Clone BO11886 Report

Search the DGRC for BO11886

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:118
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptCG6225-RA
Protein status:BO11886.pep: Imported from assembly
Sequenced Size:2147

Clone Sequence Records

BO11886.3prime Sequence

868 bp (772 high quality bases) assembled on 2006-04-19

> BO11886.3prime
ATGGTCTAGAAAGCTTGGCGGATCGCGAGGGTATAATCGCAGAAAGGATA
ACCATTAGTCCCAGTCCCAGTAGTATCAGGGGACTGGCGGAGTGACCACA
GCTTCCTGCTCCGGTCGCAGAGCGGTACTCATCCTCAGGCAGATACTCCC
GAATGTGACGCGTTTGGTTCATCATCCAGTAGAAGGCCCGCATGTTGCCC
AGTCGCTTCAGTTCGTCCCCAATATCGTTCCGGATCTTGGCATTGTACTC
ATTTAGGAGACGCTTCTCCGCGGCACTCAGGAGCGTACTGTCGATCAGTT
TGGGCTCATACGGCACCATGGTGACGTCCCGGAATGCAAGGAAGCGTGCT
CCACTGGGATGTGTATGGCCAGTGTCCACAACCTCGAGCACGTTCTTCAG
ACGAACGCCAAAGTCATCGCGTTTGTAGTAGCCGGATTCGCTAGAGAAGA
AGTAGCCCTGCTTGAAGTGAAAACTGCTATTTTTGCCATAGGAAACTGAT
ATAGGAGGTTCTTCCACAGATCCAAAGGATCCAATGCCATGACCTGTTGC
CTGCGGGAAGTCCGTCATGTCCTTCCAAACCATGCTGCGCACCAAGGCGT
CCACCTCGGAGGGCTTCAGATCGGACGGAAACTTGAGTTGTGCCAGATGC
AGAATTCCAGCCAGAACATTCGTGTAGGCCTTTTTCATCTCGTGCGTGGG
CTCACCAAAAATGAAGGTGCGCGACACGTCCGTGGTGCCCTCCAGATACT
GACCCCCAGACTCGATGACCAGCAGACTCTGGTCGGAGACCTCGATGTTG
GTCACATTGCTGGAAATGTAGTAGGGCAGGGCGGAGTGTTCTCCATAGGC
CACCCCCGTTCGCAGGGA

BO11886.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG6225-PA 2115 CG6225-RA 1264..2112 868..20 4195 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 20:11:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG6225-RB 2952 CG6225-RB 1737..2585 868..20 4215 99.8 Minus
CG6225-RA 2726 CG6225-RA 1511..2359 868..20 4215 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 20:10:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12660074..12660493 439..20 2100 100 Minus
3R 32079331 3R 12659522..12659882 868..508 1775 99.4 Minus
3R 32079331 3R 12659950..12660018 507..439 345 100 Minus
Blast to na_te.dros performed on 2015-01-31 20:10:58 has no hits.

BO11886.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:42 Download gff for BO11886.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6225-PA 1265..2115 15..867 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:43 Download gff for BO11886.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6225-PA 1265..2115 15..867 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 11:37:13 Download gff for BO11886.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6225-RA 1512..2363 14..867 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 22:49:59 Download gff for BO11886.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6225-RA 1512..2363 14..867 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 22:49:59 Download gff for BO11886.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12659950..12660018 439..507 100 -> Minus
3R 12659523..12659882 508..867 99 -> Minus
3R 12660075..12660497 14..438 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 11:37:13 Download gff for BO11886.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8485245..8485604 508..867 99 -> Minus
arm_3R 8485672..8485740 439..507 100 -> Minus
arm_3R 8485797..8486219 14..438 99   Minus

BO11886.5prime Sequence

811 bp (699 high quality bases) assembled on 2006-04-19

> BO11886.5prime
GAAGTTATCAGTCGACATGACGACAGCCAAATGGATTTGGCGCTTGGCGC
TGAGCATCTTGCTGGTCGTGGGCTTTGTGGCTGCGGAAAAGCCGACTGGC
TATCATCGCGAGATTTGCCAATACCGCAAGGGCAAACATATCCAGCCCAT
GAGTGTTTATCACAATCGCCTGATGGCGATGCGCGAACAAATGCAGATTA
GAGCCACGCTGCAGGGACCGGAGATCTATGGCTACATACTGCCCTCCACG
GATGAGCATCTCAACCAGGAGGTGGCAGCGCGAGATCAGAGATTGCGATA
TCTGTCCGGCTTCTCTGGAGTGCGTGCCTTTGCTGCCGTGACCAGTCACG
GAGCAGCCATTTGGGTGGAGAACAGATATGCCCAGCAGGCCGATGGAGAG
CTGGAGTGCGACTGGGAGATCTATCTGACCAGCGGGAATGTATCAGTGGC
CGACTGGTTGGGGAGCCATGTTCACATCGACAAGCGAGTGGGTGCCGATC
CCCATCTGGTGCCGCACTCCCTTTGGGTTCAGTGGGAGCGAGAGCTGGAG
GACAAGTTCCTTAAGCTGGTCAGGATCAATACCAATCTGGTGGATCACAT
TTGGGGCGATGAGCGACCGGAGATGCCCAAGAACCAGGTGATAAAAGTGC
ACGAGAAGCACTTCGCCGGCGAGAGTTGGCAGGACAAGGTCAAGGAGTTG
AGAAGGCGACTGGCGCATCTGGGCTGCGATGCCATGGTGGTCACTTCGCT
CACCGAGATTGCCTACTTGCTAAACATTCCGGGCACAGACATTCCGTATA
CTCCTGTTGAT

BO11886.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG6225-PA 2115 CG6225-RA 1..791 17..807 3930 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG6225-RB 2952 CG6225-RB 474..1264 17..807 3940 99.9 Plus
CG6225-RA 2726 CG6225-RA 248..1038 17..807 3940 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:51:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12658272..12658939 140..807 3325 99.9 Plus
3R 32079331 3R 12658136..12658210 65..139 375 100 Plus
3R 32079331 3R 12656854..12656902 17..65 245 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:51:57 has no hits.

BO11886.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:44 Download gff for BO11886.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6225-PA 1..794 17..811 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:44 Download gff for BO11886.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6225-PA 1..794 17..811 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:14:52 Download gff for BO11886.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6225-RA 248..1041 17..811 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:20:45 Download gff for BO11886.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6225-RA 248..1041 17..811 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:20:45 Download gff for BO11886.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12656854..12656902 17..65 100 -> Plus
3R 12658137..12658210 66..139 100 -> Plus
3R 12658272..12658942 140..811 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:14:52 Download gff for BO11886.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8482576..8482624 17..65 100 -> Plus
arm_3R 8483859..8483932 66..139 100 -> Plus
arm_3R 8483994..8484664 140..811 99   Plus

BO11886.complete Sequence

2147 bp assembled on 2008-08-14

> BO11886.complete
GAAGTTATCAGTCGACATGACGACAGCCAAATGGATTTGGCGCTTGGCGC
TGAGCATCTTGCTGGTCGTGGGCTTTGTGGCTGCGGAAAAGCCGACTGGC
TATCATCGCGAGATTTGCCAATACCGCAAGGGCAAACATATCCAGCCCAT
GAGTGTTTATCACAATCGCCTGATGGCGATGCGCGAACAAATGCAGATTA
GAGCCACGCTGCAGGGACCGGAGATCTATGGCTACATACTGCCCTCCACG
GATGAGCATCTCAACCAGGAGGTGGCAGCGCGAGATCAGAGATTGCGATA
TCTGTCCGGCTTCTCTGGAGTGCGTGCCTTTGCTGCCGTGACCAGTCACG
GAGCAGCCATTTGGGTGGAGAACAGATATGCCCAGCAGGCCGATGGAGAG
CTGGAGTGCGACTGGGAGATCTATCTGACCAGCGGGAATGTATCAGTGGC
CGACTGGTTGGGGAGCCATGTTCACATCGACAAGCGAGTGGGTGCCGATC
CCCATCTGGTGCCGCACTCCCTTTGGGTTCAGTGGGAGCGAGAGCTGGAG
GACAAGTTCCTTAAGCTGGTCAGGATCAATACCAATCTGGTGGATCACAT
TTGGGGCGATGAGCGACCGGAGATGCCCAAGAACCAGGTGATAAAAGTGC
ACGAGAAGCACTTCGCCGGCGAGAGTTGGCAGGACAAGGTCAAGGAGTTG
AGAAGGCGACTGGCGCATCTGGGCTGCGATGCCATGGTGGTCACTTCGCT
CACCGAGATTGCCTACTTGCTAAACATTCGGGGCACAGACATTCCGTATA
CTCCTGTGATTAAGTCATACGCCGTGATCAGTCGGGATGATATATTCTTC
TATGTGGACCACTCAAAGATTAGTCTGGGCATTGACCTTCATCTCCGCAC
AGACTGCTTCAATGAAGACTGCGTGAAAATCAAAGAGTACAATCAGATCT
GGAGTGACATTCGTACCTATGCTCAGATCTGGAAGCGCGTCCTTGTACCC
GCTCCTTGTGTACAGGATCTTGGAGCGTCGGAGGCGATATACACCTCCAT
GCCAGGCAAAATTGTCGTCTGGGAGATCTCACCCATTATCTTTATGCGGG
CACAGAAAAACTCCGATGAACAGGCCGGTATGAGAAGGGCACACATCCGG
GATGGCGCCGCCATTTGTGAGGCCATGAGCAACATGGAGACTAGGTTCCA
TACCGAGCAGTGGACCGAGGAGAAGATTAAGTACGAGGTAGAGCTCTGGC
GTTTGTCCCAGAAGCACGCCAAGGGCTTGTCCCTGCGAACGGTGGTGGCC
TATGGAGAACACTCCGCCCTGCCCTACTACATCTCCAGCAATGTGACCAA
CATCGAGGTCTCCGACCAGAGTCTGCTGGTCATCGAGTCTGGGGGTCAGT
ATCTGGAGGGCACCACGGACGTGTCGCGCACCTTCATTTTTGGTGAGCCC
ACGCACGAGATGAAAAAGGCCTACACGAATGTTCTGGCTGGAATTCTGCA
TCTGGCACAACTCAAGTTTCCGTCCGATCTGAAGCCCTCCGAGGTGGACG
CCTTGGTGCGCAGCATGGTTTGGAAGGACATGACGGACTTCCCGCAGGCA
ACAGGTCATGGCATTGGATCCTTTGGATCTGTGGAAGAACCTCCTATATC
AGTTTCCTATGGCAAAAATAGCAGTTTTCACTTCAAGCAGGGCTACTTCT
TCTCTAGCGAATCCGGCTACTACAAACGCGATGACTTTGGCGTTCGTCTG
AAGAACGTGCTCGAGGTTGTGGACACTGGCCATACACATCCCAGTGGAGC
ACGCTTCCTTGCATTCCGGGACGTCACCATGGTGCCGTATGAGCCCAAAC
TGATCGACAGTACGCTCCTGAGTGCCGCGGAGAAGCGTCTCCTAAATGAG
TACAATGCCAAGATCCGGAACGATATTGGGGACGAACTGAAGCGACTGGG
CAACATGCGGGCCTTCTACTGGATGATGAACCAAACGCGTCACATTCGGG
AGTATCTGCCTGAGGATGAGTACCGCTCTGCGACCGGAGCAGGAAGCTGT
GGTCACTCCGCCAGTCCCCTGATACTACTGGGACTGGGACTAATGGTTAT
CCTTTCTGCGATTATACCCTCGCGATCCGCCAAGCTTTCTAGACCAT

BO11886.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:38:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG6225-RB 2115 CG6225-PB 1..2112 17..2128 10560 100 Plus
CG6225-RA 2115 CG6225-PA 1..2112 17..2128 10560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG6225-RB 2952 CG6225-RB 474..2585 17..2128 10560 100 Plus
CG6225-RA 2726 CG6225-RA 248..2359 17..2128 10560 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:38:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12659170..12659882 928..1640 3565 100 Plus
3R 32079331 3R 12658272..12658946 140..814 3375 100 Plus
3R 32079331 3R 12660074..12660493 1709..2128 2100 100 Plus
3R 32079331 3R 12659002..12659116 813..927 575 100 Plus
3R 32079331 3R 12658136..12658210 65..139 375 100 Plus
3R 32079331 3R 12659950..12660018 1641..1709 345 100 Plus
3R 32079331 3R 12656854..12656902 17..65 245 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:38:27 has no hits.

BO11886.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:55 Download gff for BO11886.complete
Subject Subject Range Query Range Percent Splice Strand
CG6225-RB 474..2589 17..2134 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:01 Download gff for BO11886.complete
Subject Subject Range Query Range Percent Splice Strand
CG6225-RA 248..2359 17..2131 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:54 Download gff for BO11886.complete
Subject Subject Range Query Range Percent Splice Strand
CG6225-RB 474..2585 17..2131 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:43 Download gff for BO11886.complete
Subject Subject Range Query Range Percent Splice Strand
CG6225-RA 248..2359 17..2131 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:43 Download gff for BO11886.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12659950..12660018 1641..1709 100 -> Plus
3R 12656854..12656902 17..65 100 -> Plus
3R 12658137..12658210 66..139 100 -> Plus
3R 12658272..12658946 140..814 100 -> Plus
3R 12659004..12659116 815..927 100 -> Plus
3R 12659170..12659882 928..1640 100 -> Plus
3R 12660075..12660493 1710..2131 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:01 Download gff for BO11886.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8482576..8482624 17..65 100 -> Plus
arm_3R 8483859..8483932 66..139 100 -> Plus
arm_3R 8483994..8484668 140..814 100 -> Plus
arm_3R 8484726..8484838 815..927 100 -> Plus
arm_3R 8484892..8485604 928..1640 100 -> Plus
arm_3R 8485672..8485740 1641..1709 100 -> Plus
arm_3R 8485797..8486215 1710..2131 99   Plus

BO11886.pep Sequence

Translation from 16 to 2146

> BO11886.pep
MTTAKWIWRLALSILLVVGFVAAEKPTGYHREICQYRKGKHIQPMSVYHN
RLMAMREQMQIRATLQGPEIYGYILPSTDEHLNQEVAARDQRLRYLSGFS
GVRAFAAVTSHGAAIWVENRYAQQADGELECDWEIYLTSGNVSVADWLGS
HVHIDKRVGADPHLVPHSLWVQWERELEDKFLKLVRINTNLVDHIWGDER
PEMPKNQVIKVHEKHFAGESWQDKVKELRRRLAHLGCDAMVVTSLTEIAY
LLNIRGTDIPYTPVIKSYAVISRDDIFFYVDHSKISLGIDLHLRTDCFNE
DCVKIKEYNQIWSDIRTYAQIWKRVLVPAPCVQDLGASEAIYTSMPGKIV
VWEISPIIFMRAQKNSDEQAGMRRAHIRDGAAICEAMSNMETRFHTEQWT
EEKIKYEVELWRLSQKHAKGLSLRTVVAYGEHSALPYYISSNVTNIEVSD
QSLLVIESGGQYLEGTTDVSRTFIFGEPTHEMKKAYTNVLAGILHLAQLK
FPSDLKPSEVDALVRSMVWKDMTDFPQATGHGIGSFGSVEEPPISVSYGK
NSSFHFKQGYFFSSESGYYKRDDFGVRLKNVLEVVDTGHTHPSGARFLAF
RDVTMVPYEPKLIDSTLLSAAEKRLLNEYNAKIRNDIGDELKRLGNMRAF
YWMMNQTRHIREYLPEDEYRSATGAGSCGHSASPLILLGLGLMVILSAII
PSRSAKLSRP

BO11886.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:56:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG6225-PB 704 CG6225-PB 1..704 1..704 3708 100 Plus
CG6225-PA 704 CG6225-PA 1..704 1..704 3708 100 Plus
ApepP-PB 613 CG6291-PB 9..613 52..660 830 31.4 Plus
ApepP-PA 613 CG6291-PA 9..613 52..660 830 31.4 Plus