Clone Sequence Records
BO11932.3prime Sequence
796 bp (787 high quality bases) assembled on 2006-04-19
> BO11932.3prime
ATGGTCTAGAAAGCTTGCATCATCGCGAGGAAGGGGATTAAACTGCGTTA
GCACCTTGGAGATCTCTTGGGCCAACTCTGGTGTGGCTGCCGCCAGGACC
CTTCGAGACATGATGTCGAATTCGCCGCCAGCAGGATCGATGACCACGCC
TCCGGCCTCCCGGACAATCAAGTCGCCGGCACACACATCCCAGGCGTGAA
TTCCAAATTCATAGTTAGCGTCGGCGGCTCCCAAAGCAACCATCGACATA
TTGAGAGCTGCCGAACCCAGGACCCGTAGGCCATGCGCCTTTTTGGCCAT
CTTCTCGAAGTTTTCATGCACGACCTTCATCTTGGCCTCGTCCCGGGTGG
TACCGAATTCACTGGTAACCAGCGCTTTGCCCAGTTCCTTCTGGCCGCTA
ACGTGGATCCTGCGCCCGTTGTAGAAGGCTCCGTGCCCTCGTCTCGCAGT
AAAGCGTTGCTCTAGAATGGGATTGTAGACCAAGCCCAGCTCCGTGACCT
TGTTCACCTTCAGACCCACGGAGATGCAAGAGTGCGGAAAGGCGTGCACA
AAGTTCATGGTGCCGTCCACGGGATCAATGATCCAGGTGGGCTCATCGGT
CAGCTTCTTGACACCCTCCGCGCCGCTACTCTCCTCCTCGCCGATGAACT
TGTGCTCCGGAAAGTGGCGACGAATGCCGTCCATCAGCAGCTGCTCCACA
TCCTTGTCTGTTTGGGTCACCAAGTCGATGTCATTGCTCTTGCAAACGAA
GTCCCTGTCGCTGCTCATTGTTGCGAGCGATGAGCCTTCCCGCTTC
BO11932.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9391-PB | 1014 | CG9391-RB | 276..1011 | 754..19 | 3680 | 100 | Minus |
CG9391-PA | 837 | CG9391-RA | 99..834 | 754..19 | 3680 | 100 | Minus |
CG9391-PB | 1014 | CG9391-RB | 235..277 | 796..754 | 190 | 97.6 | Minus |
CG9391-PA | 837 | CG9391-RA | 58..100 | 796..754 | 190 | 97.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:50:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9391-RC | 1171 | CG9391-RC | 231..1007 | 796..19 | 3850 | 99.7 | Minus |
CG9391-RA | 1104 | CG9391-RA | 164..940 | 796..19 | 3850 | 99.7 | Minus |
CG9389-RA | 2043 | CG9389-RA | 1214..1301 | 603..516 | 260 | 86.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:50:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21267167..21267535 | 281..649 | 1845 | 100 | Plus |
3L | 28110227 | 3L | 21266844..21267106 | 19..281 | 1315 | 100 | Plus |
3L | 28110227 | 3L | 21267585..21267721 | 648..785 | 640 | 99.3 | Plus |
3L | 28110227 | 3L | 21269202..21269289 | 516..603 | 260 | 86.4 | Plus |
3L | 28110227 | 3L | 15977335..15977429 | 605..511 | 190 | 80 | Minus |
Blast to na_te.dros performed 2015-02-12 04:50:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1-2 | 3216 | R1-2 R1-2 3216bp | 1494..1547 | 101..154 | 108 | 66.7 | Plus |
BO11932.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:20:56 Download gff for
BO11932.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9391-PA | 58..837 | 15..796 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:50:26 Download gff for
BO11932.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9391-PA | 58..837 | 15..796 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:29:10 Download gff for
BO11932.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9391-RA | 164..944 | 14..796 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:38 Download gff for
BO11932.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9391-RA | 164..944 | 14..796 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:38 Download gff for
BO11932.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21266840..21267105 | 14..280 | 99 | <- | Plus |
3L | 21267167..21267535 | 281..649 | 100 | <- | Plus |
3L | 21267587..21267721 | 650..785 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:29:10 Download gff for
BO11932.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21259940..21260205 | 14..280 | 99 | <- | Plus |
arm_3L | 21260267..21260635 | 281..649 | 100 | <- | Plus |
arm_3L | 21260687..21260821 | 650..785 | 99 | | Plus |
BO11932.5prime Sequence
870 bp (854 high quality bases) assembled on 2006-04-19
> BO11932.5prime
GAAGTTATCAGTCGACATGTCACACAACGTGGACGTGGAAAAGTGCTTAG
AGGTGGCCAGCAACCTGGTTTCCGAAGCCGGAAGGCTCATCGCTCGCAAC
AATGAGCAGCGACAGGACTTCGTTTGCAAGAGCAATGACATCGACTTGGT
GACCCAAACAGACAAGGATGTGGAGCAGCTGCTGATGGACGGCATTCGTC
GCCACTTTCCGGAGCACAAGTTCATCGGCGAGGAGGAGAGTAGCGGCGCG
GAGGGTGTCAAGAAGCTGACCGATGAGCCCACCTGGATCATTGATCCCGT
GGACGGCACCATGAACTTTGTGCACGCCTTTCCGCACTCTTGCATCTCCG
TGGGTCTGAAGGTGAACAAGGTCACGGAGCTGGGCTTGGTCTACAATCCC
ATTCTAGAGCAACGCTTTACTGCGAGACGAGGGCACGGAGCCTTCTACAA
CGGGCGCAGGATCCACGTTAGCGGCCAGAAGGAACTGGGCAAAGCGCTGG
TTACCAGTGAATTCGGTACCACCCGGGACGAGGCCAAGATGAAGGTCGTG
CATGAAAACTTCGAGAAGATGGCCAAAAAGGCGCATGGCCTACGGGTCCT
GGGTTCGGCAGCTCTCAATATGTCGATGGTTGCTTTGGGAGCCGCCGACG
CTAACTATGAATTTGGAATTCACGCCTGGGATGTGTGTGCCGGCGACTTG
ATTGTCCGGGAGGCCGGAGGCGTGGTCATCGATCCTGCTGGCGGCGAATT
CGACATCATGTCTCGAAGGGTCCTGGCGGCAGCCACACCAGAGTTGGCCC
AAGAGATCTCCAAGGTGCTAACGCAGTTTAATCCCCTTCCTCGCGATGAT
GCAAGCTTTCTAGACCATTC
BO11932.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9391-PB | 1014 | CG9391-RB | 178..1011 | 17..850 | 4170 | 100 | Plus |
CG9391-PA | 837 | CG9391-RA | 1..834 | 17..850 | 4170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:18:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9391-RC | 1171 | CG9391-RC | 174..1007 | 17..850 | 4170 | 100 | Plus |
CG9391-RA | 1104 | CG9391-RA | 107..940 | 17..850 | 4170 | 100 | Plus |
CG9389-RA | 2043 | CG9389-RA | 1214..1301 | 266..353 | 260 | 86.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:18:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21267167..21267535 | 588..220 | 1845 | 100 | Minus |
3L | 28110227 | 3L | 21266844..21267106 | 850..588 | 1315 | 100 | Minus |
3L | 28110227 | 3L | 21267585..21267721 | 221..85 | 685 | 100 | Minus |
3L | 28110227 | 3L | 21267791..21267859 | 85..17 | 345 | 100 | Minus |
3L | 28110227 | 3L | 21269202..21269289 | 353..266 | 260 | 86.4 | Minus |
3L | 28110227 | 3L | 15977335..15977429 | 264..358 | 190 | 80 | Plus |
Blast to na_te.dros performed 2015-02-12 05:18:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1-2 | 3216 | R1-2 R1-2 3216bp | 1494..1547 | 768..715 | 108 | 66.7 | Minus |
BO11932.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:20:57 Download gff for
BO11932.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9391-PA | 1..837 | 17..854 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:50:27 Download gff for
BO11932.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9391-PA | 1..837 | 17..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:57:52 Download gff for
BO11932.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9391-RA | 107..944 | 17..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:28:48 Download gff for
BO11932.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9391-RA | 107..944 | 17..855 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:28:48 Download gff for
BO11932.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21266840..21267105 | 589..855 | 99 | <- | Minus |
3L | 21267167..21267535 | 220..588 | 100 | <- | Minus |
3L | 21267587..21267720 | 86..219 | 100 | <- | Minus |
3L | 21267791..21267859 | 17..85 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:57:52 Download gff for
BO11932.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21259940..21260205 | 589..855 | 99 | <- | Minus |
arm_3L | 21260267..21260635 | 220..588 | 100 | <- | Minus |
arm_3L | 21260687..21260820 | 86..219 | 100 | <- | Minus |
arm_3L | 21260891..21260959 | 17..85 | 100 | | Minus |
BO11932.complete Sequence
868 bp assembled on 2006-10-11
GenBank Submission: FJ632249
> BO11932.complete
GAAGTTATCAGTCGACATGTCACACAACGTGGACGTGGAAAAGTGCTTAG
AGGTGGCCAGCAACCTGGTTTCCGAAGCCGGAAGGCTCATCGCTCGCAAC
AATGAGCAGCGACAGGACTTCGTTTGCAAGAGCAATGACATCGACTTGGT
GACCCAAACAGACAAGGATGTGGAGCAGCTGCTGATGGACGGCATTCGTC
GCCACTTTCCGGAGCACAAGTTCATCGGCGAGGAGGAGAGTAGCGGCGCG
GAGGGTGTCAAGAAGCTGACCGATGAGCCCACCTGGATCATTGATCCCGT
GGACGGCACCATGAACTTTGTGCACGCCTTTCCGCACTCTTGCATCTCCG
TGGGTCTGAAGGTGAACAAGGTCACGGAGCTGGGCTTGGTCTACAATCCC
ATTCTAGAGCAACGCTTTACTGCGAGACGAGGGCACGGAGCCTTCTACAA
CGGGCGCAGGATCCACGTTAGCGGCCAGAAGGAACTGGGCAAAGCGCTGG
TTACCAGTGAATTCGGTACCACCCGGGACGAGGCCAAGATGAAGGTCGTG
CATGAAAACTTCGAGAAGATGGCCAAAAAGGCGCATGGCCTACGGGTCCT
GGGTTCGGCAGCTCTCAATATGTCGATGGTTGCTTTGGGAGCCGCCGACG
CTAACTATGAATTTGGAATTCACGCCTGGGATGTGTGTGCCGGCGACTTG
ATTGTCCGGGAGGCCGGAGGCGTGGTCATCGATCCTGCTGGCGGCGAATT
CGACATCATGTCTCGAAGGGTCCTGGCGGCAGCCACACCAGAGTTGGCCC
AAGAGATCTCCAAGGTGCTAACGCAGTTTAATCCCCTTCCTCGCGATGAT
GCAAGCTTTCTAGACCAT
BO11932.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:56:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9391-RC | 837 | CG9391-PC | 1..834 | 17..850 | 4170 | 100 | Plus |
CG9391-RA | 837 | CG9391-PA | 1..834 | 17..850 | 4170 | 100 | Plus |
CG9389-RA | 1791 | CG9389-PA | 1060..1147 | 266..353 | 260 | 86.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:56:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9391-RC | 1171 | CG9391-RC | 174..1007 | 17..850 | 4170 | 100 | Plus |
CG9391-RA | 1104 | CG9391-RA | 107..940 | 17..850 | 4170 | 100 | Plus |
CG9389-RA | 2043 | CG9389-RA | 1214..1301 | 266..353 | 260 | 86.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:56:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21267167..21267535 | 588..220 | 1845 | 100 | Minus |
3L | 28110227 | 3L | 21266844..21267106 | 850..588 | 1315 | 100 | Minus |
3L | 28110227 | 3L | 21267585..21267721 | 221..85 | 685 | 100 | Minus |
3L | 28110227 | 3L | 21267791..21267859 | 85..17 | 345 | 100 | Minus |
3L | 28110227 | 3L | 21269202..21269289 | 353..266 | 260 | 86.4 | Minus |
3L | 28110227 | 3L | 15977335..15977429 | 264..358 | 190 | 80 | Plus |
Blast to na_te.dros performed 2014-11-28 00:56:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1-2 | 3216 | R1-2 R1-2 3216bp | 1494..1547 | 768..715 | 108 | 66.7 | Minus |
BO11932.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:09 Download gff for
BO11932.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9391-RA | 1..837 | 17..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:07 Download gff for
BO11932.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9391-RA | 84..921 | 17..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:36 Download gff for
BO11932.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9391-RA | 107..940 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:09 Download gff for
BO11932.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9391-RA | 84..921 | 17..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:43 Download gff for
BO11932.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9391-RA | 107..940 | 17..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:43 Download gff for
BO11932.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21266842..21267105 | 589..852 | 99 | <- | Minus |
3L | 21267167..21267535 | 220..588 | 100 | <- | Minus |
3L | 21267587..21267720 | 86..219 | 100 | <- | Minus |
3L | 21267791..21267859 | 17..85 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:36 Download gff for
BO11932.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21259942..21260205 | 589..852 | 99 | <- | Minus |
arm_3L | 21260267..21260635 | 220..588 | 100 | <- | Minus |
arm_3L | 21260687..21260820 | 86..219 | 100 | <- | Minus |
arm_3L | 21260891..21260959 | 17..85 | 100 | | Minus |
BO11932.pep Sequence
Translation from 16 to 868
> BO11932.pep
MSHNVDVEKCLEVASNLVSEAGRLIARNNEQRQDFVCKSNDIDLVTQTDK
DVEQLLMDGIRRHFPEHKFIGEEESSGAEGVKKLTDEPTWIIDPVDGTMN
FVHAFPHSCISVGLKVNKVTELGLVYNPILEQRFTARRGHGAFYNGRRIH
VSGQKELGKALVTSEFGTTRDEAKMKVVHENFEKMAKKAHGLRVLGSAAL
NMSMVALGAADANYEFGIHAWDVCAGDLIVREAGGVVIDPAGGEFDIMSR
RVLAAATPELAQEISKVLTQFNPLPRDDASFLDH
BO11932.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9391-PC | 278 | CG9391-PC | 1..278 | 1..278 | 1437 | 100 | Plus |
CG9391-PA | 278 | CG9391-PA | 1..278 | 1..278 | 1437 | 100 | Plus |
CG9389-PA | 596 | CG9389-PA | 275..548 | 6..278 | 667 | 47.8 | Plus |
CG17029-PB | 284 | CG17029-PB | 15..274 | 12..270 | 515 | 40.4 | Plus |
CG17029-PA | 284 | CG17029-PA | 15..274 | 12..270 | 515 | 40.4 | Plus |