Clone BO11901 Report

Search the DGRC for BO11901

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:119
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptRpS15-RA
Protein status:BO11901.pep: validated full length
Sequenced Size:478

Clone Sequence Records

BO11901.3prime Sequence

476 bp (475 high quality bases) assembled on 2006-04-19

> BO11901.3prime
ATGGTCTAGAAAGCTTGCCTTCAGAGGAATGAAACGGGAGCTGTGGGTGG
CACCGATACCAGGACGACCGTGCTTGACGGGCTTGTAGGTCAGGGCGAAC
TCGCCCAGGTAGTGACCGATCATCTCGGGCTTGACCTCCACCTGTCCGAA
GTCCTTGCCGTTGTAGACGCCAATGATGGAGCCGGTCATCTCGGGTACGA
TGATCATGTTCCTCAGGTGGGTCTTGACAATCTCGGGCTTCTCATTTGGC
GGTGCCTCCTTCTTGGCCTTGCGCAGCTTCTTGATCAGAGCCATTGGCTT
GCGCTTCAGTCCGCGGGAGAAACGCCTGCGGGCACGGCTGTGCATCAGCT
CCACCAGCTGGTTGTTGGGCATGTCCAGAAGCTGGTCCAAGTCGACACCG
CGGTAGGTGAACTTCTTGAAGGTACGCTTCTTCTTCAGATTTTCATCGAC
TTGATCGGCCATGTCGACTGATAACT

BO11901.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8332-PA 447 RpS15-RA 1..444 462..19 2220 100 Minus
CG8332-PB 444 RpS15-RB 7..441 453..19 2175 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:22:20
Subject Length Description Subject Range Query Range Score Percent Strand
RpS15-RA 627 CG8332-RA 34..477 462..19 2220 100 Minus
RpS15-RB 726 CG8332-RB 226..660 453..19 2175 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:22:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16570624..16570848 140..364 1125 100 Plus
2R 25286936 2R 16570262..16570388 19..145 635 100 Plus
2R 25286936 2R 16570917..16571005 365..453 445 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:22:19 has no hits.

BO11901.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:20:03 Download gff for BO11901.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS15-PA 1..447 16..462 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:49:10 Download gff for BO11901.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8332-PA 1..447 16..462 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:38:26 Download gff for BO11901.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS15-RA 34..482 13..462 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:17:02 Download gff for BO11901.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS15-RA 34..482 13..462 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:17:02 Download gff for BO11901.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16570257..16570384 13..141 97 <- Plus
2R 16570626..16570848 142..364 100 <- Plus
2R 16570917..16571005 365..453 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:38:26 Download gff for BO11901.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12457762..12457889 13..141 97 <- Plus
arm_2R 12458131..12458353 142..364 100 <- Plus
arm_2R 12458422..12458510 365..453 100 <- Plus

BO11901.5prime Sequence

476 bp (475 high quality bases) assembled on 2006-04-19

> BO11901.5prime
GAAGTTATCAGTCGACATGGCCGATCAAGTCGATGAAAATCTGAAGAAGA
AGCGTACCTTCAAGAAGTTCACCTACCGCGGTGTCGACTTGGACCAGCTT
CTGGACATGCCCAACAACCAGCTGGTGGAGCTGATGCACAGCCGTGCCCG
CAGGCGTTTCTCCCGCGGACTGAAGCGCAAGCCAATGGCTCTGATCAAGA
AGCTGCGCAAGGCCAAGAAGGAGGCACCGCCAAATGAGAAGCCCGAGATT
GTCAAGACCCACCTGAGGAACATGATCATCGTACCCGAGATGACCGGCTC
CATCATTGGCGTCTACAACGGCAAGGACTTCGGACAGGTGGAGGTCAAGC
CCGAGATGATCGGTCACTACCTGGGCGAGTTCGCCCTGACCTACAAGCCC
GTCAAGCACGGTCGTCCTGGTATCGGTGCCACCCACAGCTCCCGTTTCAT
TCCTCTGAAGGCAAGCTTTCTAGACC

BO11901.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8332-PA 447 RpS15-RA 1..444 17..460 2220 100 Plus
CG8332-PB 444 RpS15-RB 7..441 26..460 2175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
RpS15-RA 627 CG8332-RA 34..477 17..460 2220 100 Plus
RpS15-RB 726 CG8332-RB 226..660 26..460 2175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:41:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16570624..16570848 339..115 1125 100 Minus
2R 25286936 2R 16570262..16570388 460..334 635 100 Minus
2R 25286936 2R 16570917..16571005 114..26 445 100 Minus
Blast to na_te.dros performed on 2015-02-12 16:41:51 has no hits.

BO11901.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:20:04 Download gff for BO11901.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS15-PA 1..447 17..463 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:49:11 Download gff for BO11901.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8332-PA 1..447 17..463 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 18:35:32 Download gff for BO11901.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS15-RA 34..482 17..466 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:40:43 Download gff for BO11901.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS15-RA 34..482 17..466 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:40:43 Download gff for BO11901.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16570626..16570848 115..337 100 <- Minus
2R 16570917..16571005 26..114 100 <- Minus
2R 16570257..16570384 338..466 97 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 18:35:32 Download gff for BO11901.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12457762..12457889 338..466 97 <- Minus
arm_2R 12458131..12458353 115..337 100 <- Minus
arm_2R 12458422..12458510 26..114 100 <- Minus

BO11901.complete Sequence

478 bp assembled on 2006-10-11

GenBank Submission: FJ632238

> BO11901.complete
GAAGTTATCAGTCGACATGGCCGATCAAGTCGATGAAAATCTGAAGAAGA
AGCGTACCTTCAAGAAGTTCACCTACCGCGGTGTCGACTTGGACCAGCTT
CTGGACATGCCCAACAACCAGCTGGTGGAGCTGATGCACAGCCGTGCCCG
CAGGCGTTTCTCCCGCGGACTGAAGCGCAAGCCAATGGCTCTGATCAAGA
AGCTGCGCAAGGCCAAGAAGGAGGCACCGCCAAATGAGAAGCCCGAGATT
GTCAAGACCCACCTGAGGAACATGATCATCGTACCCGAGATGACCGGCTC
CATCATTGGCGTCTACAACGGCAAGGACTTCGGACAGGTGGAGGTCAAGC
CCGAGATGATCGGTCACTACCTGGGCGAGTTCGCCCTGACCTACAAGCCC
GTCAAGCACGGTCGTCCTGGTATCGGTGCCACCCACAGCTCCCGTTTCAT
TCCTCTGAAGGCAAGCTTTCTAGACCAT

BO11901.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:23:05
Subject Length Description Subject Range Query Range Score Percent Strand
RpS15-RA 447 CG8332-PA 1..444 17..460 2220 100 Plus
RpS15-RB 444 CG8332-PB 7..441 26..460 2175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
RpS15-RA 627 CG8332-RA 34..477 17..460 2220 100 Plus
RpS15-RB 726 CG8332-RB 226..660 26..460 2175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16570624..16570848 339..115 1125 100 Minus
2R 25286936 2R 16570262..16570388 460..334 635 100 Minus
2R 25286936 2R 16570917..16571005 114..26 445 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:23:04 has no hits.

BO11901.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:54 Download gff for BO11901.complete
Subject Subject Range Query Range Percent Splice Strand
RpS15-RA 1..447 17..463 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:14:56 Download gff for BO11901.complete
Subject Subject Range Query Range Percent Splice Strand
RpS15-RA 41..489 17..466 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:16 Download gff for BO11901.complete
Subject Subject Range Query Range Percent Splice Strand
RpS15-RA 34..477 17..462 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:55 Download gff for BO11901.complete
Subject Subject Range Query Range Percent Splice Strand
RpS15-RA 41..489 17..466 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:27 Download gff for BO11901.complete
Subject Subject Range Query Range Percent Splice Strand
RpS15-RA 34..477 17..462 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:27 Download gff for BO11901.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16570259..16570384 338..462 98 <- Minus
2R 16570626..16570848 115..337 100 <- Minus
2R 16570917..16571011 17..114 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:16 Download gff for BO11901.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12458422..12458516 17..114 95   Minus
arm_2R 12457764..12457889 338..462 98 <- Minus
arm_2R 12458131..12458353 115..337 100 <- Minus

BO11901.pep Sequence

Translation from 16 to 478

> BO11901.pep
MADQVDENLKKKRTFKKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSR
GLKRKPMALIKKLRKAKKEAPPNEKPEIVKTHLRNMIIVPEMTGSIIGVY
NGKDFGQVEVKPEMIGHYLGEFALTYKPVKHGRPGIGATHSSRFIPLKAS
FLDH

BO11901.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:37:52
Subject Length Description Subject Range Query Range Score Percent Strand
RpS15-PA 148 CG8332-PA 1..148 1..148 769 100 Plus
RpS15-PB 147 CG8332-PB 3..147 4..148 754 100 Plus