Clone Sequence Records
BO11917.3prime Sequence
404 bp (403 high quality bases) assembled on 2006-04-19
> BO11917.3prime
ATGGTCTAGAAAGCTTGCGGCCTCGGTGACAGCCTGTTTAATGTCCTCCA
AATAGCCATCGACCTGGTGCTCCAGTGCGAGAATGTGTCCCGTGTTACAG
TTCTCCGCGCCCACAAAGGTCAGGATGAGCGGCAGCTTGTTCATCTGGAC
CACCTGGTAATTGGAGTACATGGAGATGATGGTCTTGTTTCTGCCCAATC
CCAGTTTGCTGGCCTGATCGCAGGCGGTGGTGAATGTGGGTATGAACGAG
GGCATCAGGGCGAAGTCCACGTTCTTCTCCTGGCTAACCCGCAGGAGGGG
CACTCCGTCGCGATCCGTAATCTGAATAACGTACAGCCCGCTGACCTTTT
GCAGCAGGCCGTCTAAATACTTCTTGATGTCGTCCGACATGTCGACTGAT
AACT
BO11917.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5110-PA | 375 | CG5110-RA | 1..372 | 390..19 | 1860 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:06:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5110-RB | 729 | CG5110-RB | 103..475 | 391..19 | 1865 | 100 | Minus |
| CG5110-RA | 548 | CG5110-RA | 103..475 | 391..19 | 1865 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:06:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17481452..17481783 | 350..19 | 1645 | 99.7 | Minus |
| 2L | 23513712 | 2L | 17481333..17481378 | 391..346 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:06:30 has no hits.
BO11917.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:20:30 Download gff for
BO11917.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5110-PA | 1..375 | 15..390 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:49:47 Download gff for
BO11917.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5110-PA | 1..375 | 15..390 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:30:31 Download gff for
BO11917.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5110-RA | 101..488 | 7..395 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:13:24 Download gff for
BO11917.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5110-RA | 101..488 | 7..395 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:13:24 Download gff for
BO11917.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17481331..17481377 | 347..395 | 95 | -> | Minus |
| 2L | 17481456..17481796 | 7..346 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:30:31 Download gff for
BO11917.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17481331..17481377 | 347..395 | 95 | -> | Minus |
| arm_2L | 17481456..17481796 | 7..346 | 98 | | Minus |
BO11917.5prime Sequence
404 bp (403 high quality bases) assembled on 2006-04-19
> BO11917.5prime
GAAGTTATCAGTCGACATGTCGGACGACATCAAGAAGTATTTAGACGGCC
TGCTGCAAAAGGTCAGCGGGCTGTACGTTATTCAGATTACGGATCGCGAC
GGAGTGCCCCTCCTGCGGGTTAGCCAGGAGAAGAACGTGGACTTCGCCCT
GATGCCCTCGTTCATACCCACATTCACCACCGCCTGCGATCAGGCCAGCA
AACTGGGATTGGGCAGAAACAAGACCATCATCTCCATGTACTCCAATTAC
CAGGTGGTCCAGATGAACAAGCTGCCGCTCATCCTGACCTTTGTGGGCGC
GGAGAACTGTAACACGGGACACATTCTCGCACTGGAGCACCAGGTCGATG
GCTATTTGGAGGACATTAAACAGGCTGTCACCGAGGCCGCAAGCTTTCTA
GACC
BO11917.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5110-PA | 375 | CG5110-RA | 1..372 | 17..388 | 1860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:58:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5110-RB | 729 | CG5110-RB | 103..475 | 16..388 | 1865 | 100 | Plus |
| CG5110-RA | 548 | CG5110-RA | 103..475 | 16..388 | 1865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:58:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17481452..17481783 | 57..388 | 1645 | 99.7 | Plus |
| 2L | 23513712 | 2L | 17481333..17481378 | 16..61 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:58:22 has no hits.
BO11917.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:20:31 Download gff for
BO11917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5110-PA | 1..375 | 17..392 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:49:48 Download gff for
BO11917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5110-PA | 1..375 | 17..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-14 15:00:34 Download gff for
BO11917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5110-RA | 101..488 | 12..400 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:49 Download gff for
BO11917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5110-RA | 101..488 | 12..400 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:49 Download gff for
BO11917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17481331..17481377 | 12..60 | 95 | -> | Plus |
| 2L | 17481456..17481796 | 61..400 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-14 15:00:34 Download gff for
BO11917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17481331..17481377 | 12..60 | 95 | -> | Plus |
| arm_2L | 17481456..17481796 | 61..400 | 98 | | Plus |
BO11917.complete Sequence
406 bp assembled on 2006-10-11
GenBank Submission: FJ632244
> BO11917.complete
GAAGTTATCAGTCGACATGTCGGACGACATCAAGAAGTATTTAGACGGCC
TGCTGCAAAAGGTCAGCGGGCTGTACGTTATTCAGATTACGGATCGCGAC
GGAGTGCCCCTCCTGCGGGTTAGCCAGGAGAAGAACGTGGACTTCGCCCT
GATGCCCTCGTTCATACCCACATTCACCACCGCCTGCGATCAGGCCAGCA
AACTGGGATTGGGCAGAAACAAGACCATCATCTCCATGTACTCCAATTAC
CAGGTGGTCCAGATGAACAAGCTGCCGCTCATCCTGACCTTTGTGGGCGC
GGAGAACTGTAACACGGGACACATTCTCGCACTGGAGCACCAGGTCGATG
GCTATTTGGAGGACATTAAACAGGCTGTCACCGAGGCCGCAAGCTTTCTA
GACCAT
BO11917.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:24:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5110-RB | 375 | CG5110-PB | 1..372 | 17..388 | 1860 | 100 | Plus |
| CG5110-RA | 375 | CG5110-PA | 1..372 | 17..388 | 1860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:24:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5110-RB | 729 | CG5110-RB | 103..475 | 16..388 | 1865 | 100 | Plus |
| CG5110-RA | 548 | CG5110-RA | 103..475 | 16..388 | 1865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:24:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17481452..17481783 | 57..388 | 1645 | 99.7 | Plus |
| 2L | 23513712 | 2L | 17481333..17481378 | 16..61 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:24:45 has no hits.
BO11917.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:57 Download gff for
BO11917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5110-RA | 1..375 | 17..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:25:52 Download gff for
BO11917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5110-RA | 86..473 | 12..400 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:30 Download gff for
BO11917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5110-RA | 104..475 | 17..390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:57 Download gff for
BO11917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5110-RA | 86..473 | 12..400 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:05 Download gff for
BO11917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5110-RA | 104..475 | 17..390 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:05 Download gff for
BO11917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17481334..17481377 | 17..60 | 100 | -> | Plus |
| 2L | 17481456..17481783 | 61..390 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:30 Download gff for
BO11917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17481334..17481377 | 17..60 | 100 | -> | Plus |
| arm_2L | 17481456..17481783 | 61..390 | 99 | | Plus |
BO11917.pep Sequence
Translation from 16 to 406
> BO11917.pep
MSDDIKKYLDGLLQKVSGLYVIQITDRDGVPLLRVSQEKNVDFALMPSFI
PTFTTACDQASKLGLGRNKTIISMYSNYQVVQMNKLPLILTFVGAENCNT
GHILALEHQVDGYLEDIKQAVTEAASFLDH
BO11917.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:46:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5110-PB | 124 | CG5110-PB | 1..124 | 1..124 | 631 | 100 | Plus |
| CG5110-PA | 124 | CG5110-PA | 1..124 | 1..124 | 631 | 100 | Plus |
