Clone BO11910 Report

Search the DGRC for BO11910

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:119
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptMob3-RA
Protein status:BO11910.pep: validated full length
Sequenced Size:694

Clone Sequence Records

BO11910.3prime Sequence

692 bp (691 high quality bases) assembled on 2006-04-19

> BO11910.3prime
ATGGTCTAGAAAGCTTGCATCCTTATCCTTGCAAATTCGAGATGTCATTT
CTTGTAGGGGTTCCAATTCCTTGGCCGAAATCATGTCAAATTCTTGCACA
AAGTAGTAAAAATGTTTGTAGCAGGCATTCACGTGAGCTTCCGCTCCAAT
GCTCACAATCCGATCGAAATGGTGAATATAGACGTGGACGAAAACACGAA
AAAGACGGGTTAAAATTTTACGACTTATTGCTATGAAGTTCTTGGGAAAT
GGAACATCCGTGGACACTGGAAAAACAGCTTCGTTGTTAATTTGTGTCTC
AATCCAGTCCATTAAATGCTCAATGTACTTTTGGGCTGAAAGGGCGGTTG
GCTTTTTGTATAGATCTCCATCGGCCCATAAGTACTCATATCTGGAACCG
CCAGACATCGTGGGACACGTAGTTTCGTTGCAAAACTCCGAAACGGTGCC
GTAGATCAAGTTTATGCGATTGAAGAAGTCCACAACGTGCACAGCTAGCC
AGTCGTTGAGATTCTCCCCTTGCGGCAAACGCACCACTTGCCGCAGATTA
ATCCCGGATTGCAAACTGGCCTGGGCTTGCTTATGTAAGGAATACCTAAT
GGTTCCGGAGGCAAATGGCTTTTTTGGCCTAAAGGTCTTGCCCTTTTGGA
AGAACTCTAAAAATCCATTTAAAGCCATGTCGACTGATAACT

BO11910.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG4946-PA 663 CG4946-RA 1..660 678..19 3275 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
Mob3-RA 912 CG4946-RA 185..844 678..19 3285 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:34:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10265619..10265771 638..486 765 100 Minus
2L 23513712 2L 10265826..10265950 486..362 625 100 Minus
2L 23513712 2L 10266379..10266502 142..19 620 100 Minus
2L 23513712 2L 10266197..10266314 258..141 590 100 Minus
2L 23513712 2L 10266007..10266110 361..258 520 100 Minus
2L 23513712 2L 10265520..10265561 678..637 195 97.6 Minus
Blast to na_te.dros performed on 2015-02-12 01:34:31 has no hits.

BO11910.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:20:18 Download gff for BO11910.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4946-PA 1..663 16..678 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:49:29 Download gff for BO11910.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4946-PA 1..663 16..678 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:57:43 Download gff for BO11910.3prime
Subject Subject Range Query Range Percent Splice Strand
Mob3-RA 185..850 14..678 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:31:55 Download gff for BO11910.3prime
Subject Subject Range Query Range Percent Splice Strand
Mob3-RA 185..850 14..678 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:31:55 Download gff for BO11910.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10265520..10265561 637..678 97 -> Minus
2L 10265621..10265771 486..636 100 -> Minus
2L 10265827..10265950 362..485 100 -> Minus
2L 10266007..10266110 258..361 100 -> Minus
2L 10266198..10266313 142..257 100 -> Minus
2L 10266380..10266508 14..141 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:57:43 Download gff for BO11910.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10265520..10265561 637..678 97 -> Minus
arm_2L 10265621..10265771 486..636 100 -> Minus
arm_2L 10265827..10265950 362..485 100 -> Minus
arm_2L 10266007..10266110 258..361 100 -> Minus
arm_2L 10266198..10266313 142..257 100 -> Minus
arm_2L 10266380..10266508 14..141 98   Minus

BO11910.5prime Sequence

692 bp (691 high quality bases) assembled on 2006-04-19

> BO11910.5prime
GAAGTTATCAGTCGACATGGCTTTAAATGGATTTTTAGAGTTCTTCCAAA
AGGGCAAGACCTTTAGGCCAAAAAAGCCATTTGCCTCCGGAACCATTAGG
TATTCCTTACATAAGCAAGCCCAGGCCAGTTTGCAATCCGGGATTAATCT
GCGGCAAGTGGTGCGTTTGCCGCAAGGGGAGAATCTCAACGACTGGCTAG
CTGTGCACGTTGTGGACTTCTTCAATCGCATAAACTTGATCTACGGCACC
GTTTCGGAGTTTTGCAACGAAACTACGTGTCCCACGATGTCTGGCGGTTC
CAGATATGAGTACTTATGGGCCGATGGAGATCTATACAAAAAGCCAACCG
CCCTTTCAGCCCAAAAGTACATTGAGCATTTAATGGACTGGATTGAGACA
CAAATTAACAACGAAGCTGTTTTTCCAGTGTCCACGGATGTTCCATTTCC
CAAGAACTTCATAGCAATAAGTCGTAAAATTTTAACCCGTCTTTTTCGTG
TTTTCGTCCACGTCTATATTCACCATTTCGATCGGATTGTGAGCATTGGA
GCGGAAGCTCACGTGAATGCCTGCTACAAACATTTTTACTACTTTGTGCA
AGAATTTGACATGATTTCGGCCAAGGAATTGGAACCCCTACAAGAAATGA
CATCTCGAATTTGCAAGGATAAGGATGCAAGCTTTCTAGACC

BO11910.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG4946-PA 663 CG4946-RA 1..660 17..676 3275 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
Mob3-RA 912 CG4946-RA 185..844 17..676 3285 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:05:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10265619..10265771 57..209 765 100 Plus
2L 23513712 2L 10265826..10265950 209..333 625 100 Plus
2L 23513712 2L 10266379..10266502 553..676 620 100 Plus
2L 23513712 2L 10266197..10266314 437..554 590 100 Plus
2L 23513712 2L 10266007..10266110 334..437 520 100 Plus
2L 23513712 2L 10265520..10265561 17..58 195 97.6 Plus
Blast to na_te.dros performed on 2015-02-12 20:05:17 has no hits.

BO11910.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:20:19 Download gff for BO11910.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4946-PA 1..663 17..679 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:49:31 Download gff for BO11910.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4946-PA 1..663 17..679 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:54:46 Download gff for BO11910.5prime
Subject Subject Range Query Range Percent Splice Strand
Mob3-RA 185..850 17..681 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:40:12 Download gff for BO11910.5prime
Subject Subject Range Query Range Percent Splice Strand
Mob3-RA 185..850 17..681 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:40:12 Download gff for BO11910.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10266380..10266508 554..681 98   Plus
2L 10265520..10265561 17..58 97 -> Plus
2L 10265621..10265771 59..209 100 -> Plus
2L 10265827..10265950 210..333 100 -> Plus
2L 10266007..10266110 334..437 100 -> Plus
2L 10266198..10266313 438..553 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:54:46 Download gff for BO11910.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10265520..10265561 17..58 97 -> Plus
arm_2L 10265621..10265771 59..209 100 -> Plus
arm_2L 10265827..10265950 210..333 100 -> Plus
arm_2L 10266007..10266110 334..437 100 -> Plus
arm_2L 10266198..10266313 438..553 100 -> Plus
arm_2L 10266380..10266508 554..681 98   Plus

BO11910.complete Sequence

694 bp assembled on 2006-10-11

GenBank Submission: FJ632242

> BO11910.complete
GAAGTTATCAGTCGACATGGCTTTAAATGGATTTTTAGAGTTCTTCCAAA
AGGGCAAGACCTTTAGGCCAAAAAAGCCATTTGCCTCCGGAACCATTAGG
TATTCCTTACATAAGCAAGCCCAGGCCAGTTTGCAATCCGGGATTAATCT
GCGGCAAGTGGTGCGTTTGCCGCAAGGGGAGAATCTCAACGACTGGCTAG
CTGTGCACGTTGTGGACTTCTTCAATCGCATAAACTTGATCTACGGCACC
GTTTCGGAGTTTTGCAACGAAACTACGTGTCCCACGATGTCTGGCGGTTC
CAGATATGAGTACTTATGGGCCGATGGAGATCTATACAAAAAGCCAACCG
CCCTTTCAGCCCAAAAGTACATTGAGCATTTAATGGACTGGATTGAGACA
CAAATTAACAACGAAGCTGTTTTTCCAGTGTCCACGGATGTTCCATTTCC
CAAGAACTTCATAGCAATAAGTCGTAAAATTTTAACCCGTCTTTTTCGTG
TTTTCGTCCACGTCTATATTCACCATTTCGATCGGATTGTGAGCATTGGA
GCGGAAGCTCACGTGAATGCCTGCTACAAACATTTTTACTACTTTGTGCA
AGAATTTGACATGATTTCGGCCAAGGAATTGGAACCCCTACAAGAAATGA
CATCTCGAATTTGCAAGGATAAGGATGCAAGCTTTCTAGACCAT

BO11910.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
Mob3-RA 663 CG4946-PA 1..660 17..676 3285 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:34:15
Subject Length Description Subject Range Query Range Score Percent Strand
Mob3-RA 912 CG4946-RA 185..844 17..676 3285 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:34:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10265619..10265771 57..209 765 100 Plus
2L 23513712 2L 10265826..10265950 209..333 625 100 Plus
2L 23513712 2L 10266379..10266502 553..676 620 100 Plus
2L 23513712 2L 10266197..10266314 437..554 590 100 Plus
2L 23513712 2L 10266007..10266110 334..437 520 100 Plus
2L 23513712 2L 10265520..10265561 17..58 195 97.6 Plus
Blast to na_te.dros performed on 2014-11-26 21:34:13 has no hits.

BO11910.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:04 Download gff for BO11910.complete
Subject Subject Range Query Range Percent Splice Strand
Mob3-RA 1..663 17..679 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:59 Download gff for BO11910.complete
Subject Subject Range Query Range Percent Splice Strand
Mob3-RA 183..848 17..681 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:30:26 Download gff for BO11910.complete
Subject Subject Range Query Range Percent Splice Strand
Mob3-RA 185..844 17..678 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:04 Download gff for BO11910.complete
Subject Subject Range Query Range Percent Splice Strand
Mob3-RA 183..848 17..681 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:36:41 Download gff for BO11910.complete
Subject Subject Range Query Range Percent Splice Strand
Mob3-RA 185..844 17..678 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:36:41 Download gff for BO11910.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10266007..10266110 334..437 100 -> Plus
2L 10266198..10266313 438..553 100 -> Plus
2L 10266380..10266502 554..678 98   Plus
2L 10265520..10265561 17..58 97 -> Plus
2L 10265621..10265771 59..209 100 -> Plus
2L 10265827..10265950 210..333 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:30:26 Download gff for BO11910.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10265520..10265561 17..58 97 -> Plus
arm_2L 10265621..10265771 59..209 100 -> Plus
arm_2L 10265827..10265950 210..333 100 -> Plus
arm_2L 10266007..10266110 334..437 100 -> Plus
arm_2L 10266198..10266313 438..553 100 -> Plus
arm_2L 10266380..10266502 554..678 98   Plus

BO11910.pep Sequence

Translation from 16 to 694

> BO11910.pep
MALNGFLEFFQKGKTFRPKKPFASGTIRYSLHKQAQASLQSGINLRQVVR
LPQGENLNDWLAVHVVDFFNRINLIYGTVSEFCNETTCPTMSGGSRYEYL
WADGDLYKKPTALSAQKYIEHLMDWIETQINNEAVFPVSTDVPFPKNFIA
ISRKILTRLFRVFVHVYIHHFDRIVSIGAEAHVNACYKHFYYFVQEFDMI
SAKELEPLQEMTSRICKDKDASFLDH

BO11910.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
Mob3-PA 220 CG4946-PA 1..220 1..220 1170 100 Plus
mats-PC 219 CG13852-PC 3..211 6..215 612 52.9 Plus
mats-PB 219 CG13852-PB 3..211 6..215 612 52.9 Plus
mats-PA 219 CG13852-PA 3..211 6..215 612 52.9 Plus
Mob2-PC 431 CG11711-PC 35..200 44..211 322 35.7 Plus