Clone Sequence Records
BO11913.5prime Sequence
359 bp (358 high quality bases) assembled on 2006-04-19
> BO11913.5prime
GAAGTTATCAGTCGACATGGGCAGTAAACTGTTTAACAAACTCTTGCTAA
TTGCCGGATTTGCCAGCCTGGCACATGCTGCTTTTTCTGCTGCCCATCAT
CGCACCTATTTGAGGCTGACGGAGCAGGAATGGAATAGCCTTCCATTGGA
CATTATCCTGCAGACCGTCATCAGTTTGGTGATTGTGATTTACAACATCA
TCGAGATCGTTGGCAACTTCAAGGAAATTCGCGCCACCGTGGACATGCAA
CAGAAAACTTGGGACACCTTGGGCAACTTCCCCTCGTTCTATTCCTTCAA
TCACCGTGGTCGTGCCTTAAATCCTGGATATACGCCCCCGGAAGCAAGCT
TTCTAGACC
BO11913.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15168-PA | 330 | CG15168-RA | 1..327 | 17..343 | 1635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:22:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15168-RA | 492 | CG15168-RA | 83..409 | 17..343 | 1635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:22:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18988057..18988248 | 152..343 | 960 | 100 | Plus |
2L | 23513712 | 2L | 18987789..18987870 | 17..98 | 410 | 100 | Plus |
2L | 23513712 | 2L | 18987936..18987988 | 99..151 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:22:06 has no hits.
BO11913.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:20:23 Download gff for
BO11913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15168-PA | 1..330 | 17..347 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:49:37 Download gff for
BO11913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15168-PA | 1..330 | 17..347 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:22:47 Download gff for
BO11913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15168-RA | 74..413 | 8..348 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:17:08 Download gff for
BO11913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15168-RA | 74..413 | 8..348 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:17:08 Download gff for
BO11913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18987780..18987870 | 8..98 | 95 | -> | Plus |
2L | 18987936..18987988 | 99..151 | 100 | -> | Plus |
2L | 18988057..18988252 | 152..348 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:22:47 Download gff for
BO11913.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18987780..18987870 | 8..98 | 95 | -> | Plus |
arm_2L | 18987936..18987988 | 99..151 | 100 | -> | Plus |
arm_2L | 18988057..18988252 | 152..348 | 98 | | Plus |
BO11913.3prime Sequence
359 bp (358 high quality bases) assembled on 2006-04-19
> BO11913.3prime
ATGGTCTAGAAAGCTTGCTTCCGGGGGCGTATATCCAGGATTTAAGGCAC
GACCACGGTGATTGAAGGAATAGAACGAGGGGAAGTTGCCCAAGGTGTCC
CAAGTTTTCTGTTGCATGTCCACGGTGGCGCGAATTTCCTTGAAGTTGCC
AACGATCTCGATGATGTTGTAAATCACAATCACCAAACTGATGACGGTCT
GCAGGATAATGTCCAATGGAAGGCTATTCCATTCCTGCTCCGTCAGCCTC
AAATAGGTGCGATGATGGGCAGCAGAAAAAGCAGCATGTGCCAGGCTGGC
AAATCCGGCAATTAGCAAGAGTTTGTTAAACAGTTTACTGCCCATGTCGA
CTGATAACT
BO11913.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15168-PA | 330 | CG15168-RA | 1..327 | 345..19 | 1635 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:04:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15168-RA | 492 | CG15168-RA | 83..409 | 345..19 | 1635 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:03:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18988057..18988248 | 210..19 | 960 | 100 | Minus |
2L | 23513712 | 2L | 18987789..18987870 | 345..264 | 410 | 100 | Minus |
2L | 23513712 | 2L | 18987936..18987988 | 263..211 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:03:56 has no hits.
BO11913.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:20:22 Download gff for
BO11913.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15168-PA | 1..330 | 15..345 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:49:36 Download gff for
BO11913.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15168-PA | 1..330 | 15..345 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:30:25 Download gff for
BO11913.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15168-RA | 74..413 | 14..354 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:12:58 Download gff for
BO11913.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15168-RA | 74..413 | 14..354 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:12:58 Download gff for
BO11913.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18987780..18987870 | 264..354 | 95 | -> | Minus |
2L | 18987936..18987988 | 211..263 | 100 | -> | Minus |
2L | 18988057..18988252 | 14..210 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:30:25 Download gff for
BO11913.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18987780..18987870 | 264..354 | 95 | -> | Minus |
arm_2L | 18987936..18987988 | 211..263 | 100 | -> | Minus |
arm_2L | 18988057..18988252 | 14..210 | 98 | | Minus |
BO11913.complete Sequence
361 bp assembled on 2006-10-11
GenBank Submission: FJ632243
> BO11913.complete
GAAGTTATCAGTCGACATGGGCAGTAAACTGTTTAACAAACTCTTGCTAA
TTGCCGGATTTGCCAGCCTGGCACATGCTGCTTTTTCTGCTGCCCATCAT
CGCACCTATTTGAGGCTGACGGAGCAGGAATGGAATAGCCTTCCATTGGA
CATTATCCTGCAGACCGTCATCAGTTTGGTGATTGTGATTTACAACATCA
TCGAGATCGTTGGCAACTTCAAGGAAATTCGCGCCACCGTGGACATGCAA
CAGAAAACTTGGGACACCTTGGGCAACTTCCCCTCGTTCTATTCCTTCAA
TCACCGTGGTCGTGCCTTAAATCCTGGATATACGCCCCCGGAAGCAAGCT
TTCTAGACCAT
BO11913.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15168-RA | 330 | CG15168-PA | 1..327 | 17..343 | 1635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15168-RA | 492 | CG15168-RA | 83..409 | 17..343 | 1635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:00:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18988057..18988248 | 152..343 | 960 | 100 | Plus |
2L | 23513712 | 2L | 18987789..18987870 | 17..98 | 410 | 100 | Plus |
2L | 23513712 | 2L | 18987936..18987988 | 99..151 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:00:19 has no hits.
BO11913.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:53 Download gff for
BO11913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15168-RA | 1..330 | 17..347 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:12 Download gff for
BO11913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15168-RA | 54..393 | 8..348 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:37:55 Download gff for
BO11913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15168-RA | 83..409 | 17..345 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:54 Download gff for
BO11913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15168-RA | 54..393 | 8..348 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:47 Download gff for
BO11913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15168-RA | 83..409 | 17..345 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:47 Download gff for
BO11913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18987789..18987870 | 17..98 | 100 | -> | Plus |
2L | 18987936..18987988 | 99..151 | 100 | -> | Plus |
2L | 18988057..18988248 | 152..345 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:37:55 Download gff for
BO11913.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18987789..18987870 | 17..98 | 100 | -> | Plus |
arm_2L | 18987936..18987988 | 99..151 | 100 | -> | Plus |
arm_2L | 18988057..18988248 | 152..345 | 98 | | Plus |
BO11913.pep Sequence
Translation from 16 to 361
> BO11913.pep
MGSKLFNKLLLIAGFASLAHAAFSAAHHRTYLRLTEQEWNSLPLDIILQT
VISLVIVIYNIIEIVGNFKEIRATVDMQQKTWDTLGNFPSFYSFNHRGRA
LNPGYTPPEASFLDH
BO11913.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15168-PA | 109 | CG15168-PA | 1..109 | 1..109 | 566 | 100 | Plus |