Clone BO11883 Report

Search the DGRC for BO11883

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:118
Well:83
Vector:pDNR-Dual
Associated Gene/Transcriptmago-RA
Protein status:BO11883.pep:
Sequenced Size:475

Clone Sequence Records

BO11883.3prime Sequence

473 bp (472 high quality bases) assembled on 2006-04-19

> BO11883.3prime
ATGGTCTAGAAAGCTTGCTATGGGCTTGATCTTGAAATGCAGGCCGATGA
GTGAGAAGACCAGGCACTTGAGATCCTGCACCAGGTAGTAAAAGCATCGC
AGGCCCTCGGGATCTTTTGACCGGTTCACGTCCACCAATGATCCCGTTTT
CGAGGTGGTGAACGAGATGTGCTCGTCTCCGATGACGATCTCCAGTTCCT
GTCGACCCACGCGATCTGGTGGCGGCCAGGGCAGATCGTCCTCCTGCATG
ATCTCCGAGTCGATGATGATTCGCTTCAGTTCTTCCATCACGGACTGGTG
GACGAAGGCCTCCTTGCGGATCATGGTGTCGTTCTTGTAGTTGGAGTTGT
TGGCGTACCGCAGCTTGCCATCCGGCCGGAACTCGAACTCCAAGAATTCG
TGCCCGAACTTGCCCTTGTGTCCGACGTAGTAGCGTAGGTAAAAGTCCTC
CGTGGACATGTCGACTGATAACT

BO11883.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9401-PA 444 mago-RA 1..441 459..19 2205 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
mago-RA 1103 CG9401-RA 117..558 460..19 2210 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21128693..21128955 460..198 1315 100 Minus
2R 25286936 2R 21129010..21129192 201..19 915 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:31:24 has no hits.

BO11883.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:36 Download gff for BO11883.3prime
Subject Subject Range Query Range Percent Splice Strand
mago-PA 1..444 15..459 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:35 Download gff for BO11883.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9401-PA 1..444 15..459 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 12:55:29 Download gff for BO11883.3prime
Subject Subject Range Query Range Percent Splice Strand
mago-RA 111..563 13..466 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:50 Download gff for BO11883.3prime
Subject Subject Range Query Range Percent Splice Strand
mago-RA 111..563 13..466 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:50 Download gff for BO11883.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21128687..21128954 199..466 98 -> Minus
2R 21129013..21129197 13..198 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 12:55:29 Download gff for BO11883.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17016192..17016459 199..466 98 -> Minus
arm_2R 17016518..17016702 13..198 98   Minus

BO11883.5prime Sequence

473 bp (472 high quality bases) assembled on 2006-04-19

> BO11883.5prime
GAAGTTATCAGTCGACATGTCCACGGAGGACTTTTACCTACGCTACTACG
TCGGACACAAGGGCAAGTTCGGGCACGAATTCTTGGAGTTCGAGTTCCGG
CCGGATGGCAAGCTGCGGTACGCCAACAACTCCAACTACAAGAACGACAC
CATGATCCGCAAGGAGGCCTTCGTCCACCAGTCCGTGATGGAAGAACTGA
AGCGAATCATCATCGACTCGGAGATCATGCAGGAGGACGATCTGCCCTGG
CCGCCACCAGATCGCGTGGGTCGACAGGAACTGGAGATCGTCATCGGAGA
CGAGCACATCTCGTTCACCACCTCGAAAACGGGATCATTGGTGGACGTGA
ACCGGTCAAAAGATCCCGAGGGCCTGCGATGCTTTTACTACCTGGTGCAG
GATCTCAAGTGCCTGGTCTTCTCACTCATCGGCCTGCATTTCAAGATCAA
GCCCATAGCAAGCTTTCTAGACC

BO11883.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG9401-PA 444 mago-RA 1..441 17..457 2205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
mago-RA 1103 CG9401-RA 117..558 16..457 2210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:25:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21128693..21128955 16..278 1315 100 Plus
2R 25286936 2R 21129010..21129192 275..457 915 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:25:26 has no hits.

BO11883.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:37 Download gff for BO11883.5prime
Subject Subject Range Query Range Percent Splice Strand
mago-PA 1..444 17..461 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:36 Download gff for BO11883.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9401-PA 1..444 17..461 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:39:26 Download gff for BO11883.5prime
Subject Subject Range Query Range Percent Splice Strand
mago-RA 111..563 10..463 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:10:25 Download gff for BO11883.5prime
Subject Subject Range Query Range Percent Splice Strand
mago-RA 111..563 10..463 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:10:25 Download gff for BO11883.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21129013..21129197 278..463 98   Plus
2R 21128687..21128954 10..277 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:39:26 Download gff for BO11883.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17016192..17016459 10..277 98 -> Plus
arm_2R 17016518..17016702 278..463 98   Plus

BO11883.complete Sequence

475 bp assembled on 2007-06-22

GenBank Submission: FJ638692

> BO11883.complete
GAAGTTATCAGTCGACATGTCCACGGAGGACTTTTACCTACGCTACTACG
TCGGACACAAGGGCAAGTTCGGGCACGAATTCTTGGAGTTCGAGTTCCGG
CCGGATGGCAAGCTGCGGTACGCCAACAACTCCAACTACAAGAACGACAC
CATGATCCGCAAGGAGGCCTTCGTCCACCAGTCCGTGATGGAAGAACTGA
AGCGAATCATCATCGACTCGGAGATCATGCAGGAGGACGATCTGCCCTGG
CCGCCACCAGATCGCGTGGGTCGACAGGAACTGGAGATCGTCATCGGAGA
CGAGCACATCTCGTTCACCACCTCGAAAACGGGATCATTGGTGGACGTGA
ACCGGTCAAAAGATCCCGAGGGCCTGCGATGCTTTTACTACCTGGTGCAG
GATCTCAAGTGCCTGGTCTTCTCACTCATCGGCCTGCATTTCAAGATCAA
GCCCATAGCAAGCTTTCTAGACCAT

BO11883.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
mago-RA 444 CG9401-PA 1..441 17..457 2205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
mago-RA 1103 CG9401-RA 117..558 16..457 2210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21128693..21128955 16..278 1315 100 Plus
2R 25286936 2R 21129010..21129192 275..457 915 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:54:46 has no hits.

BO11883.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:31 Download gff for BO11883.complete
Subject Subject Range Query Range Percent Splice Strand
mago-RA 1..444 17..461 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:25:16 Download gff for BO11883.complete
Subject Subject Range Query Range Percent Splice Strand
mago-RA 109..561 10..463 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:06 Download gff for BO11883.complete
Subject Subject Range Query Range Percent Splice Strand
mago-RA 118..558 17..459 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:32 Download gff for BO11883.complete
Subject Subject Range Query Range Percent Splice Strand
mago-RA 109..561 10..463 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:22 Download gff for BO11883.complete
Subject Subject Range Query Range Percent Splice Strand
mago-RA 118..558 17..459 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:22 Download gff for BO11883.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21128694..21128954 17..277 100 -> Plus
2R 21129013..21129192 278..459 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:06 Download gff for BO11883.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17016199..17016459 17..277 100 -> Plus
arm_2R 17016518..17016697 278..459 98   Plus

BO11883.pep Sequence

Translation from 16 to 475

> BO11883.pep
MSTEDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKE
AFVHQSVMEELKRIIIDSEIMQEDDLPWPPPDRVGRQELEIVIGDEHISF
TTSKTGSLVDVNRSKDPEGLRCFYYLVQDLKCLVFSLIGLHFKIKPIASF
LDH

BO11883.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:41:03
Subject Length Description Subject Range Query Range Score Percent Strand
mago-PA 147 CG9401-PA 1..147 1..147 783 100 Plus