Clone BO11902 Report

Search the DGRC for BO11902

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:119
Well:2
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO11902.pep: validated not full length
Sequenced Size:1663

Clone Sequence Records

BO11902.3prime Sequence

912 bp (804 high quality bases) assembled on 2006-04-19

> BO11902.3prime
ATGGTCTAGAAAGCTTGCCATCGAAGGCAGATAGGGCCAGGAGAAACTGT
TGCCGCTCAGCAGCATATCGCGTATCAGCGTTTCAATTGGCGTTTTTCCG
ACTAGACGCACAAAAAACAATTGCTCAATGACTTGTGAGGAGACCGTTCG
CAGCGATGGCAGTCTGAGAAGCAGCTTGCCGAATCTCGTGGGCTGGTTGG
GATACTGGGTCCGGCAGTATTCCTCGAGGGCGCACTGCGACTTCTCTTGC
AGGGATTCAATGTGCGTCACATCGGACAGGCCGCAGGCATCGGTGGTGAA
GAGCACGATCGCCTTGAGGCAGGAGTACTCCGCGGAGTCGACATGCAGCG
CCTTCAGCTTCTCCACCTGCTCCTGGAAGATGCGGATGTGGTCCATGAAG
GCCACCACACGATCGGCGGCCATCGGGGAGGCATGAAGTCCGGCGGCGGC
CAGCAGTGGCGCCACATGGAGCGGCATGGAGCACTGGCTGGCGTTTAGGA
CGAAGAGCTCTGACCAGACGAGCCGGAGCAGGGCCACCTGGTCGGTCACC
TGCAGCTCCGGGAAGAAGGGTATGTTCTTGGCCCACTCGACCGCCGAGAA
GAGCAGTCGGGCGGCCAGTTCGCAGATGTTGTCGATGCCCATAATGTTGT
TGGGTTGCATGCACTGGCCATATCGCGAAGTCGGATACGGTTCCGCCCGC
AGCAGGAGCGAGATGTAGGAACTGAGGTACGAGTGCCCGTTAAAGCCGGC
AATGCCCATGGGATCCCCGTTGGCAATCTGGTACTGCCCATGCATGCCGG
CCAGACCGGGCTGAGTGGGTGGTACGCGTCCACGTTGAACAGCTTCGCGT
CTCATGCCCATTTTGAGGCACTTCTTCAATCCACAATATTGACATTGATT
GCGATGGGGTTG

BO11902.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG11502-PB 1632 svp-RB 741..1629 907..19 4420 99.8 Minus
CG11502-PC 846 svp-RC 1..843 861..19 4215 100 Minus
CG11502-PA 2241 svp-RA 741..1357 907..291 3060 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:57:46
Subject Length Description Subject Range Query Range Score Percent Strand
svp-RE 3859 CG11502-RE 1179..2072 912..19 4440 99.8 Minus
svp-RB 3859 CG11502-RB 1179..2072 912..19 4440 99.8 Minus
svp-RC 2876 CG11502-RC 196..1089 912..19 4440 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:57:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12294006..12294559 844..291 2770 100 Minus
3R 32079331 3R 12300478..12300638 291..131 805 100 Minus
3R 32079331 3R 12300885..12300998 132..19 570 100 Minus
3R 32079331 3R 12290289..12290358 912..843 320 97.1 Minus
Blast to na_te.dros performed on 2015-02-10 22:57:43 has no hits.

BO11902.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:20:05 Download gff for BO11902.3prime
Subject Subject Range Query Range Percent Splice Strand
svp-PB 736..1632 16..912 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:49:12 Download gff for BO11902.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11502-PB 736..1632 16..912 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:50:53 Download gff for BO11902.3prime
Subject Subject Range Query Range Percent Splice Strand
svp-RC 196..1089 19..912 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:14:20 Download gff for BO11902.3prime
Subject Subject Range Query Range Percent Splice Strand
svp-RC 196..1089 19..912 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:14:20 Download gff for BO11902.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12290289..12290358 843..912 97 -> Minus
3R 12294008..12294559 291..842 100 -> Minus
3R 12300479..12300636 133..290 100 -> Minus
3R 12300885..12300998 19..132 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:50:53 Download gff for BO11902.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8116011..8116080 843..912 97 -> Minus
arm_3R 8119730..8120281 291..842 100 -> Minus
arm_3R 8126201..8126358 133..290 100 -> Minus
arm_3R 8126607..8126720 19..132 100   Minus

BO11902.5prime Sequence

863 bp (772 high quality bases) assembled on 2006-04-19

> BO11902.5prime
GAAGTTATCAGTCGACATGTGCGCCTCCCCGTCCACGGCTCCCGGCTTCT
TCAATCCGCGCCCGCAATCCGGCGCGGAGCTGTCGGCCTTCGACATCGGC
CTGTCCCGCTCGATGGGGCTGGGCGTCCCGCCACACAGCGCCTGGCACGA
ACCGCCGGCCTCCCTCGGCGGTCACCTGCACGCCGCCTCCGCCGGACCGG
GCACCACCACCGGCAGCGTGGCGACGGGCGGCGGCGGTACCACTCCGAGC
AGCGTGGCCAGCCAGCAGTCGGCGGTGATCAAGCAGGATCTCTCTTGCCC
CAGCCTCAATCAGGCGGGATCCGGCCATCATCCTGGCATCAAGGAGGATC
TGTCCAGCAGCCTGCCCAGCGCCAATGGTGGATCCGCCGGTGGCCATCAC
TCCGGTTCCGGATCGGGTTCCGGTTCGGGCGTCAATCCCGGACACGGCTC
CGACATGCTGCCCCTGATCAAGGGCCATGGCCAGGACATGCTCACCAGCA
TCAAGGGACAGCCCACGGGCTGTGGCAGCACCACGCCCAGCTCCCAGGCG
AATAGCTCCCACTCGCAGAGCAGCAACAGTGGATCCCAGATCGACAGCAA
GCAGAACATCGAGTGCGTCGTCTACGGCGACAAGAGTTCCGGCAAGCACT
ACGGACAATTTACCTGCGAAGGTTGCAAATCTTTCTTCAAGCGCTCGGTG
CGACGTAATCTAACTTACTCTTGCCGCGGCAGCAGAAACTGTCCCATAGA
TCAACACCATCGCAATCAATGTCAATATTGTCGATTGAAGAAGTGCCTCA
AAATGGGCATGAGACGCGAAGCTGTTCAACGTGGACGCGTACCACCCACT
CAGCCCGGTCTGG

BO11902.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG11502-PA 2241 svp-RA 1..847 17..863 4210 99.8 Plus
CG11502-PB 1632 svp-RB 1..847 17..863 4210 99.8 Plus
CG11502-PC 846 svp-RC 1..61 803..863 305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
svp-RE 3859 CG11502-RE 443..1290 16..863 4225 99.9 Plus
svp-RB 3859 CG11502-RB 443..1290 16..863 4225 99.9 Plus
svp-RA 3421 CG11502-RA 485..1332 16..863 4225 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:05:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12281594..12282251 16..673 3275 99.8 Plus
3R 32079331 3R 12290207..12290358 670..821 760 100 Plus
3R 32079331 3R 12294006..12294049 820..863 220 100 Plus
Blast to na_te.dros performed on 2015-02-12 20:05:51 has no hits.

BO11902.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:20:06 Download gff for BO11902.5prime
Subject Subject Range Query Range Percent Splice Strand
svp-PA 1..847 17..863 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:49:14 Download gff for BO11902.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11502-PB 1..847 17..863 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:55:11 Download gff for BO11902.5prime
Subject Subject Range Query Range Percent Splice Strand
svp-RA 482..1332 13..863 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:41:49 Download gff for BO11902.5prime
Subject Subject Range Query Range Percent Splice Strand
svp-RA 482..1332 13..863 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:41:49 Download gff for BO11902.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12281591..12282249 13..671 99 -> Plus
3R 12290209..12290358 672..821 100 -> Plus
3R 12294008..12294049 822..863 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:55:11 Download gff for BO11902.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8107313..8107971 13..671 99 -> Plus
arm_3R 8115931..8116080 672..821 100 -> Plus
arm_3R 8119730..8119771 822..863 100   Plus

BO11902.complete Sequence

1663 bp assembled on 2007-06-22

GenBank Submission: FJ632239

> BO11902.complete
GAAGTTATCAGTCGACATGTGCGCCTCCCCGTCCACGGCTCCCGGCTTCT
TCAATCCGCGCCCGCAATCCGGCGCGGAGCTGTCGGCCTTCGACATCGGC
CTGTCCCGCTCGATGGGGCTGGGCGTCCCGCCACACAGCGCCTGGCACGA
ACCGCCGGCCTCCCTCGGCGGTCACCTGCACGCCGCCTCCGCCGGACCGG
GCACCACCACCGGCAGCGTGGCGACGGGCGGCGGCGGTACCACTCCGAGC
AGCGTGGCCAGCCAGCAGTCGGCGGTGATCAAGCAGGATCTCTCTTGCCC
CAGCCTCAATCAGGCGGGATCCGGCCATCATCCTGGCATCAAGGAGGATC
TGTCCAGCAGCCTGCCCAGCGCCAATGGTGGATCCGCCGGTGGCCATCAC
TCCGGTTCCGGATCGGGTTCCGGTTCGGGCGTCAATCCCGGACACGGCTC
CGACATGCTGCCCCTGATCAAGGGCCATGGCCAGGACATGCTCACCAGCA
TCAAGGGACAGCCCACGGGCTGTGGCAGCACCACGCCCAGCTCCCAGGCG
AATAGCTCCCACTCGCAGAGCAGCAACAGTGGATCCCAGATCGACAGCAA
GCAGAACATCGAGTGCGTCGTCTACGGCGACAAGAGTTCCGGCAAGCACT
ACGGACAATTTACCTGCGAAGGTTGCAAATCTTTCTTCAAGCGCTCGGTG
CGACGTAATCTAACTTACTCTTGCCGCGGCAGCAGAAACTGTCCCATAGA
TCAACACCATCGCAATCAATGTCAATATTGTCGATTGAAGAAGTGCCTCA
AAATGGGCATGAGACGCGAAGCTGTTCAACGTGGACGCGTACCACCCACT
CAGCCCGGTCTGGCCGGCATGCATGGGCAGTACCAGATTGCCAACGGGGA
TCCCATGGGCATTGCCGGCTTTAACGGGCACTCGTACCTCAGTTCCTACA
TCTCGCTCCTGCTGCGGGCGGAACCGTATCCGACTTCGCGATATGGCCAG
TGCATGCAACCCAACAACATTATGGGCATCGACAACATCTGCGAACTGGC
CGCCCGACTGCTCTTCTCGGCGGTCGAGTGGGCCAAGAACATACCCTTCT
TCCCGGAGCTGCAGGTGACCGACCAGGTGGCCCTGCTCCGGCTCGTCTGG
TCAGAGCTCTTCGTCCTAAACGCCAGCCAGTGCTCCATGCCGCTCCATGT
GGCGCCACTGCTGGCCGCCGCCGGACTTCATGCCTCCCCGATGGCCGCCG
ATCGTGTGGTGGCCTTCATGGACCACATCCGCATCTTCCAGGAGCAGGTG
GAGAAGCTGAAGGCGCTGCATGTCGACTCCGCGGAGTACTCCTGCCTCAA
GGCGATCGTGCTCTTCACCACCGATGCCTGCGGCCTGTCCGATGTGACGC
ACATTGAATCCCTGCAAGAGAAGTCGCAGTGCGCCCTCGAGGAATACTGC
CGGACCCAGTATCCCAACCAGCCCACGAGATTCGGCAAGCTGCTTCTCAG
ACTGCCATCGCTGCGAACGGTCTCCTCACAAGTCATTGAGCAATTGTTTT
TTGTGCGTCTAGTCGGAAAAACGCCAATTGAAACGCTGATACGCGATATG
CTGCTGAGCGGCAACAGTTTCTCCTGGCCCTATCTGCCTTCGATGGCAAG
CTTTCTAGACCAT

BO11902.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:06:42
Subject Length Description Subject Range Query Range Score Percent Strand
svp-RE 1665 CG11502-PE 1..1629 17..1645 8130 99.9 Plus
svp-RB 1632 CG11502-PB 1..1629 17..1645 8130 99.9 Plus
svp-RA 2241 CG11502-PA 1..1357 17..1373 6770 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
svp-RE 3859 CG11502-RE 443..2072 16..1645 8135 99.9 Plus
svp-RB 3859 CG11502-RB 443..2072 16..1645 8135 99.9 Plus
svp-RA 3421 CG11502-RA 485..1842 16..1373 6775 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12281594..12282251 16..673 3275 99.8 Plus
3R 32079331 3R 12294006..12294559 820..1373 2770 100 Plus
3R 32079331 3R 12300478..12300638 1373..1533 805 100 Plus
3R 32079331 3R 12290207..12290358 670..821 760 100 Plus
3R 32079331 3R 12300885..12300998 1532..1645 570 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:06:41 has no hits.

BO11902.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:34 Download gff for BO11902.complete
Subject Subject Range Query Range Percent Splice Strand
svp-RB 1..1632 17..1648 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:48:44 Download gff for BO11902.complete
Subject Subject Range Query Range Percent Splice Strand
svp-RB 444..2072 17..1647 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:59 Download gff for BO11902.complete
Subject Subject Range Query Range Percent Splice Strand
svp-RB 444..2072 17..1647 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:34 Download gff for BO11902.complete
Subject Subject Range Query Range Percent Splice Strand
svp-RB 440..2072 13..1645 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:11:09 Download gff for BO11902.complete
Subject Subject Range Query Range Percent Splice Strand
svp-RB 444..2072 17..1647 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:11:09 Download gff for BO11902.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12290209..12290358 672..821 100 -> Plus
3R 12281595..12282249 17..671 99 -> Plus
3R 12294008..12294559 822..1373 100 -> Plus
3R 12300479..12300636 1374..1531 100 -> Plus
3R 12300885..12300998 1532..1647 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:59 Download gff for BO11902.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8107317..8107971 17..671 99 -> Plus
arm_3R 8115931..8116080 672..821 100 -> Plus
arm_3R 8119730..8120281 822..1373 100 -> Plus
arm_3R 8126201..8126358 1374..1531 100 -> Plus
arm_3R 8126607..8126720 1532..1647 98   Plus

BO11902.pep Sequence

Translation from 16 to 1663

> BO11902.pep
MCASPSTAPGFFNPRPQSGAELSAFDIGLSRSMGLGVPPHSAWHEPPASL
GGHLHAASAGPGTTTGSVATGGGGTTPSSVASQQSAVIKQDLSCPSLNQA
GSGHHPGIKEDLSSSLPSANGGSAGGHHSGSGSGSGSGVNPGHGSDMLPL
IKGHGQDMLTSIKGQPTGCGSTTPSSQANSSHSQSSNSGSQIDSKQNIEC
VVYGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYSCRGSRNCPIDQHHRN
QCQYCRLKKCLKMGMRREAVQRGRVPPTQPGLAGMHGQYQIANGDPMGIA
GFNGHSYLSSYISLLLRAEPYPTSRYGQCMQPNNIMGIDNICELAARLLF
SAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA
AAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLF
TTDACGLSDVTHIESLQEKSQCALEEYCRTQYPNQPTRFGKLLLRLPSLR
TVSSQVIEQLFFVRLVGKTPIETLIRDMLLSGNSFSWPYLPSMASFLDH

BO11902.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
svp-PE 554 CG11502-PE 1..543 1..543 2865 99.8 Plus
svp-PB 543 CG11502-PB 1..543 1..543 2865 99.8 Plus
svp-PA 746 CG11502-PA 1..452 1..452 2393 99.8 Plus
svp-PC 281 CG11502-PC 1..281 263..543 1458 100 Plus
Hnf4-PB 732 CG9310-PB 28..498 72..532 585 32.9 Plus