Clone Sequence Records
BO11891.3prime Sequence
886 bp (772 high quality bases) assembled on 2006-04-19
> BO11891.3prime
ATGGTCTAGAAAGCTTGCTTCGCCGTCCTCCTCATCGGACGTATCTGTTG
TATAGTCGCTCAGGTTCTCCTGCTGATCGGTGTGCTCCGGTTCCGATTCG
CTCAGATCCCACTGAGGATGATCCGTCGGTGGTGCGGGAGCCTTCTGTAC
ATCCAACTTCAGCTCCTGCTGCTGATCCATACCCAAATACGAGTCCGATC
TCAGGCAAACGGTGAACGTGTAGACGCCCGGCCAGCGCGGCGCGGTAAAC
TTCAGCTGGATCTCCTCCTTCTCGACCAGATTGGTCACATGATAGGGCGC
TGTGAGCAGGGTGCGCGACTTGCGATCGCATATGTAGGTCCACCAGTACT
CCTGCTTCTCCTCGGGGAAGTAGGGGCAGTGGACGGTGTGCGACAGCCGA
GACTTGCCCTCGAGACGCTCCCTCTTGTTAAGCTTAGCTTGCAGTCGCTC
CCACTCCTCGTCATCGTCGTCGTCCAGCGAGGAGTTGTTCTTGCCCTTCT
CCTCATCCTCGCTGCCACTGCCGGCAGCCGATTCCACATCGCTGCCATCC
GCATTTCCAGCCTCCGATTCGGCATCGGAGTTACCCGCCGCCGCTTGATC
CTCGGATGCCGTGATCGTAGCTGTTGTCGCAGCCTTGGCCGGCACCTTCT
TCTGGTTCTTTTGGTTCTGGGCTGGTTTCTTACCACCCTTTCCCTTGCCA
CCCTTACGTGGCTTGGCCCAGGCAGAAGCCTTCTTGACCGGCGCAGCGGC
AGCAGCCTCATCCTCATCACCGGCAGCCTCCTCATTGGTCTCATCCTTGA
TGCCCTGCTTCTCAGGCGCCTTTGTGTCACCGAATAGCGTCTTCTTGTCC
TTGCGCTCCACCGTAACCGTGACCGTAACTATGGCC
BO11891.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8583-PA | 2262 | CG8583-RA | 1392..2259 | 886..19 | 4290 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:29:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec63-RA | 2944 | CG8583-RA | 1739..2606 | 886..19 | 4310 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 11:29:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7363079..7363770 | 886..195 | 3430 | 99.7 | Minus |
| 3L | 28110227 | 3L | 7363852..7364028 | 195..19 | 885 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 11:29:49 has no hits.
BO11891.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:51 Download gff for
BO11891.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8583-PA | 1392..2262 | 15..886 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:54 Download gff for
BO11891.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8583-PA | 1392..2262 | 15..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:38:19 Download gff for
BO11891.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sec63-RA | 1739..2609 | 15..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:12:40 Download gff for
BO11891.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec63-RA | 1739..2609 | 15..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:12:40 Download gff for
BO11891.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7363079..7363770 | 195..886 | 99 | -> | Minus |
| 3L | 7363853..7364031 | 15..194 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:38:19 Download gff for
BO11891.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7356953..7357131 | 15..194 | 98 | | Minus |
| arm_3L | 7356179..7356870 | 195..886 | 99 | -> | Minus |
BO11891.5prime Sequence
922 bp (783 high quality bases) assembled on 2006-04-19
> BO11891.5prime
GAAGTTATCAGTCGACATGGCGGGTCAAAAGTTTCAGTATGATGAGAGCG
GCGGAACGTTCTACTACTTTGTGTTATCGTTCTTGGCGCTAATATTGATA
CCGACCACCATTTACTATTGGCCACGTAAAAAGAAACAAGATAACAGCAA
ACTTAAAGAGGAATGTCAGTGCGCCGACTGCCAGAAAAAGAAGACCATCT
TGGCCAATGCCGAGCCGTACAGAGCTCTCACGTCATGGACCATCAAGCTG
ACCATAGTGCTGGGGTGGGCCCTACTGCTCTTCCTCACGTACCGCGTCTC
GCAGTTCGACTACGAGATGGCCAGCTTCGATCCCTTCGAGATCCTGAATG
TGCCGCCGACGTCGTCGCAGGCCGAGATCAAGAAGGCCTACTACCGGCTG
TCCAAGGTGCTCCATCCCGACAAGGAGACGGGTGACGAGAAGTCCTTCAT
GATGCTGAGCAAAGCGTACCAGGCGCTGACCGACGATGTGGCAAAGGAGA
ACTACGAGAAGTATGGTAATCCGGATGGACCGGGTGCCATGTCCTTTGGC
ATCGCCCTGCCCTCGTGGATTGTGGAGAAGGAGAATAGCGTTTGGGTTTT
GGGTCTGTACGGCCTGGTCTTCATGGTGGCCATGCCCTCGGCAGTGGGTG
TTTGGTGGTACCGCTCCATCCGCTTCAGTGGCGACAAAGTGCTGCTCGAT
ACCACTCAGATGTACTTTTACTTCATCCACAAGACACCGCACATGCTGCT
CAAGCGGGCACTTATGGTTCTGGCAGCCAGTTTGGAGTTTGACAAGCGAC
ACAACTCGCAGGTCCAGGAGCGGCAGTCGGACAATGACGAGGTGCCGGCG
CTGATTAGACAGCTGCCCAATCTGAATGAGAAGTGCAAGGGACATCCGCT
GTGCCGCATGTACTCCATCAGG
BO11891.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8583-PA | 2262 | CG8583-RA | 1..904 | 17..920 | 4470 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:52:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec63-RA | 2944 | CG8583-RA | 348..1251 | 17..920 | 4490 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:52:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7361742..7362457 | 139..854 | 3565 | 99.9 | Plus |
| 3L | 28110227 | 3L | 7360908..7361035 | 17..144 | 625 | 99.2 | Plus |
| 3L | 28110227 | 3L | 7362521..7362591 | 850..920 | 325 | 97.2 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:52:07 has no hits.
BO11891.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:52 Download gff for
BO11891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8583-PA | 1..906 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:56 Download gff for
BO11891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8583-PA | 1..906 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:14:55 Download gff for
BO11891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sec63-RA | 341..1253 | 11..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:21:20 Download gff for
BO11891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec63-RA | 341..1253 | 11..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:21:20 Download gff for
BO11891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7360901..7361031 | 11..140 | 98 | -> | Plus |
| 3L | 7361744..7362453 | 141..850 | 100 | -> | Plus |
| 3L | 7362522..7362593 | 851..922 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:14:55 Download gff for
BO11891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7354001..7354131 | 11..140 | 98 | -> | Plus |
| arm_3L | 7354844..7355553 | 141..850 | 100 | -> | Plus |
| arm_3L | 7355622..7355693 | 851..922 | 95 | | Plus |
BO11891.complete Sequence
2293 bp assembled on 2008-01-17
GenBank Submission: FJ632235
> BO11891.complete
GAAGTTATCAGTCGACATGGCGGGTCAAAAGTTTCAGTATGATGAGAGCG
GCGGAACGTTCTACTACTTTGTGTTATCGTTCTTGGCGCTAATATTGATA
CCGACCACCATTTACTATTGGCCACGTAAAAAGAAACAAGATAACAGCAA
ACTTAAAGAGGAATGTCAGTGCGCCGACTGCCAGAAAAAGAAGACCATCT
TGGCCAATGCCGAGCCGTACAGAGCTCTCACGTCATGGACCATCAAGCTG
ACCATAGTGCTGGGGTGGGCCCTACTGCTCTTCCTCACGTACCGCGTCTC
GCAGTTCGACTACGAGATGGCCAGCTTCGATCCCTTCGAGATCCTGAATG
TGCCGCCGACGTCGTCGCAGGCCGAGATCAAGAAGGCCTACTACCGGCTG
TCCAAGGTGCTCCATCCCGACAAGGAGACGGGTGACGAGAAGTCCTTCAT
GATGCTGAGCAAAGCGTACCAGGCGCTGACCGACGATGTGGCAAAGGAGA
ACTACGAGAAGTATGGTAATCCGGATGGACCGGGTGCCATGTCCTTTGGC
ATCGCCCTGCCCTCGTGGATTGTGGAGAAGGAGAATAGCGTTTGGGTTTT
GGGTCTGTACGGCCTGGTCTTCATGGTGGCCATGCCCTCGGCAGTGGGTG
TTTGGTGGTACCGCTCCATCCGCTTCAGTGGCGACAAAGTGCTGCTCGAT
ACCACTCAGATGTACTTTTACTTCATCCACAAGACACCGCACATGCTGCT
CAAGCGGGCACTTATGGTTCTGGCAGCCAGTTTGGAGTTTGACAAGCGAC
ACAACTCGCAGGTCCAGGAGCGGCAGTCGGACAATGACGAGGTGCCGGCG
CTGATTAGACAGCTGCCCAATCTGAATGAGAAGTGCAAGGAGCATCCGCT
GTGCCGCATGTACTCCATCAAGGCTCGCGCCATCCTGCATGCCCATCTCA
GTCGCATGCCCCTCAATCCGGAAACTCTGGAGCGCGATCGCCAGTTTGTG
GTGAAGAAGTGCCCGTATTTGGTGCAAGAAATGGTCTCCTGCGTTCACCA
GCTGGTCATGATGGCCTATGCCCGACGTGTGCCCCGCCTGCCCAGCATCG
AAACGATTGAGAACTGCATGAAAATGTCGCCGATGATTATCCAAGGCCTG
TGGGAGTTCAAATCGCCACTGCTGCAGCTGCCCCATCTCACCGAGGACCA
TCTGTACTTTATGAACAAGAAGAGGCACGTCAAGAACCTGCAGCAATTCG
CCCAGCTCAAGCCGGAGGAGAGCCGTCAGCTTCTGAAGAACCTATCTGAC
TTTGAGTACGAGAACACGATGAAAGTGCTGGGCAAGATGCCGCTGATTGA
CTTCTCCATTCGCTGCGAGGTTATCGACGATGAGAACACCAATGTGGTGA
CCGCCGGGGCCATAGTTACGGTCACGGTTACGCTGGAGCGCAAGGACATG
AAGACGCTATTCGGTGACACAAAGGCGCCTGAGAAGCAGGGCATCAAGGA
TGAGACCAATGAGGAGGCTGCCGGTGATGAGGATGAGGCTGCTGCCGCTG
CGCCGGTCAAGAAGGCTTCTGCCTGGGCCAAGCCACGTAAGGGTGGCAAG
GGAAAGGGTGGTAAGAAACCAGCCCAGAACCAAAAGAACCAGAAGAAGGT
GCCGGCCAAGGCTGCGACAACAGCTACGATCACGGCATCCGAGGATCAAG
CGGCGGCGGGTAACTCCGATGCCGAATCGGAGGCTGGAAATGCGGATGGC
AGCGATGTGGAATCGGCTGCCGGCAGTGGCAGCGAGGATGAGGAGAAGGG
CAAGAACAACTCCTCGCTGGACGACGACGATGACGAGGAGTGGGAGCGAC
TGCAAGCTAAGCTTAACAAGAGGGAGCGTCTCGAGGGCAAGTCTCGGCTG
TCGCACACCGTCCACTGCCCCTACTTCCCCGAGGAGAAGCAGGAGTACTG
GTGGACCTACATATGCGATCGCAAGTCGCGCACCCTGCTCACAGCGCCCT
ATCATGTGACCAATCTGGTCGAGAAGGAGGAGATCCAGCTGAAGTTTACC
GCGCCGCGCTGGCCGGGCGTCTACACGTTCACCGTTTGCCTGAGATCGGA
CTCGTATTTGGGTATGGATCAGCAGCAGGAGCTGAAGTTGGATGTACAGA
AGGCTCCCGCACCACCGACGGATCATCCTCAGTGGGATCTGAGCGAATCG
GAACCGGAGCACACCGATCAGCAGGAGAACCTGAGCGACTATACAACAGA
TACGTCCGATGAGGAGGACGGCGAAGCAAGCTTTCTAGACCAT
BO11891.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:39:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec63-RA | 2262 | CG8583-PA | 1..2259 | 17..2275 | 11295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:39:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec63-RA | 2944 | CG8583-RA | 348..2606 | 17..2275 | 11295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:39:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7362521..7363770 | 850..2099 | 6250 | 100 | Plus |
| 3L | 28110227 | 3L | 7361742..7362457 | 139..854 | 3565 | 99.9 | Plus |
| 3L | 28110227 | 3L | 7363852..7364028 | 2099..2275 | 885 | 100 | Plus |
| 3L | 28110227 | 3L | 7360908..7361035 | 17..144 | 625 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:39:43 has no hits.
BO11891.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:33 Download gff for
BO11891.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sec63-RA | 1..2262 | 17..2279 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:25 Download gff for
BO11891.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sec63-RA | 346..2604 | 17..2277 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:52 Download gff for
BO11891.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sec63-RA | 348..2606 | 17..2277 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:33 Download gff for
BO11891.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sec63-RA | 339..2607 | 11..2279 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:19 Download gff for
BO11891.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec63-RA | 348..2606 | 17..2277 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:19 Download gff for
BO11891.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7360908..7361031 | 17..140 | 100 | -> | Plus |
| 3L | 7361744..7362453 | 141..850 | 100 | -> | Plus |
| 3L | 7362522..7363770 | 851..2099 | 100 | -> | Plus |
| 3L | 7363853..7364028 | 2100..2277 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:52 Download gff for
BO11891.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7354008..7354131 | 17..140 | 100 | -> | Plus |
| arm_3L | 7354844..7355553 | 141..850 | 100 | -> | Plus |
| arm_3L | 7355622..7356870 | 851..2099 | 100 | -> | Plus |
| arm_3L | 7356953..7357128 | 2100..2277 | 98 | | Plus |
BO11891.pep Sequence
Translation from 16 to 2293
> BO11891.pep
MAGQKFQYDESGGTFYYFVLSFLALILIPTTIYYWPRKKKQDNSKLKEEC
QCADCQKKKTILANAEPYRALTSWTIKLTIVLGWALLLFLTYRVSQFDYE
MASFDPFEILNVPPTSSQAEIKKAYYRLSKVLHPDKETGDEKSFMMLSKA
YQALTDDVAKENYEKYGNPDGPGAMSFGIALPSWIVEKENSVWVLGLYGL
VFMVAMPSAVGVWWYRSIRFSGDKVLLDTTQMYFYFIHKTPHMLLKRALM
VLAASLEFDKRHNSQVQERQSDNDEVPALIRQLPNLNEKCKEHPLCRMYS
IKARAILHAHLSRMPLNPETLERDRQFVVKKCPYLVQEMVSCVHQLVMMA
YARRVPRLPSIETIENCMKMSPMIIQGLWEFKSPLLQLPHLTEDHLYFMN
KKRHVKNLQQFAQLKPEESRQLLKNLSDFEYENTMKVLGKMPLIDFSIRC
EVIDDENTNVVTAGAIVTVTVTLERKDMKTLFGDTKAPEKQGIKDETNEE
AAGDEDEAAAAAPVKKASAWAKPRKGGKGKGGKKPAQNQKNQKKVPAKAA
TTATITASEDQAAAGNSDAESEAGNADGSDVESAAGSGSEDEEKGKNNSS
LDDDDDEEWERLQAKLNKRERLEGKSRLSHTVHCPYFPEEKQEYWWTYIC
DRKSRTLLTAPYHVTNLVEKEEIQLKFTAPRWPGVYTFTVCLRSDSYLGM
DQQQELKLDVQKAPAPPTDHPQWDLSESEPEHTDQQENLSDYTTDTSDEE
DGEASFLDH
BO11891.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:27:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec63-PA | 753 | CG8583-PA | 1..753 | 1..753 | 3972 | 100 | Plus |
| l(3)72Ab-PA | 2142 | CG5931-PA | 1845..2052 | 249..480 | 168 | 27 | Plus |
