Clone Sequence Records
BO11919.3prime Sequence
707 bp (706 high quality bases) assembled on 2006-04-19
> BO11919.3prime
ATGGTCTAGAAAGCTTGCTCGATGTCGAATCTTCTTGTTTATGTGACCGC
TTTTCTTCGCTGTCGCACTGGAGTTCGTGGATAGTTTGCTCTTTGTATTC
GAAGTGGGTGTGCCGAGGAGATCCTTGTTCCCTCCACTGTTCGTAGATCC
AGACACCATTCCGCTCACTACGCTGCCCTCATTGCGATGCGAGGGTGAAT
CCTTTTCGTCTTTCGGTGTGCTCTTGATTGTCGTGGTTCCGTCGTGGGCC
GTTGTGGTGTTCTGATTGATTGAGATCTGATTGTCGCTGGAGTCTTCATT
TGTGATGGAATCCGATTCGCTGGCGCGCTCAGGATTGCATATAGCCATGG
AGGTGATGCTGGACTTGGAGAACAGGCGCTCGGCCTCCTTGAACTTGCGA
TTCCGCTTGTCGGCCTTGGAGTTGGTGGCCTTGTTGGAGGTCAGATAGCG
CTCCCAGCCTCGGATGATGTTTCCGCACAACTGCGTGTCCTCTAGGTAGG
AGCCCTCGAAGGCGTAGATCTGTCGCTCCAGATTGGCCAGTTGTTCCGAT
GTTTCGGCCTTCTTCTTGATGAGGTCCGCCAACTCGGCGCGAGTGTCCAT
GGAGCCGCCTTTCGTATTCGAGCTCGTTTTGGCCGACTTCTTTGGCTTGT
TCCCGTTCGTTTCGCTGACATTTTTACTCGTTGGCGAGCTCATGTCGACT
GATAACT
BO11919.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12756-PA | 678 | Eaf6-RA | 1..675 | 693..19 | 3375 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:24:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eaf6-RA | 864 | CG12756-RA | 68..742 | 693..19 | 3375 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:24:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5607806..5608020 | 333..547 | 1075 | 100 | Plus |
3L | 28110227 | 3L | 5607284..5607466 | 19..201 | 915 | 100 | Plus |
3L | 28110227 | 3L | 5608086..5608233 | 546..693 | 740 | 100 | Plus |
3L | 28110227 | 3L | 5607552..5607683 | 201..332 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:24:17 has no hits.
BO11919.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:20:34 Download gff for
BO11919.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eaf6-PA | 1..678 | 16..693 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:49:52 Download gff for
BO11919.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12756-PA | 1..678 | 16..693 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 12:55:02 Download gff for
BO11919.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eaf6-RA | 68..750 | 12..693 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:00:41 Download gff for
BO11919.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eaf6-RA | 68..750 | 12..693 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:00:41 Download gff for
BO11919.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5607276..5607465 | 12..200 | 97 | <- | Plus |
3L | 5607552..5607683 | 201..332 | 100 | <- | Plus |
3L | 5607806..5608019 | 333..546 | 100 | <- | Plus |
3L | 5608087..5608233 | 547..693 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 12:55:02 Download gff for
BO11919.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5600376..5600565 | 12..200 | 97 | <- | Plus |
arm_3L | 5600652..5600783 | 201..332 | 100 | <- | Plus |
arm_3L | 5600906..5601119 | 333..546 | 100 | <- | Plus |
arm_3L | 5601187..5601333 | 547..693 | 100 | | Plus |
BO11919.5prime Sequence
707 bp (706 high quality bases) assembled on 2006-04-19
> BO11919.5prime
GAAGTTATCAGTCGACATGAGCTCGCCAACGAGTAAAAATGTCAGCGAAA
CGAACGGGAACAAGCCAAAGAAGTCGGCCAAAACGAGCTCGAATACGAAA
GGCGGCTCCATGGACACTCGCGCCGAGTTGGCGGACCTCATCAAGAAGAA
GGCCGAAACATCGGAACAACTGGCCAATCTGGAGCGACAGATCTACGCCT
TCGAGGGCTCCTACCTAGAGGACACGCAGTTGTGCGGAAACATCATCCGA
GGCTGGGAGCGCTATCTGACCTCCAACAAGGCCACCAACTCCAAGGCCGA
CAAGCGGAATCGCAAGTTCAAGGAGGCCGAGCGCCTGTTCTCCAAGTCCA
GCATCACCTCCATGGCTATATGCAATCCTGAGCGCGCCAGCGAATCGGAT
TCCATCACAAATGAAGACTCCAGCGACAATCAGATCTCAATCAATCAGAA
CACCACAACGGCCCACGACGGAACCACGACAATCAAGAGCACACCGAAAG
ACGAAAAGGATTCACCCTCGCATCGCAATGAGGGCAGCGTAGTGAGCGGA
ATGGTGTCTGGATCTACGAACAGTGGAGGGAACAAGGATCTCCTCGGCAC
ACCCACTTCGAATACAAAGAGCAAACTATCCACGAACTCCAGTGCGACAG
CGAAGAAAAGCGGTCACATAAACAAGAAGATTCGACATCGAGCAAGCTTT
CTAGACC
BO11919.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12756-PA | 678 | Eaf6-RA | 1..675 | 17..691 | 3375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:52:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eaf6-RA | 864 | CG12756-RA | 68..742 | 17..691 | 3375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:52:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5607806..5608020 | 377..163 | 1075 | 100 | Minus |
3L | 28110227 | 3L | 5607284..5607466 | 691..509 | 915 | 100 | Minus |
3L | 28110227 | 3L | 5608086..5608233 | 164..17 | 740 | 100 | Minus |
3L | 28110227 | 3L | 5607552..5607683 | 509..378 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:52:27 has no hits.
BO11919.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:20:35 Download gff for
BO11919.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eaf6-PA | 1..678 | 17..694 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:49:54 Download gff for
BO11919.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12756-PA | 1..678 | 17..694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:15:00 Download gff for
BO11919.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eaf6-RA | 68..750 | 17..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:22:28 Download gff for
BO11919.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eaf6-RA | 68..750 | 17..698 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:22:28 Download gff for
BO11919.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5607806..5608019 | 164..377 | 100 | <- | Minus |
3L | 5608087..5608233 | 17..163 | 100 | | Minus |
3L | 5607276..5607465 | 510..698 | 97 | <- | Minus |
3L | 5607552..5607683 | 378..509 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:15:00 Download gff for
BO11919.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5600906..5601119 | 164..377 | 100 | <- | Minus |
arm_3L | 5601187..5601333 | 17..163 | 100 | | Minus |
arm_3L | 5600652..5600783 | 378..509 | 100 | <- | Minus |
arm_3L | 5600376..5600565 | 510..698 | 97 | <- | Minus |
BO11919.complete Sequence
709 bp assembled on 2006-10-11
GenBank Submission: FJ632246
> BO11919.complete
GAAGTTATCAGTCGACATGAGCTCGCCAACGAGTAAAAATGTCAGCGAAA
CGAACGGGAACAAGCCAAAGAAGTCGGCCAAAACGAGCTCGAATACGAAA
GGCGGCTCCATGGACACTCGCGCCGAGTTGGCGGACCTCATCAAGAAGAA
GGCCGAAACATCGGAACAACTGGCCAATCTGGAGCGACAGATCTACGCCT
TCGAGGGCTCCTACCTAGAGGACACGCAGTTGTGCGGAAACATCATCCGA
GGCTGGGAGCGCTATCTGACCTCCAACAAGGCCACCAACTCCAAGGCCGA
CAAGCGGAATCGCAAGTTCAAGGAGGCCGAGCGCCTGTTCTCCAAGTCCA
GCATCACCTCCATGGCTATATGCAATCCTGAGCGCGCCAGCGAATCGGAT
TCCATCACAAATGAAGACTCCAGCGACAATCAGATCTCAATCAATCAGAA
CACCACAACGGCCCACGACGGAACCACGACAATCAAGAGCACACCGAAAG
ACGAAAAGGATTCACCCTCGCATCGCAATGAGGGCAGCGTAGTGAGCGGA
ATGGTGTCTGGATCTACGAACAGTGGAGGGAACAAGGATCTCCTCGGCAC
ACCCACTTCGAATACAAAGAGCAAACTATCCACGAACTCCAGTGCGACAG
CGAAGAAAAGCGGTCACATAAACAAGAAGATTCGACATCGAGCAAGCTTT
CTAGACCAT
BO11919.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:58:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eaf6-RA | 678 | CG12756-PA | 1..675 | 17..691 | 3375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:58:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eaf6-RA | 864 | CG12756-RA | 68..742 | 17..691 | 3375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:58:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5607806..5608020 | 377..163 | 1075 | 100 | Minus |
3L | 28110227 | 3L | 5607284..5607466 | 691..509 | 915 | 100 | Minus |
3L | 28110227 | 3L | 5608086..5608233 | 164..17 | 740 | 100 | Minus |
3L | 28110227 | 3L | 5607552..5607683 | 509..378 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:58:44 has no hits.
BO11919.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:06 Download gff for
BO11919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eaf6-RA | 1..678 | 17..694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:03 Download gff for
BO11919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eaf6-RA | 8..690 | 17..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:31 Download gff for
BO11919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eaf6-RA | 68..742 | 17..693 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:06 Download gff for
BO11919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eaf6-RA | 8..690 | 17..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:31:35 Download gff for
BO11919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eaf6-RA | 68..742 | 17..693 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:31:35 Download gff for
BO11919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5607281..5607465 | 510..693 | 98 | <- | Minus |
3L | 5607552..5607683 | 378..509 | 100 | <- | Minus |
3L | 5607806..5608019 | 164..377 | 100 | <- | Minus |
3L | 5608087..5608233 | 17..163 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:31 Download gff for
BO11919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5600381..5600565 | 510..693 | 98 | <- | Minus |
arm_3L | 5600652..5600783 | 378..509 | 100 | <- | Minus |
arm_3L | 5600906..5601119 | 164..377 | 100 | <- | Minus |
arm_3L | 5601187..5601333 | 17..163 | 100 | | Minus |
BO11919.pep Sequence
Translation from 16 to 709
> BO11919.pep
MSSPTSKNVSETNGNKPKKSAKTSSNTKGGSMDTRAELADLIKKKAETSE
QLANLERQIYAFEGSYLEDTQLCGNIIRGWERYLTSNKATNSKADKRNRK
FKEAERLFSKSSITSMAICNPERASESDSITNEDSSDNQISINQNTTTAH
DGTTTIKSTPKDEKDSPSHRNEGSVVSGMVSGSTNSGGNKDLLGTPTSNT
KSKLSTNSSATAKKSGHINKKIRHRASFLDH
BO11919.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eaf6-PA | 225 | CG12756-PA | 1..225 | 1..225 | 1140 | 100 | Plus |