Clone Sequence Records
BO11902.3prime Sequence
912 bp (804 high quality bases) assembled on 2006-04-19
> BO11902.3prime
ATGGTCTAGAAAGCTTGCCATCGAAGGCAGATAGGGCCAGGAGAAACTGT
TGCCGCTCAGCAGCATATCGCGTATCAGCGTTTCAATTGGCGTTTTTCCG
ACTAGACGCACAAAAAACAATTGCTCAATGACTTGTGAGGAGACCGTTCG
CAGCGATGGCAGTCTGAGAAGCAGCTTGCCGAATCTCGTGGGCTGGTTGG
GATACTGGGTCCGGCAGTATTCCTCGAGGGCGCACTGCGACTTCTCTTGC
AGGGATTCAATGTGCGTCACATCGGACAGGCCGCAGGCATCGGTGGTGAA
GAGCACGATCGCCTTGAGGCAGGAGTACTCCGCGGAGTCGACATGCAGCG
CCTTCAGCTTCTCCACCTGCTCCTGGAAGATGCGGATGTGGTCCATGAAG
GCCACCACACGATCGGCGGCCATCGGGGAGGCATGAAGTCCGGCGGCGGC
CAGCAGTGGCGCCACATGGAGCGGCATGGAGCACTGGCTGGCGTTTAGGA
CGAAGAGCTCTGACCAGACGAGCCGGAGCAGGGCCACCTGGTCGGTCACC
TGCAGCTCCGGGAAGAAGGGTATGTTCTTGGCCCACTCGACCGCCGAGAA
GAGCAGTCGGGCGGCCAGTTCGCAGATGTTGTCGATGCCCATAATGTTGT
TGGGTTGCATGCACTGGCCATATCGCGAAGTCGGATACGGTTCCGCCCGC
AGCAGGAGCGAGATGTAGGAACTGAGGTACGAGTGCCCGTTAAAGCCGGC
AATGCCCATGGGATCCCCGTTGGCAATCTGGTACTGCCCATGCATGCCGG
CCAGACCGGGCTGAGTGGGTGGTACGCGTCCACGTTGAACAGCTTCGCGT
CTCATGCCCATTTTGAGGCACTTCTTCAATCCACAATATTGACATTGATT
GCGATGGGGTTG
BO11902.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11502-PB | 1632 | svp-RB | 741..1629 | 907..19 | 4420 | 99.8 | Minus |
CG11502-PC | 846 | svp-RC | 1..843 | 861..19 | 4215 | 100 | Minus |
CG11502-PA | 2241 | svp-RA | 741..1357 | 907..291 | 3060 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:57:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
svp-RE | 3859 | CG11502-RE | 1179..2072 | 912..19 | 4440 | 99.8 | Minus |
svp-RB | 3859 | CG11502-RB | 1179..2072 | 912..19 | 4440 | 99.8 | Minus |
svp-RC | 2876 | CG11502-RC | 196..1089 | 912..19 | 4440 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:57:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12294006..12294559 | 844..291 | 2770 | 100 | Minus |
3R | 32079331 | 3R | 12300478..12300638 | 291..131 | 805 | 100 | Minus |
3R | 32079331 | 3R | 12300885..12300998 | 132..19 | 570 | 100 | Minus |
3R | 32079331 | 3R | 12290289..12290358 | 912..843 | 320 | 97.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:57:43 has no hits.
BO11902.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:20:05 Download gff for
BO11902.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-PB | 736..1632 | 16..912 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:49:12 Download gff for
BO11902.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11502-PB | 736..1632 | 16..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:50:53 Download gff for
BO11902.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-RC | 196..1089 | 19..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:14:20 Download gff for
BO11902.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-RC | 196..1089 | 19..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:14:20 Download gff for
BO11902.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12290289..12290358 | 843..912 | 97 | -> | Minus |
3R | 12294008..12294559 | 291..842 | 100 | -> | Minus |
3R | 12300479..12300636 | 133..290 | 100 | -> | Minus |
3R | 12300885..12300998 | 19..132 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:50:53 Download gff for
BO11902.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8116011..8116080 | 843..912 | 97 | -> | Minus |
arm_3R | 8119730..8120281 | 291..842 | 100 | -> | Minus |
arm_3R | 8126201..8126358 | 133..290 | 100 | -> | Minus |
arm_3R | 8126607..8126720 | 19..132 | 100 | | Minus |
BO11902.5prime Sequence
863 bp (772 high quality bases) assembled on 2006-04-19
> BO11902.5prime
GAAGTTATCAGTCGACATGTGCGCCTCCCCGTCCACGGCTCCCGGCTTCT
TCAATCCGCGCCCGCAATCCGGCGCGGAGCTGTCGGCCTTCGACATCGGC
CTGTCCCGCTCGATGGGGCTGGGCGTCCCGCCACACAGCGCCTGGCACGA
ACCGCCGGCCTCCCTCGGCGGTCACCTGCACGCCGCCTCCGCCGGACCGG
GCACCACCACCGGCAGCGTGGCGACGGGCGGCGGCGGTACCACTCCGAGC
AGCGTGGCCAGCCAGCAGTCGGCGGTGATCAAGCAGGATCTCTCTTGCCC
CAGCCTCAATCAGGCGGGATCCGGCCATCATCCTGGCATCAAGGAGGATC
TGTCCAGCAGCCTGCCCAGCGCCAATGGTGGATCCGCCGGTGGCCATCAC
TCCGGTTCCGGATCGGGTTCCGGTTCGGGCGTCAATCCCGGACACGGCTC
CGACATGCTGCCCCTGATCAAGGGCCATGGCCAGGACATGCTCACCAGCA
TCAAGGGACAGCCCACGGGCTGTGGCAGCACCACGCCCAGCTCCCAGGCG
AATAGCTCCCACTCGCAGAGCAGCAACAGTGGATCCCAGATCGACAGCAA
GCAGAACATCGAGTGCGTCGTCTACGGCGACAAGAGTTCCGGCAAGCACT
ACGGACAATTTACCTGCGAAGGTTGCAAATCTTTCTTCAAGCGCTCGGTG
CGACGTAATCTAACTTACTCTTGCCGCGGCAGCAGAAACTGTCCCATAGA
TCAACACCATCGCAATCAATGTCAATATTGTCGATTGAAGAAGTGCCTCA
AAATGGGCATGAGACGCGAAGCTGTTCAACGTGGACGCGTACCACCCACT
CAGCCCGGTCTGG
BO11902.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11502-PA | 2241 | svp-RA | 1..847 | 17..863 | 4210 | 99.8 | Plus |
CG11502-PB | 1632 | svp-RB | 1..847 | 17..863 | 4210 | 99.8 | Plus |
CG11502-PC | 846 | svp-RC | 1..61 | 803..863 | 305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:05:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
svp-RE | 3859 | CG11502-RE | 443..1290 | 16..863 | 4225 | 99.9 | Plus |
svp-RB | 3859 | CG11502-RB | 443..1290 | 16..863 | 4225 | 99.9 | Plus |
svp-RA | 3421 | CG11502-RA | 485..1332 | 16..863 | 4225 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:05:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12281594..12282251 | 16..673 | 3275 | 99.8 | Plus |
3R | 32079331 | 3R | 12290207..12290358 | 670..821 | 760 | 100 | Plus |
3R | 32079331 | 3R | 12294006..12294049 | 820..863 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:05:51 has no hits.
BO11902.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:20:06 Download gff for
BO11902.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-PA | 1..847 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:49:14 Download gff for
BO11902.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11502-PB | 1..847 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:55:11 Download gff for
BO11902.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-RA | 482..1332 | 13..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:41:49 Download gff for
BO11902.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-RA | 482..1332 | 13..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:41:49 Download gff for
BO11902.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12281591..12282249 | 13..671 | 99 | -> | Plus |
3R | 12290209..12290358 | 672..821 | 100 | -> | Plus |
3R | 12294008..12294049 | 822..863 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:55:11 Download gff for
BO11902.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8107313..8107971 | 13..671 | 99 | -> | Plus |
arm_3R | 8115931..8116080 | 672..821 | 100 | -> | Plus |
arm_3R | 8119730..8119771 | 822..863 | 100 | | Plus |
BO11902.complete Sequence
1663 bp assembled on 2007-06-22
GenBank Submission: FJ632239
> BO11902.complete
GAAGTTATCAGTCGACATGTGCGCCTCCCCGTCCACGGCTCCCGGCTTCT
TCAATCCGCGCCCGCAATCCGGCGCGGAGCTGTCGGCCTTCGACATCGGC
CTGTCCCGCTCGATGGGGCTGGGCGTCCCGCCACACAGCGCCTGGCACGA
ACCGCCGGCCTCCCTCGGCGGTCACCTGCACGCCGCCTCCGCCGGACCGG
GCACCACCACCGGCAGCGTGGCGACGGGCGGCGGCGGTACCACTCCGAGC
AGCGTGGCCAGCCAGCAGTCGGCGGTGATCAAGCAGGATCTCTCTTGCCC
CAGCCTCAATCAGGCGGGATCCGGCCATCATCCTGGCATCAAGGAGGATC
TGTCCAGCAGCCTGCCCAGCGCCAATGGTGGATCCGCCGGTGGCCATCAC
TCCGGTTCCGGATCGGGTTCCGGTTCGGGCGTCAATCCCGGACACGGCTC
CGACATGCTGCCCCTGATCAAGGGCCATGGCCAGGACATGCTCACCAGCA
TCAAGGGACAGCCCACGGGCTGTGGCAGCACCACGCCCAGCTCCCAGGCG
AATAGCTCCCACTCGCAGAGCAGCAACAGTGGATCCCAGATCGACAGCAA
GCAGAACATCGAGTGCGTCGTCTACGGCGACAAGAGTTCCGGCAAGCACT
ACGGACAATTTACCTGCGAAGGTTGCAAATCTTTCTTCAAGCGCTCGGTG
CGACGTAATCTAACTTACTCTTGCCGCGGCAGCAGAAACTGTCCCATAGA
TCAACACCATCGCAATCAATGTCAATATTGTCGATTGAAGAAGTGCCTCA
AAATGGGCATGAGACGCGAAGCTGTTCAACGTGGACGCGTACCACCCACT
CAGCCCGGTCTGGCCGGCATGCATGGGCAGTACCAGATTGCCAACGGGGA
TCCCATGGGCATTGCCGGCTTTAACGGGCACTCGTACCTCAGTTCCTACA
TCTCGCTCCTGCTGCGGGCGGAACCGTATCCGACTTCGCGATATGGCCAG
TGCATGCAACCCAACAACATTATGGGCATCGACAACATCTGCGAACTGGC
CGCCCGACTGCTCTTCTCGGCGGTCGAGTGGGCCAAGAACATACCCTTCT
TCCCGGAGCTGCAGGTGACCGACCAGGTGGCCCTGCTCCGGCTCGTCTGG
TCAGAGCTCTTCGTCCTAAACGCCAGCCAGTGCTCCATGCCGCTCCATGT
GGCGCCACTGCTGGCCGCCGCCGGACTTCATGCCTCCCCGATGGCCGCCG
ATCGTGTGGTGGCCTTCATGGACCACATCCGCATCTTCCAGGAGCAGGTG
GAGAAGCTGAAGGCGCTGCATGTCGACTCCGCGGAGTACTCCTGCCTCAA
GGCGATCGTGCTCTTCACCACCGATGCCTGCGGCCTGTCCGATGTGACGC
ACATTGAATCCCTGCAAGAGAAGTCGCAGTGCGCCCTCGAGGAATACTGC
CGGACCCAGTATCCCAACCAGCCCACGAGATTCGGCAAGCTGCTTCTCAG
ACTGCCATCGCTGCGAACGGTCTCCTCACAAGTCATTGAGCAATTGTTTT
TTGTGCGTCTAGTCGGAAAAACGCCAATTGAAACGCTGATACGCGATATG
CTGCTGAGCGGCAACAGTTTCTCCTGGCCCTATCTGCCTTCGATGGCAAG
CTTTCTAGACCAT
BO11902.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:06:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
svp-RE | 1665 | CG11502-PE | 1..1629 | 17..1645 | 8130 | 99.9 | Plus |
svp-RB | 1632 | CG11502-PB | 1..1629 | 17..1645 | 8130 | 99.9 | Plus |
svp-RA | 2241 | CG11502-PA | 1..1357 | 17..1373 | 6770 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:06:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
svp-RE | 3859 | CG11502-RE | 443..2072 | 16..1645 | 8135 | 99.9 | Plus |
svp-RB | 3859 | CG11502-RB | 443..2072 | 16..1645 | 8135 | 99.9 | Plus |
svp-RA | 3421 | CG11502-RA | 485..1842 | 16..1373 | 6775 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:06:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12281594..12282251 | 16..673 | 3275 | 99.8 | Plus |
3R | 32079331 | 3R | 12294006..12294559 | 820..1373 | 2770 | 100 | Plus |
3R | 32079331 | 3R | 12300478..12300638 | 1373..1533 | 805 | 100 | Plus |
3R | 32079331 | 3R | 12290207..12290358 | 670..821 | 760 | 100 | Plus |
3R | 32079331 | 3R | 12300885..12300998 | 1532..1645 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:06:41 has no hits.
BO11902.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:34 Download gff for
BO11902.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-RB | 1..1632 | 17..1648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:48:44 Download gff for
BO11902.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-RB | 444..2072 | 17..1647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:59 Download gff for
BO11902.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-RB | 444..2072 | 17..1647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:34 Download gff for
BO11902.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-RB | 440..2072 | 13..1645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:11:09 Download gff for
BO11902.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
svp-RB | 444..2072 | 17..1647 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:11:09 Download gff for
BO11902.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12290209..12290358 | 672..821 | 100 | -> | Plus |
3R | 12281595..12282249 | 17..671 | 99 | -> | Plus |
3R | 12294008..12294559 | 822..1373 | 100 | -> | Plus |
3R | 12300479..12300636 | 1374..1531 | 100 | -> | Plus |
3R | 12300885..12300998 | 1532..1647 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:59 Download gff for
BO11902.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8107317..8107971 | 17..671 | 99 | -> | Plus |
arm_3R | 8115931..8116080 | 672..821 | 100 | -> | Plus |
arm_3R | 8119730..8120281 | 822..1373 | 100 | -> | Plus |
arm_3R | 8126201..8126358 | 1374..1531 | 100 | -> | Plus |
arm_3R | 8126607..8126720 | 1532..1647 | 98 | | Plus |
BO11902.pep Sequence
Translation from 16 to 1663
> BO11902.pep
MCASPSTAPGFFNPRPQSGAELSAFDIGLSRSMGLGVPPHSAWHEPPASL
GGHLHAASAGPGTTTGSVATGGGGTTPSSVASQQSAVIKQDLSCPSLNQA
GSGHHPGIKEDLSSSLPSANGGSAGGHHSGSGSGSGSGVNPGHGSDMLPL
IKGHGQDMLTSIKGQPTGCGSTTPSSQANSSHSQSSNSGSQIDSKQNIEC
VVYGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRNCPIDQHHRN
QCQYCRLKKCLKMGMRREAVQRGRVPPTQPGLAGMHGQYQIANGDPMGIA
GFNGHSYLSSYISLLLRAEPYPTSRYGQCMQPNNIMGIDNICELAARLLF
SAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA
AAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLF
TTDACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLR
TVSSQVIEQLFFVRLVGKTPIETLIRDMLLSGNSFSWPYLPSMASFLDH
BO11902.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
svp-PE | 554 | CG11502-PE | 1..543 | 1..543 | 2865 | 99.8 | Plus |
svp-PB | 543 | CG11502-PB | 1..543 | 1..543 | 2865 | 99.8 | Plus |
svp-PA | 746 | CG11502-PA | 1..452 | 1..452 | 2393 | 99.8 | Plus |
svp-PC | 281 | CG11502-PC | 1..281 | 263..543 | 1458 | 100 | Plus |
Hnf4-PB | 732 | CG9310-PB | 28..498 | 72..532 | 585 | 32.9 | Plus |