Clone Sequence Records
BO11908.5prime Sequence
464 bp (463 high quality bases) assembled on 2006-04-19
> BO11908.5prime
GAAGTTATCAGTCGACATGTACAAATTCGTGTTGATCGCCAGCCTGCTGG
TCGCCCTCTGCATGGCAGCTCCTCCCCGCCAGGAATCCGAAGCCGAAAGG
ATAGAGAGGGAGGAGTACGAGAAATATCAGAATGAAAACGCCCAGTACTC
GTTCAATTCGAGTGTGGATGATAAGATCAACGATGGACAAATCTCACGTA
ATGAGGAGCGCGAAGGAGGCACTGTTCGTGGTTCCTACAGCTACTTCGAT
GGTTTCGTGAAGCGCCGTGTTGAGTACATCGCCGATAAGGACGGCTACAG
GGTGCTCAAGGACGAGATCGAGGATGTCGGCAATGGTCCTTCGTTCAATC
CCGATGGCATAGCCAACGTGGAGGGCTCTATGATCGGCAAATACTCCATC
AAACTGGATAAGGCCGACGATGACAAGCACTACAAGGACATTCATGCCGC
AAGCTTTCTAGACC
BO11908.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10112-PA | 435 | CG10112-RA | 1..432 | 17..448 | 2160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:30:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr51A-RA | 651 | CG10112-RA | 84..515 | 17..448 | 2160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:30:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14512695..14513066 | 448..77 | 1860 | 100 | Minus |
| 2R | 25286936 | 2R | 14515069..14515128 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:30:34 has no hits.
BO11908.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:20:15 Download gff for
BO11908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10112-PA | 1..435 | 17..449 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:49:25 Download gff for
BO11908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10112-PA | 1..435 | 17..449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:40:27 Download gff for
BO11908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr51A-RA | 76..515 | 9..448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:11:45 Download gff for
BO11908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr51A-RA | 76..515 | 9..448 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:11:45 Download gff for
BO11908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14512695..14513066 | 77..448 | 100 | <- | Minus |
| 2R | 14515069..14515136 | 9..76 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:40:27 Download gff for
BO11908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10400200..10400571 | 77..448 | 100 | <- | Minus |
| arm_2R | 10402574..10402641 | 9..76 | 94 | | Minus |
BO11908.3prime Sequence
464 bp (463 high quality bases) assembled on 2006-04-19
> BO11908.3prime
ATGGTCTAGAAAGCTTGCGGCATGAATGTCCTTGTAGTGCTTGTCATCGT
CGGCCTTATCCAGTTTGATGGAGTATTTGCCGATCATAGAGCCCTCCACG
TTGGCTATGCCATCGGGATTGAACGAAGGACCATTGCCGACATCCTCGAT
CTCGTCCTTGAGCACCCTGTAGCCGTCCTTATCGGCGATGTACTCAACAC
GGCGCTTCACGAAACCATCGAAGTAGCTGTAGGAACCACGAACAGTGCCT
CCTTCGCGCTCCTCATTACGTGAGATTTGTCCATCGTTGATCTTATCATC
CACACTCGAATTGAACGAGTACTGGGCGTTTTCATTCTGATATTTCTCGT
ACTCCTCCCTCTCTATCCTTTCGGCTTCGGATTCCTGGCGGGGAGGAGCT
GCCATGCAGAGGGCGACCAGCAGGCTGGCGATCAACACGAATTTGTACAT
GTCGACTGATAACT
BO11908.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:32:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10112-PA | 435 | CG10112-RA | 1..432 | 450..19 | 2160 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:22:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr51A-RA | 651 | CG10112-RA | 84..515 | 450..19 | 2160 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:22:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14512695..14513066 | 19..390 | 1860 | 100 | Plus |
| 2R | 25286936 | 2R | 14515069..14515128 | 391..450 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:22:22 has no hits.
BO11908.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:20:14 Download gff for
BO11908.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10112-PA | 1..435 | 18..450 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:49:24 Download gff for
BO11908.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10112-PA | 1..435 | 18..450 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 20:38:29 Download gff for
BO11908.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr51A-RA | 76..515 | 19..458 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:17:15 Download gff for
BO11908.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr51A-RA | 76..515 | 19..458 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:17:15 Download gff for
BO11908.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14512695..14513066 | 19..390 | 100 | <- | Plus |
| 2R | 14515069..14515136 | 391..458 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 20:38:29 Download gff for
BO11908.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10400200..10400571 | 19..390 | 100 | <- | Plus |
| arm_2R | 10402574..10402641 | 391..458 | 94 | | Plus |
BO11908.complete Sequence
466 bp assembled on 2006-10-11
GenBank Submission: FJ632240
> BO11908.complete
GAAGTTATCAGTCGACATGTACAAATTCGTGTTGATCGCCAGCCTGCTGG
TCGCCCTCTGCATGGCAGCTCCTCCCCGCCAGGAATCCGAAGCCGAAAGG
ATAGAGAGGGAGGAGTACGAGAAATATCAGAATGAAAACGCCCAGTACTC
GTTCAATTCGAGTGTGGATGATAAGATCAACGATGGACAAATCTCACGTA
ATGAGGAGCGCGAAGGAGGCACTGTTCGTGGTTCCTACAGCTACTTCGAT
GGTTTCGTGAAGCGCCGTGTTGAGTACATCGCCGATAAGGACGGCTACAG
GGTGCTCAAGGACGAGATCGAGGATGTCGGCAATGGTCCTTCGTTCAATC
CCGATGGCATAGCCAACGTGGAGGGCTCTATGATCGGCAAATACTCCATC
AAACTGGATAAGGCCGACGATGACAAGCACTACAAGGACATTCATGCCGC
AAGCTTTCTAGACCAT
BO11908.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:28:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr51A-RA | 435 | CG10112-PA | 1..432 | 17..448 | 2160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr51A-RA | 651 | CG10112-RA | 84..515 | 17..448 | 2160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14512695..14513066 | 448..77 | 1860 | 100 | Minus |
| 2R | 25286936 | 2R | 14515069..14515128 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:28:05 has no hits.
BO11908.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:02 Download gff for
BO11908.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr51A-RA | 1..435 | 17..449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:15:06 Download gff for
BO11908.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr51A-RA | 73..512 | 9..448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:54 Download gff for
BO11908.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr51A-RA | 84..515 | 17..450 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:02:02 Download gff for
BO11908.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr51A-RA | 73..512 | 9..448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:16 Download gff for
BO11908.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr51A-RA | 84..515 | 17..450 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:16 Download gff for
BO11908.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14512693..14513066 | 77..450 | 99 | <- | Minus |
| 2R | 14515069..14515128 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:54 Download gff for
BO11908.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10400198..10400571 | 77..450 | 99 | <- | Minus |
| arm_2R | 10402574..10402633 | 17..76 | 100 | | Minus |
BO11908.pep Sequence
Translation from 16 to 466
> BO11908.pep
MYKFVLIASLLVALCMAAPPRQESEAERIEREEYEKYQNENAQYSFNSSV
DDKINDGQISRNEEREGGTVRGSYSYFDGFVKRRVEYIADKDGYRVLKDE
IEDVGNGPSFNPDGIANVEGSMIGKYSIKLDKADDDKHYKDIHAASFLDH
BO11908.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:37:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr51A-PA | 144 | CG10112-PA | 1..144 | 1..144 | 750 | 100 | Plus |
