Clone Sequence Records
BO11883.3prime Sequence
473 bp (472 high quality bases) assembled on 2006-04-19
> BO11883.3prime
ATGGTCTAGAAAGCTTGCTATGGGCTTGATCTTGAAATGCAGGCCGATGA
GTGAGAAGACCAGGCACTTGAGATCCTGCACCAGGTAGTAAAAGCATCGC
AGGCCCTCGGGATCTTTTGACCGGTTCACGTCCACCAATGATCCCGTTTT
CGAGGTGGTGAACGAGATGTGCTCGTCTCCGATGACGATCTCCAGTTCCT
GTCGACCCACGCGATCTGGTGGCGGCCAGGGCAGATCGTCCTCCTGCATG
ATCTCCGAGTCGATGATGATTCGCTTCAGTTCTTCCATCACGGACTGGTG
GACGAAGGCCTCCTTGCGGATCATGGTGTCGTTCTTGTAGTTGGAGTTGT
TGGCGTACCGCAGCTTGCCATCCGGCCGGAACTCGAACTCCAAGAATTCG
TGCCCGAACTTGCCCTTGTGTCCGACGTAGTAGCGTAGGTAAAAGTCCTC
CGTGGACATGTCGACTGATAACT
BO11883.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9401-PA | 444 | mago-RA | 1..441 | 459..19 | 2205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:31:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mago-RA | 1103 | CG9401-RA | 117..558 | 460..19 | 2210 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:31:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21128693..21128955 | 460..198 | 1315 | 100 | Minus |
2R | 25286936 | 2R | 21129010..21129192 | 201..19 | 915 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:31:24 has no hits.
BO11883.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:36 Download gff for
BO11883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mago-PA | 1..444 | 15..459 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:35 Download gff for
BO11883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9401-PA | 1..444 | 15..459 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 12:55:29 Download gff for
BO11883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mago-RA | 111..563 | 13..466 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:50 Download gff for
BO11883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mago-RA | 111..563 | 13..466 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:50 Download gff for
BO11883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21128687..21128954 | 199..466 | 98 | -> | Minus |
2R | 21129013..21129197 | 13..198 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 12:55:29 Download gff for
BO11883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17016192..17016459 | 199..466 | 98 | -> | Minus |
arm_2R | 17016518..17016702 | 13..198 | 98 | | Minus |
BO11883.5prime Sequence
473 bp (472 high quality bases) assembled on 2006-04-19
> BO11883.5prime
GAAGTTATCAGTCGACATGTCCACGGAGGACTTTTACCTACGCTACTACG
TCGGACACAAGGGCAAGTTCGGGCACGAATTCTTGGAGTTCGAGTTCCGG
CCGGATGGCAAGCTGCGGTACGCCAACAACTCCAACTACAAGAACGACAC
CATGATCCGCAAGGAGGCCTTCGTCCACCAGTCCGTGATGGAAGAACTGA
AGCGAATCATCATCGACTCGGAGATCATGCAGGAGGACGATCTGCCCTGG
CCGCCACCAGATCGCGTGGGTCGACAGGAACTGGAGATCGTCATCGGAGA
CGAGCACATCTCGTTCACCACCTCGAAAACGGGATCATTGGTGGACGTGA
ACCGGTCAAAAGATCCCGAGGGCCTGCGATGCTTTTACTACCTGGTGCAG
GATCTCAAGTGCCTGGTCTTCTCACTCATCGGCCTGCATTTCAAGATCAA
GCCCATAGCAAGCTTTCTAGACC
BO11883.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9401-PA | 444 | mago-RA | 1..441 | 17..457 | 2205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:25:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mago-RA | 1103 | CG9401-RA | 117..558 | 16..457 | 2210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:25:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21128693..21128955 | 16..278 | 1315 | 100 | Plus |
2R | 25286936 | 2R | 21129010..21129192 | 275..457 | 915 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:25:26 has no hits.
BO11883.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:37 Download gff for
BO11883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mago-PA | 1..444 | 17..461 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:36 Download gff for
BO11883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9401-PA | 1..444 | 17..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:39:26 Download gff for
BO11883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mago-RA | 111..563 | 10..463 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:10:25 Download gff for
BO11883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mago-RA | 111..563 | 10..463 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:10:25 Download gff for
BO11883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21129013..21129197 | 278..463 | 98 | | Plus |
2R | 21128687..21128954 | 10..277 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:39:26 Download gff for
BO11883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17016192..17016459 | 10..277 | 98 | -> | Plus |
arm_2R | 17016518..17016702 | 278..463 | 98 | | Plus |
BO11883.complete Sequence
475 bp assembled on 2007-06-22
GenBank Submission: FJ638692
> BO11883.complete
GAAGTTATCAGTCGACATGTCCACGGAGGACTTTTACCTACGCTACTACG
TCGGACACAAGGGCAAGTTCGGGCACGAATTCTTGGAGTTCGAGTTCCGG
CCGGATGGCAAGCTGCGGTACGCCAACAACTCCAACTACAAGAACGACAC
CATGATCCGCAAGGAGGCCTTCGTCCACCAGTCCGTGATGGAAGAACTGA
AGCGAATCATCATCGACTCGGAGATCATGCAGGAGGACGATCTGCCCTGG
CCGCCACCAGATCGCGTGGGTCGACAGGAACTGGAGATCGTCATCGGAGA
CGAGCACATCTCGTTCACCACCTCGAAAACGGGATCATTGGTGGACGTGA
ACCGGTCAAAAGATCCCGAGGGCCTGCGATGCTTTTACTACCTGGTGCAG
GATCTCAAGTGCCTGGTCTTCTCACTCATCGGCCTGCATTTCAAGATCAA
GCCCATAGCAAGCTTTCTAGACCAT
BO11883.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:54:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mago-RA | 444 | CG9401-PA | 1..441 | 17..457 | 2205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:54:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mago-RA | 1103 | CG9401-RA | 117..558 | 16..457 | 2210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:54:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21128693..21128955 | 16..278 | 1315 | 100 | Plus |
2R | 25286936 | 2R | 21129010..21129192 | 275..457 | 915 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:54:46 has no hits.
BO11883.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:31 Download gff for
BO11883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mago-RA | 1..444 | 17..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:25:16 Download gff for
BO11883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mago-RA | 109..561 | 10..463 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:06 Download gff for
BO11883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mago-RA | 118..558 | 17..459 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:32 Download gff for
BO11883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mago-RA | 109..561 | 10..463 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:22 Download gff for
BO11883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mago-RA | 118..558 | 17..459 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:22 Download gff for
BO11883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21128694..21128954 | 17..277 | 100 | -> | Plus |
2R | 21129013..21129192 | 278..459 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:06 Download gff for
BO11883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17016199..17016459 | 17..277 | 100 | -> | Plus |
arm_2R | 17016518..17016697 | 278..459 | 98 | | Plus |
BO11883.pep Sequence
Translation from 16 to 475
> BO11883.pep
MSTEDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKE
AFVHQSVMEELKRIIIDSEIMQEDDLPWPPPDRVGRQELEIVIGDEHISF
TTSKTGSLVDVNRSKDPEGLRCFYYLVQDLKCLVFSLIGLHFKIKPIASF
LDH
BO11883.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:41:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mago-PA | 147 | CG9401-PA | 1..147 | 1..147 | 783 | 100 | Plus |