Clone Sequence Records
BO11910.3prime Sequence
692 bp (691 high quality bases) assembled on 2006-04-19
> BO11910.3prime
ATGGTCTAGAAAGCTTGCATCCTTATCCTTGCAAATTCGAGATGTCATTT
CTTGTAGGGGTTCCAATTCCTTGGCCGAAATCATGTCAAATTCTTGCACA
AAGTAGTAAAAATGTTTGTAGCAGGCATTCACGTGAGCTTCCGCTCCAAT
GCTCACAATCCGATCGAAATGGTGAATATAGACGTGGACGAAAACACGAA
AAAGACGGGTTAAAATTTTACGACTTATTGCTATGAAGTTCTTGGGAAAT
GGAACATCCGTGGACACTGGAAAAACAGCTTCGTTGTTAATTTGTGTCTC
AATCCAGTCCATTAAATGCTCAATGTACTTTTGGGCTGAAAGGGCGGTTG
GCTTTTTGTATAGATCTCCATCGGCCCATAAGTACTCATATCTGGAACCG
CCAGACATCGTGGGACACGTAGTTTCGTTGCAAAACTCCGAAACGGTGCC
GTAGATCAAGTTTATGCGATTGAAGAAGTCCACAACGTGCACAGCTAGCC
AGTCGTTGAGATTCTCCCCTTGCGGCAAACGCACCACTTGCCGCAGATTA
ATCCCGGATTGCAAACTGGCCTGGGCTTGCTTATGTAAGGAATACCTAAT
GGTTCCGGAGGCAAATGGCTTTTTTGGCCTAAAGGTCTTGCCCTTTTGGA
AGAACTCTAAAAATCCATTTAAAGCCATGTCGACTGATAACT
BO11910.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4946-PA | 663 | CG4946-RA | 1..660 | 678..19 | 3275 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:34:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mob3-RA | 912 | CG4946-RA | 185..844 | 678..19 | 3285 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:34:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10265619..10265771 | 638..486 | 765 | 100 | Minus |
2L | 23513712 | 2L | 10265826..10265950 | 486..362 | 625 | 100 | Minus |
2L | 23513712 | 2L | 10266379..10266502 | 142..19 | 620 | 100 | Minus |
2L | 23513712 | 2L | 10266197..10266314 | 258..141 | 590 | 100 | Minus |
2L | 23513712 | 2L | 10266007..10266110 | 361..258 | 520 | 100 | Minus |
2L | 23513712 | 2L | 10265520..10265561 | 678..637 | 195 | 97.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:34:31 has no hits.
BO11910.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:20:18 Download gff for
BO11910.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4946-PA | 1..663 | 16..678 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:49:29 Download gff for
BO11910.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4946-PA | 1..663 | 16..678 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:57:43 Download gff for
BO11910.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mob3-RA | 185..850 | 14..678 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:31:55 Download gff for
BO11910.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mob3-RA | 185..850 | 14..678 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:31:55 Download gff for
BO11910.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10265520..10265561 | 637..678 | 97 | -> | Minus |
2L | 10265621..10265771 | 486..636 | 100 | -> | Minus |
2L | 10265827..10265950 | 362..485 | 100 | -> | Minus |
2L | 10266007..10266110 | 258..361 | 100 | -> | Minus |
2L | 10266198..10266313 | 142..257 | 100 | -> | Minus |
2L | 10266380..10266508 | 14..141 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:57:43 Download gff for
BO11910.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10265520..10265561 | 637..678 | 97 | -> | Minus |
arm_2L | 10265621..10265771 | 486..636 | 100 | -> | Minus |
arm_2L | 10265827..10265950 | 362..485 | 100 | -> | Minus |
arm_2L | 10266007..10266110 | 258..361 | 100 | -> | Minus |
arm_2L | 10266198..10266313 | 142..257 | 100 | -> | Minus |
arm_2L | 10266380..10266508 | 14..141 | 98 | | Minus |
BO11910.5prime Sequence
692 bp (691 high quality bases) assembled on 2006-04-19
> BO11910.5prime
GAAGTTATCAGTCGACATGGCTTTAAATGGATTTTTAGAGTTCTTCCAAA
AGGGCAAGACCTTTAGGCCAAAAAAGCCATTTGCCTCCGGAACCATTAGG
TATTCCTTACATAAGCAAGCCCAGGCCAGTTTGCAATCCGGGATTAATCT
GCGGCAAGTGGTGCGTTTGCCGCAAGGGGAGAATCTCAACGACTGGCTAG
CTGTGCACGTTGTGGACTTCTTCAATCGCATAAACTTGATCTACGGCACC
GTTTCGGAGTTTTGCAACGAAACTACGTGTCCCACGATGTCTGGCGGTTC
CAGATATGAGTACTTATGGGCCGATGGAGATCTATACAAAAAGCCAACCG
CCCTTTCAGCCCAAAAGTACATTGAGCATTTAATGGACTGGATTGAGACA
CAAATTAACAACGAAGCTGTTTTTCCAGTGTCCACGGATGTTCCATTTCC
CAAGAACTTCATAGCAATAAGTCGTAAAATTTTAACCCGTCTTTTTCGTG
TTTTCGTCCACGTCTATATTCACCATTTCGATCGGATTGTGAGCATTGGA
GCGGAAGCTCACGTGAATGCCTGCTACAAACATTTTTACTACTTTGTGCA
AGAATTTGACATGATTTCGGCCAAGGAATTGGAACCCCTACAAGAAATGA
CATCTCGAATTTGCAAGGATAAGGATGCAAGCTTTCTAGACC
BO11910.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4946-PA | 663 | CG4946-RA | 1..660 | 17..676 | 3275 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:05:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mob3-RA | 912 | CG4946-RA | 185..844 | 17..676 | 3285 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:05:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10265619..10265771 | 57..209 | 765 | 100 | Plus |
2L | 23513712 | 2L | 10265826..10265950 | 209..333 | 625 | 100 | Plus |
2L | 23513712 | 2L | 10266379..10266502 | 553..676 | 620 | 100 | Plus |
2L | 23513712 | 2L | 10266197..10266314 | 437..554 | 590 | 100 | Plus |
2L | 23513712 | 2L | 10266007..10266110 | 334..437 | 520 | 100 | Plus |
2L | 23513712 | 2L | 10265520..10265561 | 17..58 | 195 | 97.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:05:17 has no hits.
BO11910.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:20:19 Download gff for
BO11910.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4946-PA | 1..663 | 17..679 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:49:31 Download gff for
BO11910.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4946-PA | 1..663 | 17..679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:54:46 Download gff for
BO11910.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mob3-RA | 185..850 | 17..681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:40:12 Download gff for
BO11910.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mob3-RA | 185..850 | 17..681 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:40:12 Download gff for
BO11910.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10266380..10266508 | 554..681 | 98 | | Plus |
2L | 10265520..10265561 | 17..58 | 97 | -> | Plus |
2L | 10265621..10265771 | 59..209 | 100 | -> | Plus |
2L | 10265827..10265950 | 210..333 | 100 | -> | Plus |
2L | 10266007..10266110 | 334..437 | 100 | -> | Plus |
2L | 10266198..10266313 | 438..553 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:54:46 Download gff for
BO11910.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10265520..10265561 | 17..58 | 97 | -> | Plus |
arm_2L | 10265621..10265771 | 59..209 | 100 | -> | Plus |
arm_2L | 10265827..10265950 | 210..333 | 100 | -> | Plus |
arm_2L | 10266007..10266110 | 334..437 | 100 | -> | Plus |
arm_2L | 10266198..10266313 | 438..553 | 100 | -> | Plus |
arm_2L | 10266380..10266508 | 554..681 | 98 | | Plus |
BO11910.complete Sequence
694 bp assembled on 2006-10-11
GenBank Submission: FJ632242
> BO11910.complete
GAAGTTATCAGTCGACATGGCTTTAAATGGATTTTTAGAGTTCTTCCAAA
AGGGCAAGACCTTTAGGCCAAAAAAGCCATTTGCCTCCGGAACCATTAGG
TATTCCTTACATAAGCAAGCCCAGGCCAGTTTGCAATCCGGGATTAATCT
GCGGCAAGTGGTGCGTTTGCCGCAAGGGGAGAATCTCAACGACTGGCTAG
CTGTGCACGTTGTGGACTTCTTCAATCGCATAAACTTGATCTACGGCACC
GTTTCGGAGTTTTGCAACGAAACTACGTGTCCCACGATGTCTGGCGGTTC
CAGATATGAGTACTTATGGGCCGATGGAGATCTATACAAAAAGCCAACCG
CCCTTTCAGCCCAAAAGTACATTGAGCATTTAATGGACTGGATTGAGACA
CAAATTAACAACGAAGCTGTTTTTCCAGTGTCCACGGATGTTCCATTTCC
CAAGAACTTCATAGCAATAAGTCGTAAAATTTTAACCCGTCTTTTTCGTG
TTTTCGTCCACGTCTATATTCACCATTTCGATCGGATTGTGAGCATTGGA
GCGGAAGCTCACGTGAATGCCTGCTACAAACATTTTTACTACTTTGTGCA
AGAATTTGACATGATTTCGGCCAAGGAATTGGAACCCCTACAAGAAATGA
CATCTCGAATTTGCAAGGATAAGGATGCAAGCTTTCTAGACCAT
BO11910.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:34:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mob3-RA | 663 | CG4946-PA | 1..660 | 17..676 | 3285 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:34:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mob3-RA | 912 | CG4946-RA | 185..844 | 17..676 | 3285 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:34:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10265619..10265771 | 57..209 | 765 | 100 | Plus |
2L | 23513712 | 2L | 10265826..10265950 | 209..333 | 625 | 100 | Plus |
2L | 23513712 | 2L | 10266379..10266502 | 553..676 | 620 | 100 | Plus |
2L | 23513712 | 2L | 10266197..10266314 | 437..554 | 590 | 100 | Plus |
2L | 23513712 | 2L | 10266007..10266110 | 334..437 | 520 | 100 | Plus |
2L | 23513712 | 2L | 10265520..10265561 | 17..58 | 195 | 97.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:34:13 has no hits.
BO11910.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:04 Download gff for
BO11910.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mob3-RA | 1..663 | 17..679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:59 Download gff for
BO11910.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mob3-RA | 183..848 | 17..681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:30:26 Download gff for
BO11910.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mob3-RA | 185..844 | 17..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:04 Download gff for
BO11910.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mob3-RA | 183..848 | 17..681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:36:41 Download gff for
BO11910.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mob3-RA | 185..844 | 17..678 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:36:41 Download gff for
BO11910.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10266007..10266110 | 334..437 | 100 | -> | Plus |
2L | 10266198..10266313 | 438..553 | 100 | -> | Plus |
2L | 10266380..10266502 | 554..678 | 98 | | Plus |
2L | 10265520..10265561 | 17..58 | 97 | -> | Plus |
2L | 10265621..10265771 | 59..209 | 100 | -> | Plus |
2L | 10265827..10265950 | 210..333 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:30:26 Download gff for
BO11910.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10265520..10265561 | 17..58 | 97 | -> | Plus |
arm_2L | 10265621..10265771 | 59..209 | 100 | -> | Plus |
arm_2L | 10265827..10265950 | 210..333 | 100 | -> | Plus |
arm_2L | 10266007..10266110 | 334..437 | 100 | -> | Plus |
arm_2L | 10266198..10266313 | 438..553 | 100 | -> | Plus |
arm_2L | 10266380..10266502 | 554..678 | 98 | | Plus |
BO11910.pep Sequence
Translation from 16 to 694
> BO11910.pep
MALNGFLEFFQKGKTFRPKKPFASGTIRYSLHKQAQASLQSGINLRQVVR
LPQGENLNDWLAVHVVDFFNRINLIYGTVSEFCNETTCPTMSGGSRYEYL
WADGDLYKKPTALSAQKYIEHLMDWIETQINNEAVFPVSTDVPFPKNFIA
ISRKILTRLFRVFVHVYIHHFDRIVSIGAEAHVNACYKHFYYFVQEFDMI
SAKELEPLQEMTSRICKDKDASFLDH
BO11910.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mob3-PA | 220 | CG4946-PA | 1..220 | 1..220 | 1170 | 100 | Plus |
mats-PC | 219 | CG13852-PC | 3..211 | 6..215 | 612 | 52.9 | Plus |
mats-PB | 219 | CG13852-PB | 3..211 | 6..215 | 612 | 52.9 | Plus |
mats-PA | 219 | CG13852-PA | 3..211 | 6..215 | 612 | 52.9 | Plus |
Mob2-PC | 431 | CG11711-PC | 35..200 | 44..211 | 322 | 35.7 | Plus |