 | Plus |
Taz-RC | 1017 | CG8766-PC | 3..1014 | 139..1150 | 5060 | 100 | Plus |
Taz-RD | 837 | CG8766-PD | 1..834 | 317..1150 | 4170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:47:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Taz-RA | 1776 | CG8766-RA | 357..1490 | 17..1150 | 5670 | 100 | Plus |
Taz-RC | 1174 | CG8766-RC | 70..1081 | 139..1150 | 5060 | 100 | Plus |
Taz-RD | 1323 | CG8766-RD | 103..1113 | 140..1150 | 5055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:47:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12753427..12753817 | 1109..719 | 1955 | 100 | Minus |
2R | 25286936 | 2R | 12754408..12754751 | 482..139 | 1720 | 100 | Minus |
2R | 25286936 | 2R | 12753890..12754127 | 720..483 | 1190 | 100 | Minus |
2R | 25286936 | 2R | 12755936..12756058 | 139..17 | 615 | 100 | Minus |
2R | 25286936 | 2R | 12753312..12753354 | 1150..1108 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:47:25 has no hits.
BO11882.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:19 Download gff for
BO11882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tafazzin-RA | 1..1137 | 17..1151 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:14:04 Download gff for
BO11882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tafazzin-RA | 347..1486 | 11..1150 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:24:35 Download gff for
BO11882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taz-RA | 363..1490 | 23..1152 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:19 Download gff for
BO11882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tafazzin-RA | 347..1486 | 11..1150 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:38 Download gff for
BO11882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taz-RA | 363..1490 | 23..1152 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:38 Download gff for
BO11882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12753310..12753353 | 1109..1152 | 95 | <- | Minus |
2R | 12753428..12753816 | 720..1108 | 100 | <- | Minus |
2R | 12753891..12754127 | 483..719 | 100 | <- | Minus |
2R | 12754408..12754750 | 140..482 | 100 | <- | Minus |
2R | 12755936..12756052 | 23..139 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:24:35 Download gff for
BO11882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8640815..8640858 | 1109..1152 | 95 | <- | Minus |
arm_2R | 8640933..8641321 | 720..1108 | 100 | <- | Minus |
arm_2R | 8641396..8641632 | 483..719 | 100 | <- | Minus |
arm_2R | 8641913..8642255 | 140..482 | 100 | <- | Minus |
arm_2R | 8643441..8643557 | 23..139 | 100 | | Minus |
BO11882.pep Sequence
Translation from 16 to 1168
> BO11882.pep
MFMVVCSNLRRPGHVGAASAARNINWLISEGYTPPIRAMARPYVQAPEAR
PVPDERYPGSQQDRKDIATQTVRSSKPKDLRPPSPPTPSQTLNSSSLPPP
MSDQDADPSLDVPTGVAMPYNIDWIFPRLRNPSKFWYVVSQFVVSAVGIF
SKVVLMFLNKPRVYNRERLIQLITKRPKGIPLVTVSNHYSCFDDPGLWGC
LPLGIVCNTYKIRWSMAAHDICFTNKLHSLFFMFGKCIPVVRGIGVYQDA
INLCIEKAALGHWIHVFPEGKVNMDKEELRLKWGVGRIIYESPKIPIILP
MWHEGMDDLLPNVEPYVIQRGKQVTLNVGQPLDLNDFILDLKKRQVPEPT
ARKLITDKIQEAFRDLRAETEKLHRERNASFLDH
BO11882.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:38:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Taz-PA | 378 | CG8766-PA | 1..378 | 1..378 | 2027 | 100 | Plus |
Taz-PC | 338 | CG8766-PC | 2..338 | 42..378 | 1811 | 100 | Plus |
Taz-PD | 278 | CG8766-PD | 1..278 | 101..378 | 1496 | 100 | Plus |
Taz-PB | 278 | CG8766-PB | 1..278 | 101..378 | 1496 | 100 | Plus |