Clone Sequence Records
BO11892.3prime Sequence
518 bp (517 high quality bases) assembled on 2006-04-19
> BO11892.3prime
ATGGTCTAGAAAGCTTGCTGTCTCCATTTTCTCGACTTTCTTGCGCTTCG
TTTTGGACGTCGATGGCGAATCGGTGGCATCTGTATCCTCGGGCACCACT
TCCACTCGGATCCTCTTGCCAGCGACCACGTCCTCCTTCGATGGCTGCGT
TTCCATCGCCCGCTTCTTGGGCTTCACGAAGCTGCCACGTCCCGCGGCGC
GTTCCGCCTCCTCGATGCTGTACGGCTCGATCTCTAGGGCCTTGAGACGC
CTCTTGTGCACCTTGGTGCGGAAATGTGCCTGCATGGCGGTGTCATCGAT
GAAGTACTTGGCACAGTGCACGCAGTAGAACTGCGCGAATCCCGGCTTGT
CGAGATCCACATTCTGATTGATCAGTTCACCGCTCCGGGTCTGCAGATCG
TCGTCGATCTGGTCGAGATCACGACGTCGATTCCGCACACGCCATCTCCT
CTGCAGATGGGTATCGCCATAGTGCATCTTCTTGCGTTTCGATACCATTC
CCATGTCGACTGATAACT
BO11892.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3224-PA | 489 | CG3224-RA | 1..486 | 504..19 | 2430 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:30:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3224-RA | 851 | CG3224-RA | 231..716 | 504..19 | 2430 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 11:30:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6660687..6661172 | 19..504 | 2430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 11:30:13 has no hits.
BO11892.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:53 Download gff for
BO11892.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3224-PA | 1..489 | 18..504 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:57 Download gff for
BO11892.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3224-PA | 1..489 | 18..504 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:38:23 Download gff for
BO11892.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3224-RA | 223..721 | 13..513 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:12:42 Download gff for
BO11892.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3224-RA | 223..721 | 13..513 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:12:42 Download gff for
BO11892.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6660682..6661180 | 13..513 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:38:23 Download gff for
BO11892.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6554715..6555213 | 13..513 | 98 | | Plus |
BO11892.5prime Sequence
518 bp (517 high quality bases) assembled on 2006-04-19
> BO11892.5prime
GAAGTTATCACTCTACATGGGAATGGTATCGAAACGCAAGAAGATGCACT
ATGGCGATACCCATCTGCAGAGGAGATGGCGTGTGCGGAATCGACGTCGT
GATCTCGACCAGATCGACGACGATCTGCAGACCCGGAGCGGTGAACTGAT
CAATCAGAATGTGGATCTCGACAAGCCGGGATTCGCGCAGTTCTACTGCG
TGCACTGTGCCAAGTACTTCATCGATGACACCGCCATGCAGGCACATTTC
CGCACCAAGGTGCACAAGAGGCGTCTCAAGGCCCTAGAGATCGAGCCGTA
CAGCATCGAGGAGGCGGAACGCGCCGCGGGACGTGGCAGCTTCGTGAAGC
CCAAGAAGCGGGCGATGGAAACGCAGCCATCGAAGGAGGACGTGGTCGCT
GGCAAGAGGATCCGAGTGGAAGTGGTGCCCGAGGATACAGATGCCACCGA
TTCGCCATCGACGTCCAAAACGAAGCGCAAGAAAGTCGAGAAAATGGAGA
CAGCAAGCTTTCTAGACC
BO11892.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3224-PA | 489 | CG3224-RA | 1..486 | 17..502 | 2430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 05:30:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3224-RA | 851 | CG3224-RA | 231..716 | 17..502 | 2430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 05:30:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6660687..6661172 | 502..17 | 2430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 05:30:32 has no hits.
BO11892.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:54 Download gff for
BO11892.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3224-PA | 1..489 | 17..503 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:58 Download gff for
BO11892.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3224-PA | 1..489 | 17..503 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:14:15 Download gff for
BO11892.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3224-RA | 223..721 | 8..508 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:46:12 Download gff for
BO11892.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3224-RA | 223..721 | 8..508 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:46:12 Download gff for
BO11892.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6660682..6661180 | 8..508 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:14:15 Download gff for
BO11892.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6554715..6555213 | 8..508 | 98 | | Minus |
BO11892.complete Sequence
520 bp assembled on 2006-10-11
GenBank Submission: FJ632236
> BO11892.complete
GAAGTTATCAGTCGACATGGGAATGGTATCGAAACGCAAGAAGATGCACT
ATGGCGATACCCATCTGCAGAGGAGATGGCGTGTGCGGAATCGACGTCGT
GATCTCGACCAGATCGACGACGATCTGCAGACCCGGAGCGGTGAACTGAT
CAATCAGAATGTGGATCTCGACAAGCCGGGATTCGCGCAGTTCTACTGCG
TGCACTGTGCCAAGTACTTCATCGATGACACCGCCATGCAGGCACATTTC
CGCACCAAGGTGCACAAGAGGCGTCTCAAGGCCCTAGAGATCGAGCCGTA
CAGCATCGAGGAGGCGGAACGCGCCGCGGGACGTGGCAGCTTCGTGAAGC
CCAAGAAGCGGGCGATGGAAACGCAGCCATCGAAGGAGGACGTGGTCGCT
GGCAAGAGGATCCGAGTGGAAGTGGTGCCCGAGGATACAGATGCCACCGA
TTCGCCATCGACGTCCAAAACGAAGCGCAAGAAAGTCGAGAAAATGGAGA
CAGCAAGCTTTCTAGACCAT
BO11892.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:58:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3224-RA | 489 | CG3224-PA | 1..486 | 17..502 | 2430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:58:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3224-RA | 851 | CG3224-RA | 231..716 | 17..502 | 2430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:58:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6660687..6661172 | 502..17 | 2430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:58:08 has no hits.
BO11892.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:46 Download gff for
BO11892.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3224-RA | 1..489 | 17..503 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:14:45 Download gff for
BO11892.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3224-RA | 208..706 | 8..508 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:07:01 Download gff for
BO11892.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3224-RA | 231..716 | 17..504 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:46 Download gff for
BO11892.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3224-RA | 208..706 | 8..508 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:53:05 Download gff for
BO11892.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3224-RA | 231..716 | 17..504 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:53:05 Download gff for
BO11892.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6660685..6661172 | 17..504 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:07:01 Download gff for
BO11892.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6554718..6555205 | 17..504 | 99 | | Minus |
BO11892.pep Sequence
Translation from 16 to 520
> BO11892.pep
MGMVSKRKKMHYGDTHLQRRWRVRNRRRDLDQIDDDLQTRSGELINQNVD
LDKPGFAQFYCVHCAKYFIDDTAMQAHFRTKVHKRRLKALEIEPYSIEEA
ERAAGRGSFVKPKKRAMETQPSKEDVVAGKRIRVEVVPEDTDATDSPSTS
KTKRKKVEKMETASFLDH
BO11892.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:38:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3224-PA | 162 | CG3224-PA | 1..162 | 1..162 | 844 | 100 | Plus |
