Clone Sequence Records
BO11901.3prime Sequence
476 bp (475 high quality bases) assembled on 2006-04-19
> BO11901.3prime
ATGGTCTAGAAAGCTTGCCTTCAGAGGAATGAAACGGGAGCTGTGGGTGG
CACCGATACCAGGACGACCGTGCTTGACGGGCTTGTAGGTCAGGGCGAAC
TCGCCCAGGTAGTGACCGATCATCTCGGGCTTGACCTCCACCTGTCCGAA
GTCCTTGCCGTTGTAGACGCCAATGATGGAGCCGGTCATCTCGGGTACGA
TGATCATGTTCCTCAGGTGGGTCTTGACAATCTCGGGCTTCTCATTTGGC
GGTGCCTCCTTCTTGGCCTTGCGCAGCTTCTTGATCAGAGCCATTGGCTT
GCGCTTCAGTCCGCGGGAGAAACGCCTGCGGGCACGGCTGTGCATCAGCT
CCACCAGCTGGTTGTTGGGCATGTCCAGAAGCTGGTCCAAGTCGACACCG
CGGTAGGTGAACTTCTTGAAGGTACGCTTCTTCTTCAGATTTTCATCGAC
TTGATCGGCCATGTCGACTGATAACT
BO11901.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8332-PA | 447 | RpS15-RA | 1..444 | 462..19 | 2220 | 100 | Minus |
CG8332-PB | 444 | RpS15-RB | 7..441 | 453..19 | 2175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:22:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS15-RA | 627 | CG8332-RA | 34..477 | 462..19 | 2220 | 100 | Minus |
RpS15-RB | 726 | CG8332-RB | 226..660 | 453..19 | 2175 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:22:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16570624..16570848 | 140..364 | 1125 | 100 | Plus |
2R | 25286936 | 2R | 16570262..16570388 | 19..145 | 635 | 100 | Plus |
2R | 25286936 | 2R | 16570917..16571005 | 365..453 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:22:19 has no hits.
BO11901.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:20:03 Download gff for
BO11901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS15-PA | 1..447 | 16..462 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:49:10 Download gff for
BO11901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8332-PA | 1..447 | 16..462 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:38:26 Download gff for
BO11901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS15-RA | 34..482 | 13..462 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:17:02 Download gff for
BO11901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS15-RA | 34..482 | 13..462 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:17:02 Download gff for
BO11901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16570257..16570384 | 13..141 | 97 | <- | Plus |
2R | 16570626..16570848 | 142..364 | 100 | <- | Plus |
2R | 16570917..16571005 | 365..453 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:38:26 Download gff for
BO11901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12457762..12457889 | 13..141 | 97 | <- | Plus |
arm_2R | 12458131..12458353 | 142..364 | 100 | <- | Plus |
arm_2R | 12458422..12458510 | 365..453 | 100 | <- | Plus |
BO11901.5prime Sequence
476 bp (475 high quality bases) assembled on 2006-04-19
> BO11901.5prime
GAAGTTATCAGTCGACATGGCCGATCAAGTCGATGAAAATCTGAAGAAGA
AGCGTACCTTCAAGAAGTTCACCTACCGCGGTGTCGACTTGGACCAGCTT
CTGGACATGCCCAACAACCAGCTGGTGGAGCTGATGCACAGCCGTGCCCG
CAGGCGTTTCTCCCGCGGACTGAAGCGCAAGCCAATGGCTCTGATCAAGA
AGCTGCGCAAGGCCAAGAAGGAGGCACCGCCAAATGAGAAGCCCGAGATT
GTCAAGACCCACCTGAGGAACATGATCATCGTACCCGAGATGACCGGCTC
CATCATTGGCGTCTACAACGGCAAGGACTTCGGACAGGTGGAGGTCAAGC
CCGAGATGATCGGTCACTACCTGGGCGAGTTCGCCCTGACCTACAAGCCC
GTCAAGCACGGTCGTCCTGGTATCGGTGCCACCCACAGCTCCCGTTTCAT
TCCTCTGAAGGCAAGCTTTCTAGACC
BO11901.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8332-PA | 447 | RpS15-RA | 1..444 | 17..460 | 2220 | 100 | Plus |
CG8332-PB | 444 | RpS15-RB | 7..441 | 26..460 | 2175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:41:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS15-RA | 627 | CG8332-RA | 34..477 | 17..460 | 2220 | 100 | Plus |
RpS15-RB | 726 | CG8332-RB | 226..660 | 26..460 | 2175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:41:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16570624..16570848 | 339..115 | 1125 | 100 | Minus |
2R | 25286936 | 2R | 16570262..16570388 | 460..334 | 635 | 100 | Minus |
2R | 25286936 | 2R | 16570917..16571005 | 114..26 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:41:51 has no hits.
BO11901.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:20:04 Download gff for
BO11901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS15-PA | 1..447 | 17..463 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:49:11 Download gff for
BO11901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8332-PA | 1..447 | 17..463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 18:35:32 Download gff for
BO11901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS15-RA | 34..482 | 17..466 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:40:43 Download gff for
BO11901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS15-RA | 34..482 | 17..466 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:40:43 Download gff for
BO11901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16570626..16570848 | 115..337 | 100 | <- | Minus |
2R | 16570917..16571005 | 26..114 | 100 | <- | Minus |
2R | 16570257..16570384 | 338..466 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 18:35:32 Download gff for
BO11901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12457762..12457889 | 338..466 | 97 | <- | Minus |
arm_2R | 12458131..12458353 | 115..337 | 100 | <- | Minus |
arm_2R | 12458422..12458510 | 26..114 | 100 | <- | Minus |
BO11901.complete Sequence
478 bp assembled on 2006-10-11
GenBank Submission: FJ632238
> BO11901.complete
GAAGTTATCAGTCGACATGGCCGATCAAGTCGATGAAAATCTGAAGAAGA
AGCGTACCTTCAAGAAGTTCACCTACCGCGGTGTCGACTTGGACCAGCTT
CTGGACATGCCCAACAACCAGCTGGTGGAGCTGATGCACAGCCGTGCCCG
CAGGCGTTTCTCCCGCGGACTGAAGCGCAAGCCAATGGCTCTGATCAAGA
AGCTGCGCAAGGCCAAGAAGGAGGCACCGCCAAATGAGAAGCCCGAGATT
GTCAAGACCCACCTGAGGAACATGATCATCGTACCCGAGATGACCGGCTC
CATCATTGGCGTCTACAACGGCAAGGACTTCGGACAGGTGGAGGTCAAGC
CCGAGATGATCGGTCACTACCTGGGCGAGTTCGCCCTGACCTACAAGCCC
GTCAAGCACGGTCGTCCTGGTATCGGTGCCACCCACAGCTCCCGTTTCAT
TCCTCTGAAGGCAAGCTTTCTAGACCAT
BO11901.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:23:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS15-RA | 447 | CG8332-PA | 1..444 | 17..460 | 2220 | 100 | Plus |
RpS15-RB | 444 | CG8332-PB | 7..441 | 26..460 | 2175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:23:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS15-RA | 627 | CG8332-RA | 34..477 | 17..460 | 2220 | 100 | Plus |
RpS15-RB | 726 | CG8332-RB | 226..660 | 26..460 | 2175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:23:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16570624..16570848 | 339..115 | 1125 | 100 | Minus |
2R | 25286936 | 2R | 16570262..16570388 | 460..334 | 635 | 100 | Minus |
2R | 25286936 | 2R | 16570917..16571005 | 114..26 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:23:04 has no hits.
BO11901.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:54 Download gff for
BO11901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS15-RA | 1..447 | 17..463 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:14:56 Download gff for
BO11901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS15-RA | 41..489 | 17..466 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:16 Download gff for
BO11901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS15-RA | 34..477 | 17..462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:55 Download gff for
BO11901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS15-RA | 41..489 | 17..466 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:27 Download gff for
BO11901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS15-RA | 34..477 | 17..462 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:27 Download gff for
BO11901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16570259..16570384 | 338..462 | 98 | <- | Minus |
2R | 16570626..16570848 | 115..337 | 100 | <- | Minus |
2R | 16570917..16571011 | 17..114 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:16 Download gff for
BO11901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12458422..12458516 | 17..114 | 95 | | Minus |
arm_2R | 12457764..12457889 | 338..462 | 98 | <- | Minus |
arm_2R | 12458131..12458353 | 115..337 | 100 | <- | Minus |
BO11901.pep Sequence
Translation from 16 to 478
> BO11901.pep
MADQVDENLKKKRTFKKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSR
GLKRKPMALIKKLRKAKKEAPPNEKPEIVKTHLRNMIIVPEMTGSIIGVY
NGKDFGQVEVKPEMIGHYLGEFALTYKPVKHGRPGIGATHSSRFIPLKAS
FLDH
BO11901.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:37:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS15-PA | 148 | CG8332-PA | 1..148 | 1..148 | 769 | 100 | Plus |
RpS15-PB | 147 | CG8332-PB | 3..147 | 4..148 | 754 | 100 | Plus |