Clone Sequence Records
BO11918.3prime Sequence
822 bp (729 high quality bases) assembled on 2006-04-19
> BO11918.3prime
ATGGTCTAGAAAGCTTGCGCAGCTTCCCAGGACGCAGGAGGATAGCTCCG
GTCGGTAGTAAGTCCCATTGGGGCAGTCCATGTGCCGCAGGGTGCCATTT
AGAGCCGAGCAGTAGTAGTACTTCCGGCAGTCGTTTCCATCGGCCATCAA
GCCCACGTGCTGACAGGTGTTGGGCAGCACCGAAAAGTCGTCGTCGTTGG
GATCCTCGATGATCACCGAAGGATCATCGGTGCTGGGCGGCAGGACATTC
GATCCGCTGCGGCAGACGTAGTCCACGAAGGTCTCGCCATCGTTGCACCT
GTGCAGCGAGGGGTAGATGACGATGGTGTCGTTCAGGTTCTGGTTAACCG
TCGACTTGCACACGTAGAAGATATTGGGATTGGTGGGCCAGGCGGCCACG
TGTCCGGCATTGGGGCAGTAGTACTGTCGCTGCAGGCAGACGGAGTCAGT
CAGGGTCAAAGTGCACTGGCCAGTCGTCGCATCGAAGGCCTTGTCGTTGC
CGCAATCAACGGCAGCAGCCACCAGAGTGGCCCCCACGAAGTAGCACATG
TGGTACTTCTGGCAGTCGTACGGATCTGGAAAGATGCCTTGCGAGGTGCA
CTGAAAGTTGCCCTCGATGCCGAACGGATGACACGGGCCCGTCTCGTTGG
TGCAGCTCCCCAGCCGGGCGTTGCAGTAGTATCCATTAGCCACGTCGCAC
GATTCCACGGGAATGTTCACCCATCCGTTGGAGTGACGCACGCAGGTGGC
CAGCAGCTCGCAGGACTCGCAGATGGGCCCGGGACTCTGACGGCCCTCGC
AGGAGTTTGTCTCCCGCGGCTG
BO11918.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13806-PA | 894 | CG13806-RA | 88..891 | 822..19 | 4020 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:52:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13806-RA | 1175 | CG13806-RA | 196..999 | 822..19 | 4020 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:52:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2266661..2267464 | 822..19 | 4020 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:52:16 has no hits.
BO11918.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:20:32 Download gff for
BO11918.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13806-PA | 88..894 | 16..822 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:49:50 Download gff for
BO11918.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13806-PA | 88..894 | 16..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:29:21 Download gff for
BO11918.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13806-RA | 196..999 | 19..822 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:19:02 Download gff for
BO11918.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13806-RA | 196..999 | 19..822 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:19:02 Download gff for
BO11918.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2266661..2267464 | 19..822 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:29:21 Download gff for
BO11918.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2266661..2267464 | 19..822 | 100 | | Minus |
BO11918.5prime Sequence
788 bp (786 high quality bases) assembled on 2006-04-19
> BO11918.5prime
GAAGTTATCAGTCGACATGTTCTTGGAAAGAATACTAGTGAGCGTGTTAC
TGCTCAACCTGGTGGCTCTGCTTATGGGAGCCACTGTTACCACCCGGCGC
ATCCAGCCGCGGGAGACAAACTCCTGCGAGGGCCGTCAGAGTCCCGGGCC
CATCTGCGAGTCCTGCGAGCTGCTGGCCACCTGCGTGCGTCACTCCAACG
GATGGGTGAACATTCCCGTGGAATCGTGCGACGTGGCTAATGGATACTAC
TGCAACGCCCGGCTGGGGAGCTGCACCAACGAGACGGGCCCGTGTCATCC
GTTCGGCATCGAGGGCAACTTTCAGTGCACCTCGCAAGGCATCTTTCCAG
ATCCGTACGACTGCCAGAAGTACCACATGTGCTACTTCGTGGGGGCCACT
CTGGTGGCTGCTGCCGTTGATTGCGGCAACGACAAGGCCTTCGATGCGAC
GACTGGCCAGTGCACTTTGACCCTGACTGACTCCGTCTGCCTGCAGCGAC
AGTACTACTGCCCCAATGCCGGACACGTGGCCGCCTGGCCCACCAATCCC
AATATCTTCTACGTGTGCAAGTCGACGGTTAACCAGAACCTGAACGACAC
CATCGTCATCTACCCCTCGCTGCACAGGTGCAACGATGGCGAGACCTTCG
TGGACTACGTCTGCCGCAGCGGATCGAATGTCCTGCCGCCCAGCACCGAT
GATCCTTCGGTGATCATCGAGGATCCCAACGACGACGACTTTTCGGTGCT
GCCCAACACCTGTCAGCACGTGGGCTTGATGGCCGATG
BO11918.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13806-PA | 894 | CG13806-RA | 1..772 | 17..788 | 3860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:12:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13806-RA | 1175 | CG13806-RA | 104..880 | 12..788 | 3870 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:11:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2266603..2267345 | 46..788 | 3715 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:11:58 has no hits.
BO11918.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:20:33 Download gff for
BO11918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13806-PA | 1..772 | 17..788 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:49:51 Download gff for
BO11918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13806-PA | 1..772 | 17..788 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:51:39 Download gff for
BO11918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13806-RA | 96..880 | 1..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:56:39 Download gff for
BO11918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13806-RA | 96..880 | 1..788 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:56:39 Download gff for
BO11918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2266604..2267345 | 47..788 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:51:39 Download gff for
BO11918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2266604..2267345 | 47..788 | 100 | | Plus |
BO11918.complete Sequence
925 bp assembled on 2006-10-11
GenBank Submission: FJ632245
> BO11918.complete
GAAGTTATCAGTCGACATGTTCTTGGAAAGAATACTAGTGAGCGTGTTAC
TGCTCAACCTGGTGGCTCTGCTTATGGGAGCCACTGTTACCACCCGGCGC
ATCCAGCCGCGGGAGACAAACTCCTGCGAGGGCCGTCAGAGTCCCGGGCC
CATCTGCGAGTCCTGCGAGCTGCTGGCCACCTGCGTGCGTCACTCCAACG
GATGGGTGAACATTCCCGTGGAATCGTGCGACGTGGCTAATGGATACTAC
TGCAACGCCCGGCTGGGGAGCTGCACCAACGAGACGGGCCCGTGTCATCC
GTTCGGCATCGAGGGCAACTTTCAGTGCACCTCGCAAGGCATCTTTCCAG
ATCCGTACGACTGCCAGAAGTACCACATGTGCTACTTCGTGGGGGCCACT
CTGGTGGCTGCTGCCGTTGATTGCGGCAACGACAAGGCCTTCGATGCGAC
GACTGGCCAGTGCACTTTGACCCTGACTGACTCCGTCTGCCTGCAGCGAC
AGTACTACTGCCCCAATGCCGGACACGTGGCCGCCTGGCCCACCAATCCC
AATATCTTCTACGTGTGCAAGTCGACGGTTAACCAGAACCTGAACGACAC
CATCGTCATCTACCCCTCGCTGCACAGGTGCAACGATGGCGAGACCTTCG
TGGACTACGTCTGCCGCAGCGGATCGAATGTCCTGCCGCCCAGCACCGAT
GATCCTTCGGTGATCATCGAGGATCCCAACGACGACGACTTTTCGGTGCT
GCCCAACACCTGTCAGCACGTGGGCTTGATGGCCGATGGAAACGACTGCC
GGAAGTACTACTACTGCTCGGCTCTAAATGGCACCCTGCGGCACATGGAC
TGCCCCAATGGGACTTACTACCGACCGGAGCTATCCTCCTGCGTCCTGGG
AAGCTGCGCAAGCTTTCTAGACCAT
BO11918.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:05:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13806-RA | 894 | CG13806-PA | 1..891 | 17..907 | 4455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13806-RA | 1175 | CG13806-RA | 104..999 | 12..907 | 4465 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2266603..2267464 | 46..907 | 4310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:05:56 has no hits.
BO11918.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:05 Download gff for
BO11918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13806-RA | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:02 Download gff for
BO11918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13806-RA | 96..999 | 1..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:32 Download gff for
BO11918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13806-RA | 114..999 | 22..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:05 Download gff for
BO11918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13806-RA | 96..999 | 1..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:14 Download gff for
BO11918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13806-RA | 114..999 | 22..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:14 Download gff for
BO11918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2266507..2266531 | 22..46 | 100 | -> | Plus |
| 3L | 2266604..2267464 | 47..909 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:32 Download gff for
BO11918.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2266507..2266531 | 22..46 | 100 | -> | Plus |
| arm_3L | 2266604..2267464 | 47..909 | 99 | | Plus |
BO11918.pep Sequence
Translation from 16 to 925
> BO11918.pep
MFLERILVSVLLLNLVALLMGATVTTRRIQPRETNSCEGRQSPGPICESC
ELLATCVRHSNGWVNIPVESCDVANGYYCNARLGSCTNETGPCHPFGIEG
NFQCTSQGIFPDPYDCQKYHMCYFVGATLVAAAVDCGNDKAFDATTGQCT
LTLTDSVCLQRQYYCPNAGHVAAWPTNPNIFYVCKSTVNQNLNDTIVIYP
SLHRCNDGETFVDYVCRSGSNVLPPSTDDPSVIIEDPNDDDFSVLPNTCQ
HVGLMADGNDCRKYYYCSALNGTLRHMDCPNGTYYRPELSSCVLGSCASF
LDH
BO11918.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13806-PA | 297 | CG13806-PA | 1..297 | 1..297 | 1659 | 100 | Plus |
| CG32302-PA | 313 | CG32302-PA | 24..268 | 35..300 | 302 | 28.4 | Plus |
