Clone Sequence Records
BO11920.3prime Sequence
877 bp (829 high quality bases) assembled on 2006-04-19
> BO11920.3prime
ATGGTCTAGAAAGCTTGCAATGGCCAGGGACGGCTTGGTATGGCTCTCCA
CCGGTGTTGCCAGTGGCAGTTGCTCCTTGGATTGTTCGCCAACTGAGTCC
ACCTGTTTCACCTCGGCATCCCCGGCACTCAGTTCCTTGGGTGGCTCCTC
TGCATCCTCGATGAGACGATAGGTAATGGGAGCGGGCTGCTTGGCCGGCA
ACCAGTCGGGGATGATCTTGTCGTGCAGTCGCCATTTGCCATACTCGTTC
GAAATGTGCTTCTCAAACACCACATATTCCAGCACGTCCTTGGTGATGAT
CTCGCTGCCGTGCATCAGGCGGCCGAAGCGGTCGTAGATGGCTAACATCT
GTTGGCTGTGGAAGCGCACGGTGACTTGAGCGAACTGGTTTTCCTTGGTG
ATCACCTCCGTCACGCGGGCATGGACAACGCGTGGTGGTTCCAGCGACTG
TAGAAACTTCCAGCGAATGGTCTTGTCCTTGACGTTGTGCATCATCTCCG
GATAACAGCGTTCGCTGACGAACTCGCGGATCTTGTACTTGTCCTTGGCA
GCCATGTGAGTGTGCGCCTGGATGTAAATATCCTGGGCCTCGGCGCCGAA
ATCATCGGAGCTGAAGTTTTCGTCGTAGGAACGAATCTTGCGCACGGCCA
TCAGGCTCTTGGACTTCTTCTCCAGGAACTCCAACTTCTGCTTGGCACCC
GATGTTGAAATGATCGACTTCTTGCCGTCGCCTTCAGGAGGGACATAAGC
CTCGAAGATGCCGCCCGTGCAGCTTATGTGGAAAGGGCGCTCCATCCAGG
GACGGGGCGGCAAGACACCTCGCTCCTTCATCCGGCTGCGCATCTCCTCC
TTGGTGATATCCTCCTGTTTCTCGCGC
BO11920.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6949-PA | 1086 | mRpL45-RA | 225..1083 | 877..19 | 4295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL45-RA | 1268 | CG6949-RA | 303..1161 | 877..19 | 4295 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22618861..22619719 | 877..19 | 4295 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:28:31 has no hits.
BO11920.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:20:36 Download gff for
BO11920.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6949-PA | 225..1086 | 16..877 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:49:55 Download gff for
BO11920.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6949-PA | 225..1086 | 16..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 23:29:16 Download gff for
BO11920.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL45-RA | 332..1190 | 19..877 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:31:58 Download gff for
BO11920.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL45-RA | 303..1161 | 19..877 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:31:58 Download gff for
BO11920.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22618861..22619719 | 19..877 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 23:29:16 Download gff for
BO11920.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18444583..18445441 | 19..877 | 100 | | Minus |
BO11920.5prime Sequence
859 bp (791 high quality bases) assembled on 2006-04-19
> BO11920.5prime
GAAGTTATCAGTCGACATGGAGAAGCTAGCGTCGGCCAAAACGTGTCTTA
AACTGCTGCAGGTTATGCCCGGCGTGCAGCAGGCGGCCCTTCTTCCTGGT
GGTGGCCTGGGCGTGCTCGCTTCTCCTCTTCAGAATCTGATCCAGATGCA
GCAGGTGCGCCACCGACAAACCAAGCACTGGAAGCCCGAGTTCAAGCGCC
TTCGTAAGCTCAAGTTCGTAAAGATGGATCTGCCCAATCTGCGCGAGAAA
CAGGAGGATATCACCAAGGAGGAGATGCGCAGCCGGATGAAGGAGCGAGG
TGTCTTGCCGCCCCGTCCCTGGATGGAGCGCCCTTTCCACATAAGCTGCA
CGGGCGGCATCTTCGAGGCTTATGTCCCTCCTGAAGGCGACGGCAAGAAG
TCGATCATTTCAACATCGGGTGCCAAGCAGAAGTTGGAGTTCCTGGAGAA
GAAGTCCAAGAGCCTGATGGCCGTGCGCAAGATTCGTTCCTACGACGAAA
ACTTCAGCTCCGATGATTTCGGCGCCGAGGCCCAGGATATTTACATCCAG
GCGCACACTCACATGGCTGCCAAGGACAAGTACAAGATCCGCGAGTTCGT
CAGCGAACGCTGTTATCCGGAGATGATGCACAACGTCAAGGACAAGACCA
TTCGCTGGAAGTTTCTACAGTCGCTGGAACCACCACGCGTTGTCCATGCC
CGCGTGACGGAGGTGATCACCAAGGAAAACCAGTTCGCTCAAGTCACCGT
GCGCTTCCACAGCCAACAGATGTTAGCCATCTACGACCGCTTCGGCCGCC
TGATGCACGGCAGCGAGATCATCACCCAGGACGTGCTGGAATATGTGGTG
TTTGAGAAG
BO11920.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6949-PA | 1086 | mRpL45-RA | 1..843 | 17..859 | 4190 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:07:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL45-RA | 1268 | CG6949-RA | 79..921 | 17..859 | 4200 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 07:07:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22618679..22619479 | 59..859 | 3990 | 99.9 | Plus |
| 3R | 32079331 | 3R | 22618570..22618616 | 17..63 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 07:07:11 has no hits.
BO11920.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:20:37 Download gff for
BO11920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6949-PA | 1..843 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:49:57 Download gff for
BO11920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6949-PA | 1..843 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 09:28:56 Download gff for
BO11920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL45-RA | 108..950 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 10:46:51 Download gff for
BO11920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL45-RA | 79..921 | 17..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 10:46:51 Download gff for
BO11920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22618570..22618614 | 17..61 | 100 | -> | Plus |
| 3R | 22618682..22619479 | 62..859 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 09:28:56 Download gff for
BO11920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18444292..18444336 | 17..61 | 100 | -> | Plus |
| arm_3R | 18444404..18445201 | 62..859 | 99 | | Plus |
BO11920.complete Sequence
1117 bp assembled on 2006-10-11
GenBank Submission: FJ632247
> BO11920.complete
GAAGTTATCAGTCGACATGGAGAAGCTAGCGTCGGCCAAAACGTGTCTTA
AACTGCTGCAGGTTATGCCCGGCGTGCAGCAGGCGGCCCTTCTTCCTGGT
GGTGGCCTGGGCGTGCTCGCTTCTCCTCTTCAGAATCTGATCCAGATGCA
GCAGGTGCGCCACCGACAAACCAAGCACTGGAAGCCCGAGTTCAAGCGCC
TTCGTAAGCTCAAGTTCGTAAAGATGGATCTGCCCAATCTGCGCGAGAAA
CAGGAGGATATCACCAAGGAGGAGATGCGCAGCCGGATGAAGGAGCGAGG
TGTCTTGCCGCCCCGTCCCTGGATGGAGCGCCCTTTCCACATAAGCTGCA
CGGGCGGCATCTTCGAGGCTTATGTCCCTCCTGAAGGCGACGGCAAGAAG
TCGATCATTTCAACATCGGGTGCCAAGCAGAAGTTGGAGTTCCTGGAGAA
GAAGTCCAAGAGCCTGATGGCCGTGCGCAAGATTCGTTCCTACGACGAAA
ACTTCAGCTCCGATGATTTCGGCGCCGAGGCCCAGGATATTTACATCCAG
GCGCACACTCACATGGCTGCCAAGGACAAGTACAAGATCCGCGAGTTCGT
CAGCGAACGCTGTTATCCGGAGATGATGCACAACGTCAAGGACAAGACCA
TTCGCTGGAAGTTTCTACAGTCGCTGGAACCACCACGCGTTGTCCATGCC
CGCGTGACGGAGGTGATCACCAAGGAAAACCAGTTCGCTCAAGTCACCGT
GCGCTTCCACAGCCAACAGATGTTAGCCATCTACGACCGCTTCGGCCGCC
TGATGCACGGCAGCGAGATCATCACCAAGGACGTGCTGGAATATGTGGTG
TTTGAGAAGCACATTTCGAACGAGTATGGCAAATGGCGACTGCACGACAA
GATCATCCCCGACTGGTTGCCGGCCAAGCAGCCCGCTCCCATTACCTATC
GTCTCATCGAGGATGCAGAGGAGCCACCCAAGGAACTGAGTGCCGGGGAT
GCCGAGGTGAAACAGGTGGACTCAGTTGGCGAACAATCCAAGGAGCAACT
GCCACTGGCAACACCGGTGGAGAGCCATACCAAGCCGTCCCTGGCCATTG
CAAGCTTTCTAGACCAT
BO11920.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:00:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL45-RA | 1086 | CG6949-PA | 1..1083 | 17..1099 | 5415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:00:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL45-RA | 1268 | CG6949-RA | 79..1161 | 17..1099 | 5415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:00:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22618679..22619719 | 59..1099 | 5205 | 100 | Plus |
| 3R | 32079331 | 3R | 22618570..22618616 | 17..63 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:00:28 has no hits.
BO11920.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:07 Download gff for
BO11920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL45-RA | 1..1086 | 17..1102 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:05 Download gff for
BO11920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL45-RA | 88..1170 | 17..1099 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:43:30 Download gff for
BO11920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL45-RA | 108..1190 | 17..1101 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:08 Download gff for
BO11920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL45-RA | 88..1170 | 17..1099 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:40 Download gff for
BO11920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL45-RA | 79..1161 | 17..1101 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:40 Download gff for
BO11920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22618570..22618614 | 17..61 | 100 | -> | Plus |
| 3R | 22618682..22619719 | 62..1101 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:43:30 Download gff for
BO11920.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18444292..18444336 | 17..61 | 100 | -> | Plus |
| arm_3R | 18444404..18445441 | 62..1101 | 99 | | Plus |
BO11920.pep Sequence
Translation from 16 to 1117
> BO11920.pep
MEKLASAKTCLKLLQVMPGVQQAALLPGGGLGVLASPLQNLIQMQQVRHR
QTKHWKPEFKRLRKLKFVKMDLPNLREKQEDITKEEMRSRMKERGVLPPR
PWMERPFHISCTGGIFEAYVPPEGDGKKSIISTSGAKQKLEFLEKKSKSL
MAVRKIRSYDENFSSDDFGAEAQDIYIQAHTHMAAKDKYKIREFVSERCY
PEMMHNVKDKTIRWKFLQSLEPPRVVHARVTEVITKENQFAQVTVRFHSQ
QMLAIYDRFGRLMHGSEIITKDVLEYVVFEKHISNEYGKWRLHDKIIPDW
LPAKQPAPITYRLIEDAEEPPKELSAGDAEVKQVDSVGEQSKEQLPLATP
VESHTKPSLAIASFLDH
BO11920.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL45-PA | 361 | CG6949-PA | 1..361 | 1..361 | 1880 | 100 | Plus |
