Clone BO11882 Report

Search the DGRC for BO11882

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:118
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptTaz-RA
Protein status:BO11882.pep: validated full length
Sequenced Size:1168

Clone Sequence Records

BO11882.3prime Sequence

869 bp (793 high quality bases) assembled on 2006-04-19

> BO11882.3prime
ATGGTCTAGAAAGCTTGCGTTGCGCTCTCTGTGCAATTTCTCTGTCTCCG
CCCGCAAGTCCCGAAAGGCTTCCTGGATTTTGTCTGTAATGAGCTTCCGC
GCCGTTGGCTCCGGTACTTGTCGTTTTTTTAGGTCCAGAATAAAGTCGTT
GAGGTCCAATGGCTGGCCAACATTCAGCGTCACCTGCTTACCACGCTGTA
TCACATAGGGCTCCACATTGGGCAACAGATCGTCCATGCCCTCGTGCCAC
ATGGGCAGAATTATGGGGATCTTTGGCGACTCGTAGATGATCCTGCCCAC
GCCCCACTTGAGACGCAGCTCCTCCTTATCCATGTTCACCTTACCTTCGG
GAAACACATGGATCCAATGGCCCAGTGCGGCCTTCTCGATGCACAGGTTG
ATGGCATCCTGGTAGACACCGATGCCACGCACAACAGGTATGCACTTGCC
AAACATGAAGAAGAGCGAGTGCAGCTTGTTAGTGAAGCAAATGTCGTGAG
CGGCCATTGACCAACGAATTTTATAGGTATTGCAGACAATTCCCAGGGGA
AGGCAGCCCCACAGCCCAGGATCGTCGAAGCAGGAGTAGTGGTTGGACAC
GGTGACCAGGGGAATGCCCTTGGGTCGCTTCGTTATCAGCTGGATCAGTC
GCTCCCTGTTATAGACGCGGGGTTTATTCAAAAACATCAGCACAACCTTG
CTGAAGATTCCAACGGCGGAGACGACGAACTGGCTGACCACGTACCAGAA
CTTCGAGGGGTTTCTCAGCCTAGGGAATATCCAGTCGATGTTTGTAAGGC
ATCGCCACGCCGGTGGGCACATCCAGGGAGGGATCAGCATCCTGGTCGGA
AATTGGGGGCGAAAGGAAA

BO11882.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG8766-PA 1137 tafazzin-RA 361..1134 792..19 3870 100 Minus
CG8766-PC 1017 tafazzin-RC 241..1014 792..19 3870 100 Minus
CG8766-PB 837 tafazzin-RB 61..834 792..19 3870 100 Minus
CG8766-PA 1137 tafazzin-RA 293..362 861..792 300 97.1 Minus
CG8766-PC 1017 tafazzin-RC 173..242 861..792 300 97.1 Minus
CG8766-PB 837 tafazzin-RB 4..62 850..792 270 98.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-07 01:51:14
Subject Length Description Subject Range Query Range Score Percent Strand
Taz-RD 1323 CG8766-RD 267..1113 866..19 4170 99.5 Minus
Taz-RC 1174 CG8766-RC 235..1081 866..19 4170 99.5 Minus
Taz-RB 1625 CG8766-RB 493..1339 866..19 4170 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-07 01:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12753427..12753817 60..450 1955 100 Plus
2R 25286936 2R 12753890..12754127 449..686 1190 100 Plus
2R 25286936 2R 12754408..12754586 687..866 805 97.8 Plus
2R 25286936 2R 12753312..12753354 19..61 215 100 Plus
Blast to na_te.dros performed on 2015-02-07 01:51:12 has no hits.

BO11882.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:34 Download gff for BO11882.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8766-PC 168..1017 18..866 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:32 Download gff for BO11882.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8766-PB 1..837 18..853 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 11:22:53 Download gff for BO11882.3prime
Subject Subject Range Query Range Percent Splice Strand
Taz-RB 493..1339 19..866 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-07 06:01:13 Download gff for BO11882.3prime
Subject Subject Range Query Range Percent Splice Strand
Taz-RB 493..1339 19..866 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-07 06:01:13 Download gff for BO11882.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12753312..12753353 19..60 100 <- Plus
2R 12753428..12753816 61..449 100 <- Plus
2R 12753891..12754127 450..686 100 <- Plus
2R 12754408..12754586 687..866 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 11:22:53 Download gff for BO11882.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8640817..8640858 19..60 100 <- Plus
arm_2R 8640933..8641321 61..449 100 <- Plus
arm_2R 8641396..8641632 450..686 100 <- Plus
arm_2R 8641913..8642091 687..866 97   Plus

BO11882.5prime Sequence

821 bp (766 high quality bases) assembled on 2006-04-19

> BO11882.5prime
GAAGTTATCAGTCGACATGTTTATGGTCGTGTGTTCCAATTTAAGGCGTC
CCGGGCACGTGGGCGCCGCATCTGCAGCGCGAAATATAAACTGGCTGATC
AGCGAGGGATATACACCGCCGATCCGGGCAATGGCGCGGCCATACGTCCA
AGCTCCGGAGGCGCGGCCAGTGCCCGATGAGCGCTATCCGGGCAGCCAGC
AGGATAGGAAGGATATCGCCACCCAGACTGTGCGGAGCAGCAAGCCCAAA
GACCTGCGACCGCCTTCGCCGCCGACGCCGTCCCAGACCCTAAACTCCTC
TTCCCTTCCGCCCCCAATGTCCGACCAGGATGCTGATCCCTCCCTGGATG
TGCCCACCGGCGTGGCGATGCCCTACAACATCGACTGGATATTCCCTAGG
CTGAGAAACCCCTCGAAGTTCTGGTACGTGGTCAGCCAGTTCGTCGTCTC
CGCCGTTGGAATCTTCAGCAAGGTTGTGCTGATGTTTTTGAATAAACCCC
GCGTCTATAACAGGGAGCGACTGATCCAGCTGATAACGAAGCGACCCAAG
GGCATTCCCCTGGTCACCGTGTCCAACCACTACTCCTGCTTCGACGATCC
TGGGCTGTGGGGCTGCCTTCCCCTGGGAATTGTCTGCAATACCTATAAAA
TTCGTTGGTCAATGGCCGCTCACGACATTTGCTTCACTAACAAGCTGCAC
TCGCTCTTCTTCATGTTTGGCAAGTGCATACCTGTTGTGCGTGGCATCGG
TGTCTACCAGGATGCCATCAACCTGTGCATCGAGAAGGCCGCACTGGGCC
CTTGGATCCATGTGTTTCCCG

BO11882.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG8766-PA 1137 tafazzin-RA 1..805 17..821 4000 99.8 Plus
CG8766-PC 1017 tafazzin-RC 3..685 139..821 3390 99.8 Plus
CG8766-PB 837 tafazzin-RB 1..505 317..821 2500 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:48:53
Subject Length Description Subject Range Query Range Score Percent Strand
Taz-RA 1776 CG8766-RA 357..1161 17..821 4010 99.9 Plus
Taz-RC 1174 CG8766-RC 70..752 139..821 3400 99.9 Plus
Taz-RD 1323 CG8766-RD 103..784 140..821 3395 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:48:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12754408..12754751 482..139 1720 100 Minus
2R 25286936 2R 12753890..12754127 720..483 1190 100 Minus
2R 25286936 2R 12755936..12756058 139..17 615 100 Minus
2R 25286936 2R 12753715..12753817 821..719 500 99 Minus
Blast to na_te.dros performed on 2015-02-13 01:48:50 has no hits.

BO11882.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:35 Download gff for BO11882.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8766-PA 1..805 17..821 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:33 Download gff for BO11882.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8766-PA 1..805 17..821 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:14:13 Download gff for BO11882.5prime
Subject Subject Range Query Range Percent Splice Strand
Taz-RA 351..1161 11..821 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:23:59 Download gff for BO11882.5prime
Subject Subject Range Query Range Percent Splice Strand
Taz-RA 351..1161 11..821 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:23:59 Download gff for BO11882.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12753715..12753816 720..821 99 <- Minus
2R 12753891..12754127 483..719 100 <- Minus
2R 12754408..12754750 140..482 100 <- Minus
2R 12755936..12756064 11..139 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:14:13 Download gff for BO11882.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8641220..8641321 720..821 99 <- Minus
arm_2R 8641396..8641632 483..719 100 <- Minus
arm_2R 8641913..8642255 140..482 100 <- Minus
arm_2R 8643441..8643569 11..139 98   Minus

BO11882.complete Sequence

1168 bp assembled on 2006-10-11

GenBank Submission: FJ632233

> BO11882.complete
GAAGTTATCAGTCGACATGTTTATGGTCGTGTGTTCCAATTTAAGGCGTC
CCGGGCACGTGGGCGCCGCATCTGCAGCGCGAAATATAAACTGGCTGATC
AGCGAGGGATATACACCGCCGATCCGGGCAATGGCGCGGCCATACGTCCA
AGCTCCGGAGGCGCGGCCAGTGCCCGATGAGCGCTATCCGGGCAGCCAGC
AGGATAGGAAGGATATCGCCACCCAGACTGTGCGGAGCAGCAAGCCCAAA
GACCTGCGACCGCCTTCGCCGCCGACGCCGTCCCAGACCCTAAACTCCTC
TTCCCTTCCGCCCCCAATGTCCGACCAGGATGCTGATCCCTCCCTGGATG
TGCCCACCGGCGTGGCGATGCCCTACAACATCGACTGGATATTCCCTAGG
CTGAGAAACCCCTCGAAGTTCTGGTACGTGGTCAGCCAGTTCGTCGTCTC
CGCCGTTGGAATCTTCAGCAAGGTTGTGCTGATGTTTTTGAATAAACCCC
GCGTCTATAACAGGGAGCGACTGATCCAGCTGATAACGAAGCGACCCAAG
GGCATTCCCCTGGTCACCGTGTCCAACCACTACTCCTGCTTCGACGATCC
TGGGCTGTGGGGCTGCCTTCCCCTGGGAATTGTCTGCAATACCTATAAAA
TTCGTTGGTCAATGGCCGCTCACGACATTTGCTTCACTAACAAGCTGCAC
TCGCTCTTCTTCATGTTTGGCAAGTGCATACCTGTTGTGCGTGGCATCGG
TGTCTACCAGGATGCCATCAACCTGTGCATCGAGAAGGCCGCACTGGGCC
ATTGGATCCATGTGTTTCCCGAAGGTAAGGTGAACATGGATAAGGAGGAG
CTGCGTCTCAAGTGGGGCGTGGGCAGGATCATCTACGAGTCGCCAAAGAT
CCCCATAATTCTGCCCATGTGGCACGAGGGCATGGACGATCTGTTGCCCA
ATGTGGAGCCCTATGTGATACAGCGTGGTAAGCAGGTGACGCTGAATGTT
GGCCAGCCATTGGACCTCAACGACTTTATTCTGGACCTAAAAAAACGACA
AGTACCGGAGCCAACGGCGCGGAAGCTCATTACAGACAAAATCCAGGAAG
CCTTTCGGGACTTGCGGGCGGAGACAGAGAAATTGCACAGAGAGCGCAAC
GCAAGCTTTCTAGACCAT

BO11882.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
Taz-RA 1137 CG8766-PA 1..1134 17..1150 5670 100 Plus
Taz-RC 1017 CG8766-PC 3..1014 139..1150 5060 100 Plus
Taz-RD 837 CG8766-PD 1..834 317..1150 4170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
Taz-RA 1776 CG8766-RA 357..1490 17..1150 5670 100 Plus
Taz-RC 1174 CG8766-RC 70..1081 139..1150 5060 100 Plus
Taz-RD 1323 CG8766-RD 103..1113 140..1150 5055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12753427..12753817 1109..719 1955 100 Minus
2R 25286936 2R 12754408..12754751 482..139 1720 100 Minus
2R 25286936 2R 12753890..12754127 720..483 1190 100 Minus
2R 25286936 2R 12755936..12756058 139..17 615 100 Minus
2R 25286936 2R 12753312..12753354 1150..1108 215 100 Minus
Blast to na_te.dros performed on 2014-11-27 12:47:25 has no hits.

BO11882.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:19 Download gff for BO11882.complete
Subject Subject Range Query Range Percent Splice Strand
tafazzin-RA 1..1137 17..1151 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:14:04 Download gff for BO11882.complete
Subject Subject Range Query Range Percent Splice Strand
tafazzin-RA 347..1486 11..1150 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:24:35 Download gff for BO11882.complete
Subject Subject Range Query Range Percent Splice Strand
Taz-RA 363..1490 23..1152 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:19 Download gff for BO11882.complete
Subject Subject Range Query Range Percent Splice Strand
tafazzin-RA 347..1486 11..1150 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:38 Download gff for BO11882.complete
Subject Subject Range Query Range Percent Splice Strand
Taz-RA 363..1490 23..1152 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:38 Download gff for BO11882.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12753310..12753353 1109..1152 95 <- Minus
2R 12753428..12753816 720..1108 100 <- Minus
2R 12753891..12754127 483..719 100 <- Minus
2R 12754408..12754750 140..482 100 <- Minus
2R 12755936..12756052 23..139 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:24:35 Download gff for BO11882.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8640815..8640858 1109..1152 95 <- Minus
arm_2R 8640933..8641321 720..1108 100 <- Minus
arm_2R 8641396..8641632 483..719 100 <- Minus
arm_2R 8641913..8642255 140..482 100 <- Minus
arm_2R 8643441..8643557 23..139 100   Minus

BO11882.pep Sequence

Translation from 16 to 1168

> BO11882.pep
MFMVVCSNLRRPGHVGAASAARNINWLISEGYTPPIRAMARPYVQAPEAR
PVPDERYPGSQQDRKDIATQTVRSSKPKDLRPPSPPTPSQTLNSSSLPPP
MSDQDADPSLDVPTGVAMPYNIDWIFPRLRNPSKFWYVVSQFVVSAVGIF
SKVVLMFLNKPRVYNRERLIQLITKRPKGIPLVTVSNHYSCFDDPGLWGC
LPLGIVCNTYKIRWSMAAHDICFTNKLHSLFFMFGKCIPVVRGIGVYQDA
INLCIEKAALGHWIHVFPEGKVNMDKEELRLKWGVGRIIYESPKIPIILP
MWHEGMDDLLPNVEPYVIQRGKQVTLNVGQPLDLNDFILDLKKRQVPEPT
ARKLITDKIQEAFRDLRAETEKLHRERNASFLDH

BO11882.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
Taz-PA 378 CG8766-PA 1..378 1..378 2027 100 Plus
Taz-PC 338 CG8766-PC 2..338 42..378 1811 100 Plus
Taz-PD 278 CG8766-PD 1..278 101..378 1496 100 Plus
Taz-PB 278 CG8766-PB 1..278 101..378 1496 100 Plus