Clone Sequence Records
BO11909.3prime Sequence
883 bp (791 high quality bases) assembled on 2006-04-19
> BO11909.3prime
ATGGTCTAGAAAGCTTGCTCTCCGCTCCACGCGGCACAGCGGGTAATCCT
TAAGCTTCAGGGAGATATTACCCTTGACCAGCAGCTCCTCCAAGCGGGCC
TCCGTGCTGATTCGATAGCTGCGAAAGATCCTGGCCAGCAGCAATTTCAT
CAGCATTTGGGCATATCGGTAGCCTATGCACATGCGCAATCCCTTGGTGA
AGGGAACGAAGGCGAAGGCGTGCCTCTGAGGCGAATCCAATCCGAAATGC
GCATCCGGATTGTAGGTACGCGAAAGTGGTCCCCACACCCGTTCATCCCG
CTGCATGTTGTAGATATCGATGCCGATCTGAGTGCCACGCGGAATAAGGA
ACTCCCCGTCGCCGCGCTTCAGCTGGATGTCCTGATCCGCTGATCGCAGC
ACCATGGGCACCGGAGCAAACAGCCGCATGGCCTCGTTGATCACCATTTC
GGTGTACTCGAGTCGTTGGAGCTGCTCCAAGTTTATGTCGCCAGACGGCG
GCAGCTCTGTGACCAGTTCCTTGTGCAGCTTCTCCTGGTAGCAGGGATGC
ATTGCCAGGCAGAGGATGGTAAAGTACAATGCCGTCGATGTGGTCTCGAA
AGTCGCTGCAATGGTCACATTCGCCTCATCCCTCACATCCTGCCAACTCA
GCTGACCGCGCTCCACATGCTCCCTCACCTGCTCAATGAAAATGGCTTTG
GACTTGCCCCTCATCTCCATTTCGGATCGCTGCTGATCCGGATTGGAATT
GGCGGCCACTACCGAGACTATGGGTTCGAGAAGCTGTTCTATAAACCCAA
ACAGTATGCCGACGACCTTTTGCTGCAGGCGGAAAAGTCCGGAACGACGA
TATATTAAGTCAGGATAGAGCCACGGCGATAGC
BO11909.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9716-PA | 1509 | Cyp313b1-RA | 642..1506 | 883..19 | 4325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:50:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp313b1-RB | 2138 | CG9716-RB | 808..1672 | 883..19 | 4325 | 100 | Minus |
| Cyp313b1-RA | 2060 | CG9716-RA | 730..1594 | 883..19 | 4325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:49:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8643591..8644176 | 19..604 | 2930 | 100 | Plus |
| 3R | 32079331 | 3R | 8644226..8644409 | 604..787 | 920 | 100 | Plus |
| 3R | 32079331 | 3R | 8644469..8644568 | 784..883 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:49:57 has no hits.
BO11909.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:20:16 Download gff for
BO11909.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9716-PA | 642..1509 | 15..883 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:49:27 Download gff for
BO11909.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9716-PA | 642..1509 | 15..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:29:06 Download gff for
BO11909.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp313b1-RA | 730..1599 | 12..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:14:33 Download gff for
BO11909.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp313b1-RA | 730..1599 | 12..883 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:14:33 Download gff for
BO11909.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8643586..8644175 | 12..603 | 99 | <- | Plus |
| 3R | 8644226..8644405 | 604..783 | 100 | <- | Plus |
| 3R | 8644469..8644568 | 784..883 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:29:06 Download gff for
BO11909.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4469308..4469897 | 12..603 | 99 | <- | Plus |
| arm_3R | 4469948..4470127 | 604..783 | 100 | <- | Plus |
| arm_3R | 4470191..4470290 | 784..883 | 100 | | Plus |
BO11909.5prime Sequence
904 bp (832 high quality bases) assembled on 2006-04-19
> BO11909.5prime
GAAGTTATCAGTCGACATGCTGGCCAGCATCATTTTAAGCGGCTGGCTGC
TTTTGGCTTGGTTATACTTCCTGTGGAGCCGGCGAAGGTATTATAAAGTC
GCATGGCAGTTGCGCGGACCCATTGGCTGGCCACTAATAGGCATGGGCTT
ACAAATGATGAACCCGGAGACGTTTTTGCAGTACATGGATGGTCTGTCGC
GACAGTTTAAAGCGCCTTTCATCTCCTGGATGGGCACCAGTTGTTTCCTC
TACATCAACGATCCGCACAGCGTGGAGCAGATATTGAACTCGACGCACTG
CACCAATAAGGGCGATTTCTATCGGTTCATGAGCTCGGCCATTGGTGACG
GACTGTTTACGTCTAGTTCGCCACGTTGGCACAAACATCGTCGCCTCATT
AATCCCGCCTTTGGTCGCCAGATTCTCAGCAACTTCCTGCCCATTTTCAA
TGCCGAAGCAGAGGTCCTTCTGCAGAAGCTGGAGCTCGAGGGTGTGCAGC
ACGGTAAGCGGCTGGAAATCTACCAAATCCTTAAGAAAATCGTTTTGGAA
GCAGCTTGCCAGACAACGATGGGCAAGAAAATGAACTTCCAGCACGATGG
ATCTTTATGCATATTTAAAGCTTATAATGGCTTGACCGAAGTGTGTGTAA
AACGAATGCTATCGCCGTGGCTCTATCCTGACTTAATATATCGTCGTTCC
GGACTTTTCCGCCTGCAGCAAAAGGTCGTCGGCATACTGTTTGGGTTTAT
AGAACAGCTTCTCGAACCCATAGTCTCGGTAGTGGCCGCCAATTCCAATC
CGGATCAGCAGCGATCCGAAATGGAGATGAGGGGCAAAGCCAAAGCCATT
TTCATTGAGCAGGTGAGGGAGCATGTGGAGCGCGGTCAGCTGATTTGGCA
GGAT
BO11909.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9716-PA | 1509 | Cyp313b1-RA | 1..888 | 17..904 | 4365 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:59:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp313b1-RB | 2138 | CG9716-RB | 162..1054 | 12..904 | 4420 | 99.7 | Plus |
| Cyp313b1-RA | 2060 | CG9716-RA | 84..976 | 12..904 | 4420 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:59:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8644772..8645161 | 560..171 | 1950 | 100 | Minus |
| 3R | 32079331 | 3R | 8645217..8645375 | 170..12 | 795 | 100 | Minus |
| 3R | 32079331 | 3R | 8644259..8644409 | 904..754 | 710 | 98 | Minus |
| 3R | 32079331 | 3R | 8644469..8644596 | 757..630 | 640 | 100 | Minus |
| 3R | 32079331 | 3R | 8644648..8644717 | 630..561 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:59:27 has no hits.
BO11909.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:20:18 Download gff for
BO11909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9716-PA | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:49:28 Download gff for
BO11909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9716-PA | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:27:20 Download gff for
BO11909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp313b1-RA | 74..976 | 1..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:13:29 Download gff for
BO11909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp313b1-RA | 74..976 | 1..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:13:29 Download gff for
BO11909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8645217..8645381 | 1..170 | 97 | | Minus |
| 3R | 8644259..8644405 | 758..904 | 97 | <- | Minus |
| 3R | 8644469..8644595 | 631..757 | 100 | <- | Minus |
| 3R | 8644648..8644717 | 561..630 | 100 | <- | Minus |
| 3R | 8644772..8645161 | 171..560 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:27:20 Download gff for
BO11909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4469981..4470127 | 758..904 | 97 | <- | Minus |
| arm_3R | 4470191..4470317 | 631..757 | 100 | <- | Minus |
| arm_3R | 4470370..4470439 | 561..630 | 100 | <- | Minus |
| arm_3R | 4470494..4470883 | 171..560 | 100 | <- | Minus |
| arm_3R | 4470939..4471103 | 1..170 | 97 | | Minus |
BO11909.complete Sequence
1540 bp assembled on 2006-10-11
GenBank Submission: FJ632241
> BO11909.complete
GAAGTTATCAGTCGACATGCTGGCCAGCATCATTTTAAGCGGCTGGCTGC
TTTTGGCTTGGTTATACTTCCTGTGGAGCCGGCGAAGGTATTATAAAGTC
GCATGGCAGTTGCGCGGACCCATTGGCTGGCCACTAATAGGCATGGGCTT
ACAAATGATGAACCCGGAGACGTTTTTGCAGTACATGGATGGTCTGTCGC
GACAGTTTAAAGCGCCTTTCATCTCCTGGATGGGCACCAGTTGTTTCCTC
TACATCAACGATCCGCACAGCGTGGAGCAGATATTGAACTCGACGCACTG
CACCAATAAGGGCGATTTCTATCGGTTCATGAGCTCGGCCATTGGTGACG
GACTGTTTACGTCTAGTTCGCCACGTTGGCACAAACATCGTCGCCTCATT
AATCCCGCCTTTGGTCGCCAGATTCTCAGCAACTTCCTGCCCATTTTCAA
TGCCGAAGCAGAGGTCCTTCTGCAGAAGCTGGAGCTCGAGGGTGTGCAGC
ACGGTAAGCGGCTGGAAATCTACCAAATCCTTAAGAAAATCGTTTTGGAA
GCAGCTTGCCAGACAACGATGGGCAAGAAAATGAACTTCCAGCACGATGG
ATCTTTATGCATATTTAAAGCTTATAATGGCTTGACCGAAGTGTGTGTAA
AACGAATGCTATCGCCGTGGCTCTATCCTGACTTAATATATCGTCGTTCC
GGACTTTTCCGCCTGCAGCAAAAGGTCGTCGGCATACTGTTTGGGTTTAT
AGAACAGCTTCTCGAACCCATAGTCTCGGTAGTGGCCGCCAATTCCAATC
CGGATCAGCAGCGATCCGAAATGGAGATGAGGGGCAAGTCCAAAGCCATT
TTCATTGAGCAGGTGAGGGAGCATGTGGAGCGCGGTCAGCTGAGTTGGCA
GGATGTGAGGGATGAGGCGAATGTGACCATTGCAGCGACTTTCGAGACCA
CATCGACGGCATTGTACTTTACCATCCTCTGCCTGGCAATGCATCCCTGC
TACCAGGAGAAGCTGCACAAGGAACTGGTCACAGAGCTGCCGCCGTCTGG
CGACATAAACTTGGAGCAGCTCCAACGACTCGAGTACACCGAAATGGTGA
TCAACGAGGCCATGCGGCTGTTTGCTCCGGTGCCCATGGTGCTGCGATCA
GCGGATCAGGACATCCAGCTGAAGCGCGGCGACGGGGAGTTCCTTATTCC
GCGTGGCACTCAGATCGGCATCGATATCTACAACATGCAGCGGGATGAAC
GGGTGTGGGGACCACTTTCGCGTACCTACAATCCGGATGCGCATTTCGGA
TTGGATTCGCCTCAGAGGCACGCCTTCGCCTTCGTTCCCTTCACCAAGGG
ATTGCGCATGTGCATAGGCTACCGATATGCCCAAATGCTGATGAAATTGC
TGCTGGCCAGGATCTTTCGCAGCTATCGAATCAGCACGGAGGCCCGCTTG
GAGGAGCTGCTGGTCAAGGGTAATATCTCCCTGAAGCTTAAGGATTACCC
GCTGTGCCGCGTGGAGCGGAGAGCAAGCTTTCTAGACCAT
BO11909.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:37:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp313b1-RB | 1509 | CG9716-PB | 1..1506 | 17..1522 | 7530 | 100 | Plus |
| Cyp313b1-RA | 1509 | CG9716-PA | 1..1506 | 17..1522 | 7530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:37:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp313b1-RB | 2138 | CG9716-RB | 162..1672 | 12..1522 | 7555 | 100 | Plus |
| Cyp313b1-RA | 2060 | CG9716-RA | 84..1594 | 12..1522 | 7555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:37:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8643591..8644176 | 1522..937 | 2930 | 100 | Minus |
| 3R | 32079331 | 3R | 8644772..8645161 | 560..171 | 1950 | 100 | Minus |
| 3R | 32079331 | 3R | 8644226..8644409 | 937..754 | 920 | 100 | Minus |
| 3R | 32079331 | 3R | 8645217..8645375 | 170..12 | 795 | 100 | Minus |
| 3R | 32079331 | 3R | 8644469..8644596 | 757..630 | 640 | 100 | Minus |
| 3R | 32079331 | 3R | 8644648..8644717 | 630..561 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:37:47 has no hits.
BO11909.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:02 Download gff for
BO11909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp313b1-RA | 1..1509 | 17..1526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:57 Download gff for
BO11909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp313b1-RA | 73..1598 | 1..1529 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:37 Download gff for
BO11909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp313b1-RA | 89..1594 | 17..1524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:03 Download gff for
BO11909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp313b1-RA | 73..1598 | 1..1529 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:28 Download gff for
BO11909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp313b1-RA | 89..1594 | 17..1524 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:28 Download gff for
BO11909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8645217..8645370 | 17..170 | 100 | | Minus |
| 3R | 8644469..8644595 | 631..757 | 100 | <- | Minus |
| 3R | 8644648..8644717 | 561..630 | 100 | <- | Minus |
| 3R | 8644772..8645161 | 171..560 | 100 | <- | Minus |
| 3R | 8643589..8644175 | 938..1524 | 99 | <- | Minus |
| 3R | 8644226..8644405 | 758..937 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:37 Download gff for
BO11909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4470370..4470439 | 561..630 | 100 | <- | Minus |
| arm_3R | 4470191..4470317 | 631..757 | 100 | <- | Minus |
| arm_3R | 4470494..4470883 | 171..560 | 100 | <- | Minus |
| arm_3R | 4470939..4471092 | 17..170 | 100 | | Minus |
| arm_3R | 4469311..4469897 | 938..1524 | 99 | <- | Minus |
| arm_3R | 4469948..4470127 | 758..937 | 100 | <- | Minus |
BO11909.pep Sequence
Translation from 16 to 1540
> BO11909.pep
MLASIILSGWLLLAWLYFLWSRRRYYKVAWQLRGPIGWPLIGMGLQMMNP
ETFLQYMDGLSRQFKAPFISWMGTSCFLYINDPHSVEQILNSTHCTNKGD
FYRFMSSAIGDGLFTSSSPRWHKHRRLINPAFGRQILSNFLPIFNAEAEV
LLQKLELEGVQHGKRLEIYQILKKIVLEAACQTTMGKKMNFQHDGSLCIF
KAYNGLTEVCVKRMLSPWLYPDLIYRRSGLFRLQQKVVGILFGFIEQLLE
PIVSVVAANSNPDQQRSEMEMRGKSKAIFIEQVREHVERGQLSWQDVRDE
ANVTIAATFETTSTALYFTILCLAMHPCYQEKLHKELVTELPPSGDINLE
QLQRLEYTEMVINEAMRLFAPVPMVLRSADQDIQLKRGDGEFLIPRGTQI
GIDIYNMQRDERVWGPLSRTYNPDAHFGLDSPQRHAFAFVPFTKGLRMCI
GYRYAQMLMKLLLARIFRSYRISTEARLEELLVKGNISLKLKDYPLCRVE
RRASFLDH
BO11909.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp313b1-PB | 502 | CG9716-PB | 1..502 | 1..502 | 2637 | 100 | Plus |
| Cyp313b1-PA | 502 | CG9716-PA | 1..502 | 1..502 | 2637 | 100 | Plus |
| Cyp313a4-PA | 494 | CG6802-PA | 1..493 | 1..502 | 874 | 35 | Plus |
| Cyp313a1-PA | 492 | CG3360-PA | 13..491 | 13..502 | 674 | 31 | Plus |
| Cyp318a1-PA | 536 | CG1786-PA | 20..521 | 20..493 | 623 | 29.2 | Plus |
