Clone BO11919 Report

Search the DGRC for BO11919

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:119
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptEaf6-RA
Protein status:BO11919.pep: validated full length
Sequenced Size:709

Clone Sequence Records

BO11919.3prime Sequence

707 bp (706 high quality bases) assembled on 2006-04-19

> BO11919.3prime
ATGGTCTAGAAAGCTTGCTCGATGTCGAATCTTCTTGTTTATGTGACCGC
TTTTCTTCGCTGTCGCACTGGAGTTCGTGGATAGTTTGCTCTTTGTATTC
GAAGTGGGTGTGCCGAGGAGATCCTTGTTCCCTCCACTGTTCGTAGATCC
AGACACCATTCCGCTCACTACGCTGCCCTCATTGCGATGCGAGGGTGAAT
CCTTTTCGTCTTTCGGTGTGCTCTTGATTGTCGTGGTTCCGTCGTGGGCC
GTTGTGGTGTTCTGATTGATTGAGATCTGATTGTCGCTGGAGTCTTCATT
TGTGATGGAATCCGATTCGCTGGCGCGCTCAGGATTGCATATAGCCATGG
AGGTGATGCTGGACTTGGAGAACAGGCGCTCGGCCTCCTTGAACTTGCGA
TTCCGCTTGTCGGCCTTGGAGTTGGTGGCCTTGTTGGAGGTCAGATAGCG
CTCCCAGCCTCGGATGATGTTTCCGCACAACTGCGTGTCCTCTAGGTAGG
AGCCCTCGAAGGCGTAGATCTGTCGCTCCAGATTGGCCAGTTGTTCCGAT
GTTTCGGCCTTCTTCTTGATGAGGTCCGCCAACTCGGCGCGAGTGTCCAT
GGAGCCGCCTTTCGTATTCGAGCTCGTTTTGGCCGACTTCTTTGGCTTGT
TCCCGTTCGTTTCGCTGACATTTTTACTCGTTGGCGAGCTCATGTCGACT
GATAACT

BO11919.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG12756-PA 678 Eaf6-RA 1..675 693..19 3375 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:24:21
Subject Length Description Subject Range Query Range Score Percent Strand
Eaf6-RA 864 CG12756-RA 68..742 693..19 3375 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:24:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5607806..5608020 333..547 1075 100 Plus
3L 28110227 3L 5607284..5607466 19..201 915 100 Plus
3L 28110227 3L 5608086..5608233 546..693 740 100 Plus
3L 28110227 3L 5607552..5607683 201..332 660 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:24:17 has no hits.

BO11919.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:20:34 Download gff for BO11919.3prime
Subject Subject Range Query Range Percent Splice Strand
Eaf6-PA 1..678 16..693 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:49:52 Download gff for BO11919.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12756-PA 1..678 16..693 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 12:55:02 Download gff for BO11919.3prime
Subject Subject Range Query Range Percent Splice Strand
Eaf6-RA 68..750 12..693 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:00:41 Download gff for BO11919.3prime
Subject Subject Range Query Range Percent Splice Strand
Eaf6-RA 68..750 12..693 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:00:41 Download gff for BO11919.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5607276..5607465 12..200 97 <- Plus
3L 5607552..5607683 201..332 100 <- Plus
3L 5607806..5608019 333..546 100 <- Plus
3L 5608087..5608233 547..693 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 12:55:02 Download gff for BO11919.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5600376..5600565 12..200 97 <- Plus
arm_3L 5600652..5600783 201..332 100 <- Plus
arm_3L 5600906..5601119 333..546 100 <- Plus
arm_3L 5601187..5601333 547..693 100   Plus

BO11919.5prime Sequence

707 bp (706 high quality bases) assembled on 2006-04-19

> BO11919.5prime
GAAGTTATCAGTCGACATGAGCTCGCCAACGAGTAAAAATGTCAGCGAAA
CGAACGGGAACAAGCCAAAGAAGTCGGCCAAAACGAGCTCGAATACGAAA
GGCGGCTCCATGGACACTCGCGCCGAGTTGGCGGACCTCATCAAGAAGAA
GGCCGAAACATCGGAACAACTGGCCAATCTGGAGCGACAGATCTACGCCT
TCGAGGGCTCCTACCTAGAGGACACGCAGTTGTGCGGAAACATCATCCGA
GGCTGGGAGCGCTATCTGACCTCCAACAAGGCCACCAACTCCAAGGCCGA
CAAGCGGAATCGCAAGTTCAAGGAGGCCGAGCGCCTGTTCTCCAAGTCCA
GCATCACCTCCATGGCTATATGCAATCCTGAGCGCGCCAGCGAATCGGAT
TCCATCACAAATGAAGACTCCAGCGACAATCAGATCTCAATCAATCAGAA
CACCACAACGGCCCACGACGGAACCACGACAATCAAGAGCACACCGAAAG
ACGAAAAGGATTCACCCTCGCATCGCAATGAGGGCAGCGTAGTGAGCGGA
ATGGTGTCTGGATCTACGAACAGTGGAGGGAACAAGGATCTCCTCGGCAC
ACCCACTTCGAATACAAAGAGCAAACTATCCACGAACTCCAGTGCGACAG
CGAAGAAAAGCGGTCACATAAACAAGAAGATTCGACATCGAGCAAGCTTT
CTAGACC

BO11919.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG12756-PA 678 Eaf6-RA 1..675 17..691 3375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:52:30
Subject Length Description Subject Range Query Range Score Percent Strand
Eaf6-RA 864 CG12756-RA 68..742 17..691 3375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5607806..5608020 377..163 1075 100 Minus
3L 28110227 3L 5607284..5607466 691..509 915 100 Minus
3L 28110227 3L 5608086..5608233 164..17 740 100 Minus
3L 28110227 3L 5607552..5607683 509..378 660 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:52:27 has no hits.

BO11919.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:20:35 Download gff for BO11919.5prime
Subject Subject Range Query Range Percent Splice Strand
Eaf6-PA 1..678 17..694 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:49:54 Download gff for BO11919.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12756-PA 1..678 17..694 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:15:00 Download gff for BO11919.5prime
Subject Subject Range Query Range Percent Splice Strand
Eaf6-RA 68..750 17..698 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:22:28 Download gff for BO11919.5prime
Subject Subject Range Query Range Percent Splice Strand
Eaf6-RA 68..750 17..698 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:22:28 Download gff for BO11919.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5607806..5608019 164..377 100 <- Minus
3L 5608087..5608233 17..163 100   Minus
3L 5607276..5607465 510..698 97 <- Minus
3L 5607552..5607683 378..509 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:15:00 Download gff for BO11919.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5600906..5601119 164..377 100 <- Minus
arm_3L 5601187..5601333 17..163 100   Minus
arm_3L 5600652..5600783 378..509 100 <- Minus
arm_3L 5600376..5600565 510..698 97 <- Minus

BO11919.complete Sequence

709 bp assembled on 2006-10-11

GenBank Submission: FJ632246

> BO11919.complete
GAAGTTATCAGTCGACATGAGCTCGCCAACGAGTAAAAATGTCAGCGAAA
CGAACGGGAACAAGCCAAAGAAGTCGGCCAAAACGAGCTCGAATACGAAA
GGCGGCTCCATGGACACTCGCGCCGAGTTGGCGGACCTCATCAAGAAGAA
GGCCGAAACATCGGAACAACTGGCCAATCTGGAGCGACAGATCTACGCCT
TCGAGGGCTCCTACCTAGAGGACACGCAGTTGTGCGGAAACATCATCCGA
GGCTGGGAGCGCTATCTGACCTCCAACAAGGCCACCAACTCCAAGGCCGA
CAAGCGGAATCGCAAGTTCAAGGAGGCCGAGCGCCTGTTCTCCAAGTCCA
GCATCACCTCCATGGCTATATGCAATCCTGAGCGCGCCAGCGAATCGGAT
TCCATCACAAATGAAGACTCCAGCGACAATCAGATCTCAATCAATCAGAA
CACCACAACGGCCCACGACGGAACCACGACAATCAAGAGCACACCGAAAG
ACGAAAAGGATTCACCCTCGCATCGCAATGAGGGCAGCGTAGTGAGCGGA
ATGGTGTCTGGATCTACGAACAGTGGAGGGAACAAGGATCTCCTCGGCAC
ACCCACTTCGAATACAAAGAGCAAACTATCCACGAACTCCAGTGCGACAG
CGAAGAAAAGCGGTCACATAAACAAGAAGATTCGACATCGAGCAAGCTTT
CTAGACCAT

BO11919.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:58:45
Subject Length Description Subject Range Query Range Score Percent Strand
Eaf6-RA 678 CG12756-PA 1..675 17..691 3375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:58:46
Subject Length Description Subject Range Query Range Score Percent Strand
Eaf6-RA 864 CG12756-RA 68..742 17..691 3375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:58:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5607806..5608020 377..163 1075 100 Minus
3L 28110227 3L 5607284..5607466 691..509 915 100 Minus
3L 28110227 3L 5608086..5608233 164..17 740 100 Minus
3L 28110227 3L 5607552..5607683 509..378 660 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:58:44 has no hits.

BO11919.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:06 Download gff for BO11919.complete
Subject Subject Range Query Range Percent Splice Strand
Eaf6-RA 1..678 17..694 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:03 Download gff for BO11919.complete
Subject Subject Range Query Range Percent Splice Strand
Eaf6-RA 8..690 17..698 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:31 Download gff for BO11919.complete
Subject Subject Range Query Range Percent Splice Strand
Eaf6-RA 68..742 17..693 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:06 Download gff for BO11919.complete
Subject Subject Range Query Range Percent Splice Strand
Eaf6-RA 8..690 17..698 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:35 Download gff for BO11919.complete
Subject Subject Range Query Range Percent Splice Strand
Eaf6-RA 68..742 17..693 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:35 Download gff for BO11919.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5607281..5607465 510..693 98 <- Minus
3L 5607552..5607683 378..509 100 <- Minus
3L 5607806..5608019 164..377 100 <- Minus
3L 5608087..5608233 17..163 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:31 Download gff for BO11919.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5600381..5600565 510..693 98 <- Minus
arm_3L 5600652..5600783 378..509 100 <- Minus
arm_3L 5600906..5601119 164..377 100 <- Minus
arm_3L 5601187..5601333 17..163 100   Minus

BO11919.pep Sequence

Translation from 16 to 709

> BO11919.pep
MSSPTSKNVSETNGNKPKKSAKTSSNTKGGSMDTRAELADLIKKKAETSE
QLANLERQIYAFEGSYLEDTQLCGNIIRGWERYLTSNKATNSKADKRNRK
FKEAERLFSKSSITSMAICNPERASESDSITNEDSSDNQISINQNTTTAH
DGTTTIKSTPKDEKDSPSHRNEGSVVSGMVSGSTNSGGNKDLLGTPTSNT
KSKLSTNSSATAKKSGHINKKIRHRASFLDH

BO11919.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:27
Subject Length Description Subject Range Query Range Score Percent Strand
Eaf6-PA 225 CG12756-PA 1..225 1..225 1140 100 Plus