Clone Sequence Records
BO11887.3prime Sequence
796 bp (783 high quality bases) assembled on 2006-04-19
> BO11887.3prime
ATGGTCTAGAAAGCTTGCCTGATGTGATCTGCTGTTGTAGTTGGTGGATG
AGGTGGTCATCGACTGGAGCTCAGTGGTGCGCTTTTGGACATCCAGCTCC
ATCTTGGTGGGGCAAATCAGACCCACCCACAGCCGACGGTTCGTGGAGTC
CAAGAGGACAAAGTAAATGAACATCACAAATCCCTGCATAGTGGCCGTGA
TGCAGAAGAGGTATGAAAAAGCCACACCTGCCTGCATGAAGGCGAATATT
CCAAAGATCCAGGTAAGACCCAGCAAAAAGAAGAGCATTATGGAGAGTCG
GATCTGCTTAACCACCATTTTCTTTTCGTTTTTATGGATGCTCTGGCTCA
AAGAGTGCGAGATGCTGTAGAAAACATACACGAATATCACCAAGTTGCAC
ACAGTAATCAAGGTCACAGGGAGCACCACCCCAAAAATGAGACCATAGCC
CGATGGATAGCAGATGCCAGTGTCCGTGGAAAGTTGGGCAGCCGAGGGGA
CGTACGAATCGGGATCTATAAGGGCCACCAGCAGGGTGGGGACCAAGGGC
AGTAGCCAGGCCACAATGGCGGCCTTCAGGATATAGCGAGGTGGTCTCTC
GATTCCGATAACTGTGACGTAACGCTGGAACTGCAGGAAGGCGATGATTA
GCATCCAACTGAAGAGAACCAGAATGGAGTACTGCATGGCAGCGCCCAGA
GCCACACAGCGAACTGTGTTTCCATTCACAACAAGCGCTTCGGATACATC
ATCTGTATTGAAGAACACGAAGAGCATCATCTGGAGACACATAGCC
BO11887.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11318-PA | 2409 | CG11318-RA | 1629..2406 | 796..19 | 3840 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:51:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11318-RA | 2764 | CG11318-RA | 1741..2518 | 796..19 | 3860 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:51:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31106608..31107385 | 19..796 | 3860 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:51:16 has no hits.
BO11887.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:45 Download gff for
BO11887.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11318-PA | 1629..2409 | 18..796 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:46 Download gff for
BO11887.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11318-PA | 1629..2409 | 18..796 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:29:52 Download gff for
BO11887.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11318-RA | 1741..2518 | 19..796 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:10:58 Download gff for
BO11887.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11318-RA | 1741..2518 | 19..796 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:10:58 Download gff for
BO11887.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31106608..31107385 | 19..796 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:29:52 Download gff for
BO11887.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26932330..26933107 | 19..796 | 99 | | Plus |
BO11887.5prime Sequence
783 bp (782 high quality bases) assembled on 2006-04-19
> BO11887.5prime
GAAGTTATCAGTCGACATGAATTTCAACTGGTGTGCTGGGCTCTTTGTGG
TCTTGGCCTTGGTTTCGCCGATTTATTCCGCCTGCCCAAAGGAAAATCAA
ATGTGCTTGAGAAACGGAACGTTTCAGTACTGTGATGGAGAGGAACGTAA
TTCATCGGACGAACTTATGCAAACACATCTGGTTTACTGTACGTCCATGT
TCTGCGAGCCGGAGGAGTTTCAGCACGACTACATAACGCGTAACCACGAT
CAAACACCTCACCAGAACAAGTGGAAACGGGCTAGAATCGGCGAACGTGC
CACCCTGCACGATGTTTGCCTTCTGCGAAACGGAATGCCGGTCACCAGGG
AGTGCAGAGTGAAGGACAACCGAGCCAACTGGGAGTCCACCGAACACTGG
GATCCCGTGGTGTGTTTGAGGCGATTCAGGGAGCACACGATCAGCGGTGA
CTTGAATAGCCTGCATGACGACGTTCTCGAGGGCAGGAGGCGCACCAATG
ACACCCAGGGGCGTCGTGAGATGACTGGCATAATGAGGAACATGTTCCGA
CAGAGAGGTGGGAATCTTCTACCCGCCGATGTTCACATGACCGGACAAAT
GTTCGGCGCCCTGATGCAGCAGGACAAGGATGCCACGGTCAGTGTGGACT
TGGTCAGTGTCTGCAAGGAGATAATGTCCTGCGACAGTAAGGTTCTTAGA
TTATCAGCTCAGCTCAACGCTACCAATTCCCTGCTCAACCAGTTCGAAAG
CTACATGGATGCTCTTCCGGAGCAACTGGTTCC
BO11887.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11318-PA | 2409 | CG11318-RA | 1..767 | 17..783 | 3810 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:53:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11318-RA | 2764 | CG11318-RA | 108..879 | 12..783 | 3830 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:53:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31108313..31109084 | 783..12 | 3830 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:53:23 has no hits.
BO11887.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:46 Download gff for
BO11887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11318-PA | 1..767 | 17..783 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:48 Download gff for
BO11887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11318-PA | 1..767 | 17..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:47:30 Download gff for
BO11887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11318-RA | 105..879 | 8..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:27:06 Download gff for
BO11887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11318-RA | 105..879 | 8..783 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:27:06 Download gff for
BO11887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31108313..31109087 | 8..783 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:47:30 Download gff for
BO11887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26934035..26934809 | 8..783 | 99 | | Minus |
BO11887.complete Sequence
2440 bp assembled on 2008-01-17
GenBank Submission: FJ632234
> BO11887.complete
GAAGTTATCAGTCGACATGAATTTCAACTGGTGTGCTGGGCTCTTTGTGG
TCTTGGCCTTGGTTTCGCCGATTTATTCCGCCTGCCCAAAGGAAAATCAA
ATGTGCTTGAGAAACGGAACGTTTCAGTACTGTGATGGAGAGGAACGTAA
TTCATCGGACGAACTTATGCAAACACATCTGGTTTACTGTACGTCCATGT
TCTGCGAGCCGGAGGAGTTTCAGCACGACTACATAACGCGTAACCACGAT
CAAACACCTCACCAGAACAAGTGGAAACGGGCTAGAATCGGCGAACGTGC
CACCCTGCACGATGTTTGCCTTCTGCGAAACGGAATGCCGGTCACCAGGG
AGTGCAGAGTGAAGGACAACCGAGCCAACTGGGAGTCCACCGAACACTGG
GATCCCGTGGTGTGTTTGAGGCGATTCAGGGAGCACACGATCAGCGGTGA
CTTGAATAGCCTGCATGACGACGTTCTCGAGGGCAGGAGGCGCACCAATG
ACACCCAGGGGCGTCGTGAGATGACTGGCATAATGAGGAACATGTTCCGA
CAGAGAGGTGGGAATCTTCTACCCGCCGATGTTCACATGACCGGACAAAT
GTTCGGCGCCCTGATGCAGCAGGACAAGGATGCCACGGTCAGTGTGGACT
TGGTCAGTGTCTGCAAGGAGATAATGTCCTGCGACAGTAAGGTTCTTAGA
TTATCAGCTCAGCTCAACGCTACCAATTCCCTGCTCAGCCAGTTCGAAAG
CTACATGGATGCTCTTCCGGAGCAACTGGTTCCCAAGGACAGATGCGGCA
AGGTGGTGGCCAAGCCGACCAGTGATGAAGCAGAAACGGCCACTACTGGA
GTGGAAACGTACAACTTCTCAGATATCGGTGTCCAAGCTCTGATTACCGG
CAATATCAGCGTGTTCTTCGCCAACCCCGAATGCGATCGCATAACTGGAT
TAGCTATATTCTCTGCGCCAGGGGATCAACGAAAGACTTCCGCCAGTGGC
TTCTGGTACCGCTTCATTCGATTCTCCGAAGACTTGGCTAAGGTCAAGGA
GGAATCTAATCTGGAGACAGCTGCATTTTTGCCGGAGAATCTCTGGCGGC
AAGTGAAAAGCAGGGGAGCAACCTATCTCATCTTTAAAGTCTATGCCCAC
GATGCTCTGTTCGTGGAAACCTCATTGCAACGCACTCGTAAGCCGCGCAG
CAAAGTAATCTCCATTTCAATACCAGGACTGAGAAGCAATTATCTCTCTC
TGCCACTGCCCTTTCTTCTGCGTAATGAAAATCTTCGCAATCCGGATTCA
AAGGCCTTTAGCATTGGGAGTGGATGCGGATATTGGAACTATGAAACCTG
GTCAACTGAGGGAGTAAGCACTGAAAGCAGTTCGGACCTCTTGAAGGATG
CCATCATCGAGTGCCACACTAACCACCTCACACAGTTTGCATTCCTGGTG
GGTGGAAGCTATCGAGCCAACGACCTTGGCGAGGAGATTCTAATTACTCC
GATTAATGAGAAAGTGCTGGACATTATCTCGATAGTGGGCTGCAGTCTTT
CCCTTTTGGGTATACTGGGAATATTCCTCACTGCCGCACTCTTCAAAAGC
TGGCGCAGTCAGGCCTCCACGAAGGTCTTACTGCACCTTTGCCTGGCTAT
GTGTCTCCAGATGATGCTCTTCGTGTTTCTCAATACAGATGATGTATCCG
AAGCGCTTGTTGTGAATGGAAACACAGTTCGCTGTGTGGCTCTGGGCGCT
GCCATGCAGTACTCCATTCTGGTTCTCTTCAGTTGGATGCTAATCATCGC
CTTCCTGCAGTTCCAGCGTTACGTCACAGTTATCGGAATCGAGAGACCAC
CTCGCTATATCCTGAAGGCCGCCATTGTGGCCTGGCTACTGCCCTTGGTC
CCCACCCTGCTGGTGGCCCTTATAGATCCCGATTCGTACGTCCCCTCGGC
TGCCCAACTTTCCACGGACACTGGCATCTGCTATCCATCGGGCTATGGTC
TCATTTTTGGGGTGGTGCTCCCTGTGACCTTGATTACTGTGTGCAACTTG
GTGATATTCGTGTATGTTTTCTACAGCATCTCGCACTCTTTGAGCCAGAG
CATCCATAAAAACGAAAAGAAAATGGTGGTTAAGCAGATCCGACTCTCCA
TAATGCTCTTCTTTTTGCTGGGTCTTACCTGGATCTTTGGAATATTCGCC
TTCATGCAGGCAGGTGTGGCTTTTTCATACCTCTTCTGCATCACGGCCAC
TATGCAGGGATTTGTGATGTTCATTTACTTTGTCCTCTTGGACTCCACGA
ACCGTCGGCTGTGGGTGGGTCTGATTTGCCCCACCAAGATGGAGCTGGAT
GTCCAAAAGCGCACCACTGAGCTCCAGTCGATGACCACCTCATCCACCAA
CTACAACAGCAGATCACATCAGGCAAGCTTTCTAGACCAT
BO11887.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:47:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11318-RA | 2409 | CG11318-PA | 1..2406 | 17..2422 | 12030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:47:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11318-RA | 2764 | CG11318-RA | 108..2518 | 12..2422 | 12040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:47:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31107860..31109084 | 1236..12 | 6110 | 99.9 | Minus |
| 3R | 32079331 | 3R | 31106608..31107794 | 2422..1236 | 5935 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:47:10 has no hits.
BO11887.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:31 Download gff for
BO11887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11318-RA | 1..2409 | 17..2423 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:20 Download gff for
BO11887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11318-RA | 110..2515 | 17..2424 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:03 Download gff for
BO11887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11318-RA | 113..2518 | 17..2424 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:32 Download gff for
BO11887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11318-RA | 102..2515 | 8..2422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:12 Download gff for
BO11887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11318-RA | 113..2518 | 17..2424 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:12 Download gff for
BO11887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31106606..31107794 | 1236..2424 | 99 | <- | Minus |
| 3R | 31107861..31109079 | 17..1235 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:03 Download gff for
BO11887.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26932328..26933516 | 1236..2424 | 99 | <- | Minus |
| arm_3R | 26933583..26934801 | 17..1235 | 100 | | Minus |
BO11887.pep Sequence
Translation from 16 to 2440
> BO11887.pep
MNFNWCAGLFVVLALVSPIYSACPKENQMCLRNGTFQYCDGEERNSSDEL
MQTHLVYCTSMFCEPEEFQHDYITRNHDQTPHQNKWKRARIGERATLHDV
CLLRNGMPVTRECRVKDNRANWESTEHWDPVVCLRRFREHTISGDLNSLH
DDVLEGRRRTNDTQGRREMTGIMRNMFRQRGGNLLPADVHMTGQMFGALM
QQDKDATVSVDLVSVCKEIMSCDSKVLRLSAQLNATNSLLSQFESYMDAL
PEQLVPKDRCGKVVAKPTSDEAETATTGVETYNFSDIGVQALITGNISVF
FANPECDRITGLAIFSAPGDQRKTSASGFWYRFIRFSEDLAKVKEESNLE
TAAFLPENLWRQVKSRGATYLIFKVYAHDALFVETSLQRTRKPRSKVISI
SIPGLRSNYLSLPLPFLLRNENLRNPDSKAFSIGSGCGYWNYETWSTEGV
STESSSDLLKDAIIECHTNHLTQFAFLVGGSYRANDLGEEILITPINEKV
LDIISIVGCSLSLLGILGIFLTAALFKSWRSQASTKVLLHLCLAMCLQMM
LFVFLNTDDVSEALVVNGNTVRCVALGAAMQYSILVLFSWMLIIAFLQFQ
RYVTVIGIERPPRYILKAAIVAWLLPLVPTLLVALIDPDSYVPSAAQLST
DTGICYPSGYGLIFGVVLPVTLITVCNLVIFVYVFYSISHSLSQSIHKNE
KKMVVKQIRLSIMLFFLLGLTWIFGIFAFMQAGVAFSYLFCITATMQGFV
MFIYFVLLDSTNRRLWVGLICPTKMELDVQKRTTELQSMTTSSTNYNSRS
HQASFLDH
BO11887.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:27:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11318-PA | 802 | CG11318-PA | 1..802 | 1..802 | 4179 | 100 | Plus |
| CG15556-PC | 755 | CG15556-PC | 7..754 | 5..798 | 1346 | 37.4 | Plus |
| CG15556-PB | 755 | CG15556-PB | 7..754 | 5..798 | 1346 | 37.4 | Plus |
| CG15556-PA | 755 | CG15556-PA | 7..754 | 5..798 | 1346 | 37.4 | Plus |
| CG43968-PA | 1026 | CG43968-PA | 587..1017 | 86..517 | 301 | 24.9 | Plus |
