Clone Sequence Records
BO11893.3prime Sequence
404 bp (403 high quality bases) assembled on 2006-04-19
> BO11893.3prime
ATGGTCTAGAAAGCTTGCCAGGGTTTTTGCGCGATCCAGCAGATCGCCAA
TGAACTTCGATATGTCTGATTGCGGGCGTTTGCAGACGGACAGTAATCTT
ATAAGATGAGATCTTCTTATGTCATCTGTGTCCATGTCCAGTATCTCGTC
GATGTCCACATCGATGGCCTCGTTTGGTGGATCGAAGAGCTTCTGTAGCT
CGTCGTAGAGCCACATCTCCACGGCCAGCCGCTTGCGGATGAGGCTCATC
TGGTGTGAACCGTACTTGGCCGTGAGGAACTTCTCCCGCCGCTCCTTCAC
CTCCGCCCCCTTCTCGTTGAAGTTGACCCGGAGGTTCGTCCGGTTCGGCG
ACCGCTCACAGTCGTTCATCTGCTCCAGACCGCACTGCATGTCGACTGAT
AACT
BO11893.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17124-PA | 375 | CG17124-RA | 1..372 | 390..19 | 1860 | 100 | Minus |
| CG17124-PB | 375 | CG17124-RB | 1..372 | 390..19 | 1860 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:36:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17124-RC | 2989 | CG17124-RC | 1202..1573 | 390..19 | 1860 | 100 | Minus |
| CG17124-RB | 2291 | CG17124-RB | 504..875 | 390..19 | 1860 | 100 | Minus |
| CG17124-RA | 1251 | CG17124-RA | 504..875 | 390..19 | 1860 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:36:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10745782..10745997 | 175..390 | 1080 | 100 | Plus |
| 2L | 23513712 | 2L | 10745491..10745571 | 19..99 | 405 | 100 | Plus |
| 2L | 23513712 | 2L | 10745635..10745722 | 100..187 | 395 | 96.6 | Plus |
Blast to na_te.dros performed on 2015-02-03 17:36:49 has no hits.
BO11893.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:54 Download gff for
BO11893.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17124-PB | 1..375 | 15..390 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:48:59 Download gff for
BO11893.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17124-PB | 1..375 | 15..390 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:36:27 Download gff for
BO11893.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17124-RA | 504..878 | 15..390 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:03:08 Download gff for
BO11893.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17124-RA | 504..878 | 15..390 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:03:08 Download gff for
BO11893.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10745487..10745571 | 15..99 | 97 | <- | Plus |
| 2L | 10745635..10745709 | 100..174 | 100 | <- | Plus |
| 2L | 10745782..10745997 | 175..390 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:36:27 Download gff for
BO11893.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10745487..10745571 | 15..99 | 97 | <- | Plus |
| arm_2L | 10745635..10745709 | 100..174 | 100 | <- | Plus |
| arm_2L | 10745782..10745997 | 175..390 | 100 | | Plus |
BO11893.5prime Sequence
404 bp (403 high quality bases) assembled on 2006-04-19
> BO11893.5prime
GAAGTTATCAGTCGACATGCAGTGCGGTCTGGAGCAGATGAACGACTGTG
AGCGGTCGCCGAACCGGACGAACCTCCGGGTCAACTTCAACGAGAAGGGG
GCGGAGGTGAAGGAGCGGCGGGAGAAGTTCCTCACGGCCAAGTACGGTTC
ACACCAGATGAGCCTCATCCGCAAGCGGCTGGCCGTGGAGATGTGGCTCT
ACGACGAGCTACAGAAGCTCTTCGATCCACCAAACGAGGCCATCGATGTG
GACATCGACGAGATACTGGACATGGACACAGATGACATAAGAAGATCTCA
TCTTATAAGATTACTGTCCGTCTGCAAACGCCCGCAATCAGACATATCGA
AGTTCATTGGCGATCTGCTGGATCGCGCAAAAACCCTGGCAAGCTTTCTA
GACC
BO11893.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17124-PA | 375 | CG17124-RA | 1..372 | 17..388 | 1860 | 100 | Plus |
| CG17124-PB | 375 | CG17124-RB | 1..372 | 17..388 | 1860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:48:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17124-RC | 2989 | CG17124-RC | 1202..1573 | 17..388 | 1860 | 100 | Plus |
| CG17124-RB | 2291 | CG17124-RB | 504..875 | 17..388 | 1860 | 100 | Plus |
| CG17124-RA | 1251 | CG17124-RA | 504..875 | 17..388 | 1860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:48:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10745782..10745997 | 232..17 | 1080 | 100 | Minus |
| 2L | 23513712 | 2L | 10745491..10745571 | 388..308 | 405 | 100 | Minus |
| 2L | 23513712 | 2L | 10745635..10745722 | 307..220 | 395 | 96.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:48:23 has no hits.
BO11893.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:19:55 Download gff for
BO11893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17124-PB | 1..375 | 17..392 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:49:01 Download gff for
BO11893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17124-PB | 1..375 | 17..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:46:57 Download gff for
BO11893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17124-RA | 504..878 | 17..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:21:29 Download gff for
BO11893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17124-RA | 504..878 | 17..392 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:21:29 Download gff for
BO11893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10745487..10745571 | 308..392 | 97 | <- | Minus |
| 2L | 10745635..10745709 | 233..307 | 100 | <- | Minus |
| 2L | 10745782..10745997 | 17..232 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:46:57 Download gff for
BO11893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10745487..10745571 | 308..392 | 97 | <- | Minus |
| arm_2L | 10745635..10745709 | 233..307 | 100 | <- | Minus |
| arm_2L | 10745782..10745997 | 17..232 | 100 | | Minus |
BO11893.complete Sequence
406 bp assembled on 2006-10-11
GenBank Submission: FJ632237
> BO11893.complete
GAAGTTATCAGTCGACATGCAGTGCGGTCTGGAGCAGATGAACGACTGTG
AGCGGTCGCCGAACCGGACGAACCTCCGGGTCAACTTCAACGAGAAGGGG
GCGGAGGTGAAGGAGCGGCGGGAGAAGTTCCTCACGGCCAAGTACGGTTC
ACACCAGATGAGCCTCATCCGCAAGCGGCTGGCCGTGGAGATGTGGCTCT
ACGACGAGCTACAGAAGCTCTTCGATCCACCAAACGAGGCCATCGATGTG
GACATCGACGAGATACTGGACATGGACACAGATGACATAAGAAGATCTCA
TCTTATAAGATTACTGTCCGTCTGCAAACGCCCGCAATCAGACATATCGA
AGTTCATTGGCGATCTGCTGGATCGCGCAAAAACCCTGGCAAGCTTTCTA
GACCAT
BO11893.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:49:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17124-RC | 375 | CG17124-PC | 1..372 | 17..388 | 1860 | 100 | Plus |
| CG17124-RB | 375 | CG17124-PB | 1..372 | 17..388 | 1860 | 100 | Plus |
| CG17124-RA | 375 | CG17124-PA | 1..372 | 17..388 | 1860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:49:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17124-RC | 2989 | CG17124-RC | 1202..1573 | 17..388 | 1860 | 100 | Plus |
| CG17124-RB | 2291 | CG17124-RB | 504..875 | 17..388 | 1860 | 100 | Plus |
| CG17124-RA | 1251 | CG17124-RA | 504..875 | 17..388 | 1860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:49:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10745782..10745997 | 232..17 | 1080 | 100 | Minus |
| 2L | 23513712 | 2L | 10745491..10745571 | 388..308 | 405 | 100 | Minus |
| 2L | 23513712 | 2L | 10745635..10745722 | 307..220 | 395 | 96.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:49:14 has no hits.
BO11893.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:47 Download gff for
BO11893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17124-RB | 1..375 | 17..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:01:19 Download gff for
BO11893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17124-RB | 495..869 | 17..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:08 Download gff for
BO11893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17124-RA | 504..875 | 17..390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:47 Download gff for
BO11893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17124-RB | 495..869 | 17..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:37 Download gff for
BO11893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17124-RA | 504..875 | 17..390 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:37 Download gff for
BO11893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10745489..10745571 | 308..390 | 97 | <- | Minus |
| 2L | 10745635..10745709 | 233..307 | 100 | <- | Minus |
| 2L | 10745782..10745997 | 17..232 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:08 Download gff for
BO11893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10745489..10745571 | 308..390 | 97 | <- | Minus |
| arm_2L | 10745635..10745709 | 233..307 | 100 | <- | Minus |
| arm_2L | 10745782..10745997 | 17..232 | 100 | | Minus |
BO11893.pep Sequence
Translation from 16 to 406
> BO11893.pep
MQCGLEQMNDCERSPNRTNLRVNFNEKGAEVKERREKFLTAKYGSHQMSL
IRKRLAVEMWLYDELQKLFDPPNEAIDVDIDEILDMDTDDIRRSHLIRLL
SVCKRPQSDISKFIGDLLDRAKTLASFLDH
BO11893.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:38:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17124-PC | 124 | CG17124-PC | 1..124 | 1..124 | 643 | 100 | Plus |
| CG17124-PB | 124 | CG17124-PB | 1..124 | 1..124 | 643 | 100 | Plus |
| CG17124-PA | 124 | CG17124-PA | 1..124 | 1..124 | 643 | 100 | Plus |
