Clone BO11913 Report

Search the DGRC for BO11913

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:119
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG15168-RA
Protein status:BO11913.pep: validated full length
Sequenced Size:361

Clone Sequence Records

BO11913.5prime Sequence

359 bp (358 high quality bases) assembled on 2006-04-19

> BO11913.5prime
GAAGTTATCAGTCGACATGGGCAGTAAACTGTTTAACAAACTCTTGCTAA
TTGCCGGATTTGCCAGCCTGGCACATGCTGCTTTTTCTGCTGCCCATCAT
CGCACCTATTTGAGGCTGACGGAGCAGGAATGGAATAGCCTTCCATTGGA
CATTATCCTGCAGACCGTCATCAGTTTGGTGATTGTGATTTACAACATCA
TCGAGATCGTTGGCAACTTCAAGGAAATTCGCGCCACCGTGGACATGCAA
CAGAAAACTTGGGACACCTTGGGCAACTTCCCCTCGTTCTATTCCTTCAA
TCACCGTGGTCGTGCCTTAAATCCTGGATATACGCCCCCGGAAGCAAGCT
TTCTAGACC

BO11913.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG15168-PA 330 CG15168-RA 1..327 17..343 1635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG15168-RA 492 CG15168-RA 83..409 17..343 1635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18988057..18988248 152..343 960 100 Plus
2L 23513712 2L 18987789..18987870 17..98 410 100 Plus
2L 23513712 2L 18987936..18987988 99..151 265 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:22:06 has no hits.

BO11913.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:20:23 Download gff for BO11913.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15168-PA 1..330 17..347 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:49:37 Download gff for BO11913.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15168-PA 1..330 17..347 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:22:47 Download gff for BO11913.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15168-RA 74..413 8..348 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:17:08 Download gff for BO11913.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15168-RA 74..413 8..348 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:17:08 Download gff for BO11913.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18987780..18987870 8..98 95 -> Plus
2L 18987936..18987988 99..151 100 -> Plus
2L 18988057..18988252 152..348 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:22:47 Download gff for BO11913.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18987780..18987870 8..98 95 -> Plus
arm_2L 18987936..18987988 99..151 100 -> Plus
arm_2L 18988057..18988252 152..348 98   Plus

BO11913.3prime Sequence

359 bp (358 high quality bases) assembled on 2006-04-19

> BO11913.3prime
ATGGTCTAGAAAGCTTGCTTCCGGGGGCGTATATCCAGGATTTAAGGCAC
GACCACGGTGATTGAAGGAATAGAACGAGGGGAAGTTGCCCAAGGTGTCC
CAAGTTTTCTGTTGCATGTCCACGGTGGCGCGAATTTCCTTGAAGTTGCC
AACGATCTCGATGATGTTGTAAATCACAATCACCAAACTGATGACGGTCT
GCAGGATAATGTCCAATGGAAGGCTATTCCATTCCTGCTCCGTCAGCCTC
AAATAGGTGCGATGATGGGCAGCAGAAAAAGCAGCATGTGCCAGGCTGGC
AAATCCGGCAATTAGCAAGAGTTTGTTAAACAGTTTACTGCCCATGTCGA
CTGATAACT

BO11913.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG15168-PA 330 CG15168-RA 1..327 345..19 1635 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:04:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG15168-RA 492 CG15168-RA 83..409 345..19 1635 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:03:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18988057..18988248 210..19 960 100 Minus
2L 23513712 2L 18987789..18987870 345..264 410 100 Minus
2L 23513712 2L 18987936..18987988 263..211 265 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:03:56 has no hits.

BO11913.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:20:22 Download gff for BO11913.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15168-PA 1..330 15..345 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:49:36 Download gff for BO11913.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15168-PA 1..330 15..345 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:30:25 Download gff for BO11913.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15168-RA 74..413 14..354 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:12:58 Download gff for BO11913.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15168-RA 74..413 14..354 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:12:58 Download gff for BO11913.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 18987780..18987870 264..354 95 -> Minus
2L 18987936..18987988 211..263 100 -> Minus
2L 18988057..18988252 14..210 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:30:25 Download gff for BO11913.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18987780..18987870 264..354 95 -> Minus
arm_2L 18987936..18987988 211..263 100 -> Minus
arm_2L 18988057..18988252 14..210 98   Minus

BO11913.complete Sequence

361 bp assembled on 2006-10-11

GenBank Submission: FJ632243

> BO11913.complete
GAAGTTATCAGTCGACATGGGCAGTAAACTGTTTAACAAACTCTTGCTAA
TTGCCGGATTTGCCAGCCTGGCACATGCTGCTTTTTCTGCTGCCCATCAT
CGCACCTATTTGAGGCTGACGGAGCAGGAATGGAATAGCCTTCCATTGGA
CATTATCCTGCAGACCGTCATCAGTTTGGTGATTGTGATTTACAACATCA
TCGAGATCGTTGGCAACTTCAAGGAAATTCGCGCCACCGTGGACATGCAA
CAGAAAACTTGGGACACCTTGGGCAACTTCCCCTCGTTCTATTCCTTCAA
TCACCGTGGTCGTGCCTTAAATCCTGGATATACGCCCCCGGAAGCAAGCT
TTCTAGACCAT

BO11913.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG15168-RA 330 CG15168-PA 1..327 17..343 1635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG15168-RA 492 CG15168-RA 83..409 17..343 1635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18988057..18988248 152..343 960 100 Plus
2L 23513712 2L 18987789..18987870 17..98 410 100 Plus
2L 23513712 2L 18987936..18987988 99..151 265 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:00:19 has no hits.

BO11913.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:53 Download gff for BO11913.complete
Subject Subject Range Query Range Percent Splice Strand
CG15168-RA 1..330 17..347 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:12 Download gff for BO11913.complete
Subject Subject Range Query Range Percent Splice Strand
CG15168-RA 54..393 8..348 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:37:55 Download gff for BO11913.complete
Subject Subject Range Query Range Percent Splice Strand
CG15168-RA 83..409 17..345 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:54 Download gff for BO11913.complete
Subject Subject Range Query Range Percent Splice Strand
CG15168-RA 54..393 8..348 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:47 Download gff for BO11913.complete
Subject Subject Range Query Range Percent Splice Strand
CG15168-RA 83..409 17..345 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:47 Download gff for BO11913.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18987789..18987870 17..98 100 -> Plus
2L 18987936..18987988 99..151 100 -> Plus
2L 18988057..18988248 152..345 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:37:55 Download gff for BO11913.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18987789..18987870 17..98 100 -> Plus
arm_2L 18987936..18987988 99..151 100 -> Plus
arm_2L 18988057..18988248 152..345 98   Plus

BO11913.pep Sequence

Translation from 16 to 361

> BO11913.pep
MGSKLFNKLLLIAGFASLAHAAFSAAHHRTYLRLTEQEWNSLPLDIILQT
VISLVIVIYNIIEIVGNFKEIRATVDMQQKTWDTLGNFPSFYSFNHRGRA
LNPGYTPPEASFLDH

BO11913.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG15168-PA 109 CG15168-PA 1..109 1..109 566 100 Plus