Clone BO11932 Report

Search the DGRC for BO11932

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:119
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptCG9391-RA
Protein status:BO11932.pep: validated full length
Sequenced Size:868

Clone Sequence Records

BO11932.3prime Sequence

796 bp (787 high quality bases) assembled on 2006-04-19

> BO11932.3prime
ATGGTCTAGAAAGCTTGCATCATCGCGAGGAAGGGGATTAAACTGCGTTA
GCACCTTGGAGATCTCTTGGGCCAACTCTGGTGTGGCTGCCGCCAGGACC
CTTCGAGACATGATGTCGAATTCGCCGCCAGCAGGATCGATGACCACGCC
TCCGGCCTCCCGGACAATCAAGTCGCCGGCACACACATCCCAGGCGTGAA
TTCCAAATTCATAGTTAGCGTCGGCGGCTCCCAAAGCAACCATCGACATA
TTGAGAGCTGCCGAACCCAGGACCCGTAGGCCATGCGCCTTTTTGGCCAT
CTTCTCGAAGTTTTCATGCACGACCTTCATCTTGGCCTCGTCCCGGGTGG
TACCGAATTCACTGGTAACCAGCGCTTTGCCCAGTTCCTTCTGGCCGCTA
ACGTGGATCCTGCGCCCGTTGTAGAAGGCTCCGTGCCCTCGTCTCGCAGT
AAAGCGTTGCTCTAGAATGGGATTGTAGACCAAGCCCAGCTCCGTGACCT
TGTTCACCTTCAGACCCACGGAGATGCAAGAGTGCGGAAAGGCGTGCACA
AAGTTCATGGTGCCGTCCACGGGATCAATGATCCAGGTGGGCTCATCGGT
CAGCTTCTTGACACCCTCCGCGCCGCTACTCTCCTCCTCGCCGATGAACT
TGTGCTCCGGAAAGTGGCGACGAATGCCGTCCATCAGCAGCTGCTCCACA
TCCTTGTCTGTTTGGGTCACCAAGTCGATGTCATTGCTCTTGCAAACGAA
GTCCCTGTCGCTGCTCATTGTTGCGAGCGATGAGCCTTCCCGCTTC

BO11932.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9391-PB 1014 CG9391-RB 276..1011 754..19 3680 100 Minus
CG9391-PA 837 CG9391-RA 99..834 754..19 3680 100 Minus
CG9391-PB 1014 CG9391-RB 235..277 796..754 190 97.6 Minus
CG9391-PA 837 CG9391-RA 58..100 796..754 190 97.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9391-RC 1171 CG9391-RC 231..1007 796..19 3850 99.7 Minus
CG9391-RA 1104 CG9391-RA 164..940 796..19 3850 99.7 Minus
CG9389-RA 2043 CG9389-RA 1214..1301 603..516 260 86.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21267167..21267535 281..649 1845 100 Plus
3L 28110227 3L 21266844..21267106 19..281 1315 100 Plus
3L 28110227 3L 21267585..21267721 648..785 640 99.3 Plus
3L 28110227 3L 21269202..21269289 516..603 260 86.4 Plus
3L 28110227 3L 15977335..15977429 605..511 190 80 Minus
Blast to na_te.dros performed 2015-02-12 04:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
R1-2 3216 R1-2 R1-2 3216bp 1494..1547 101..154 108 66.7 Plus

BO11932.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:20:56 Download gff for BO11932.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9391-PA 58..837 15..796 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:50:26 Download gff for BO11932.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9391-PA 58..837 15..796 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:29:10 Download gff for BO11932.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9391-RA 164..944 14..796 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:38 Download gff for BO11932.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9391-RA 164..944 14..796 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:38 Download gff for BO11932.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21266840..21267105 14..280 99 <- Plus
3L 21267167..21267535 281..649 100 <- Plus
3L 21267587..21267721 650..785 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:29:10 Download gff for BO11932.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21259940..21260205 14..280 99 <- Plus
arm_3L 21260267..21260635 281..649 100 <- Plus
arm_3L 21260687..21260821 650..785 99   Plus

BO11932.5prime Sequence

870 bp (854 high quality bases) assembled on 2006-04-19

> BO11932.5prime
GAAGTTATCAGTCGACATGTCACACAACGTGGACGTGGAAAAGTGCTTAG
AGGTGGCCAGCAACCTGGTTTCCGAAGCCGGAAGGCTCATCGCTCGCAAC
AATGAGCAGCGACAGGACTTCGTTTGCAAGAGCAATGACATCGACTTGGT
GACCCAAACAGACAAGGATGTGGAGCAGCTGCTGATGGACGGCATTCGTC
GCCACTTTCCGGAGCACAAGTTCATCGGCGAGGAGGAGAGTAGCGGCGCG
GAGGGTGTCAAGAAGCTGACCGATGAGCCCACCTGGATCATTGATCCCGT
GGACGGCACCATGAACTTTGTGCACGCCTTTCCGCACTCTTGCATCTCCG
TGGGTCTGAAGGTGAACAAGGTCACGGAGCTGGGCTTGGTCTACAATCCC
ATTCTAGAGCAACGCTTTACTGCGAGACGAGGGCACGGAGCCTTCTACAA
CGGGCGCAGGATCCACGTTAGCGGCCAGAAGGAACTGGGCAAAGCGCTGG
TTACCAGTGAATTCGGTACCACCCGGGACGAGGCCAAGATGAAGGTCGTG
CATGAAAACTTCGAGAAGATGGCCAAAAAGGCGCATGGCCTACGGGTCCT
GGGTTCGGCAGCTCTCAATATGTCGATGGTTGCTTTGGGAGCCGCCGACG
CTAACTATGAATTTGGAATTCACGCCTGGGATGTGTGTGCCGGCGACTTG
ATTGTCCGGGAGGCCGGAGGCGTGGTCATCGATCCTGCTGGCGGCGAATT
CGACATCATGTCTCGAAGGGTCCTGGCGGCAGCCACACCAGAGTTGGCCC
AAGAGATCTCCAAGGTGCTAACGCAGTTTAATCCCCTTCCTCGCGATGAT
GCAAGCTTTCTAGACCATTC

BO11932.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9391-PB 1014 CG9391-RB 178..1011 17..850 4170 100 Plus
CG9391-PA 837 CG9391-RA 1..834 17..850 4170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:18:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG9391-RC 1171 CG9391-RC 174..1007 17..850 4170 100 Plus
CG9391-RA 1104 CG9391-RA 107..940 17..850 4170 100 Plus
CG9389-RA 2043 CG9389-RA 1214..1301 266..353 260 86.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21267167..21267535 588..220 1845 100 Minus
3L 28110227 3L 21266844..21267106 850..588 1315 100 Minus
3L 28110227 3L 21267585..21267721 221..85 685 100 Minus
3L 28110227 3L 21267791..21267859 85..17 345 100 Minus
3L 28110227 3L 21269202..21269289 353..266 260 86.4 Minus
3L 28110227 3L 15977335..15977429 264..358 190 80 Plus
Blast to na_te.dros performed 2015-02-12 05:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
R1-2 3216 R1-2 R1-2 3216bp 1494..1547 768..715 108 66.7 Minus

BO11932.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:20:57 Download gff for BO11932.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9391-PA 1..837 17..854 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:50:27 Download gff for BO11932.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9391-PA 1..837 17..854 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:57:52 Download gff for BO11932.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9391-RA 107..944 17..855 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:28:48 Download gff for BO11932.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9391-RA 107..944 17..855 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:28:48 Download gff for BO11932.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21266840..21267105 589..855 99 <- Minus
3L 21267167..21267535 220..588 100 <- Minus
3L 21267587..21267720 86..219 100 <- Minus
3L 21267791..21267859 17..85 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:57:52 Download gff for BO11932.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21259940..21260205 589..855 99 <- Minus
arm_3L 21260267..21260635 220..588 100 <- Minus
arm_3L 21260687..21260820 86..219 100 <- Minus
arm_3L 21260891..21260959 17..85 100   Minus

BO11932.complete Sequence

868 bp assembled on 2006-10-11

GenBank Submission: FJ632249

> BO11932.complete
GAAGTTATCAGTCGACATGTCACACAACGTGGACGTGGAAAAGTGCTTAG
AGGTGGCCAGCAACCTGGTTTCCGAAGCCGGAAGGCTCATCGCTCGCAAC
AATGAGCAGCGACAGGACTTCGTTTGCAAGAGCAATGACATCGACTTGGT
GACCCAAACAGACAAGGATGTGGAGCAGCTGCTGATGGACGGCATTCGTC
GCCACTTTCCGGAGCACAAGTTCATCGGCGAGGAGGAGAGTAGCGGCGCG
GAGGGTGTCAAGAAGCTGACCGATGAGCCCACCTGGATCATTGATCCCGT
GGACGGCACCATGAACTTTGTGCACGCCTTTCCGCACTCTTGCATCTCCG
TGGGTCTGAAGGTGAACAAGGTCACGGAGCTGGGCTTGGTCTACAATCCC
ATTCTAGAGCAACGCTTTACTGCGAGACGAGGGCACGGAGCCTTCTACAA
CGGGCGCAGGATCCACGTTAGCGGCCAGAAGGAACTGGGCAAAGCGCTGG
TTACCAGTGAATTCGGTACCACCCGGGACGAGGCCAAGATGAAGGTCGTG
CATGAAAACTTCGAGAAGATGGCCAAAAAGGCGCATGGCCTACGGGTCCT
GGGTTCGGCAGCTCTCAATATGTCGATGGTTGCTTTGGGAGCCGCCGACG
CTAACTATGAATTTGGAATTCACGCCTGGGATGTGTGTGCCGGCGACTTG
ATTGTCCGGGAGGCCGGAGGCGTGGTCATCGATCCTGCTGGCGGCGAATT
CGACATCATGTCTCGAAGGGTCCTGGCGGCAGCCACACCAGAGTTGGCCC
AAGAGATCTCCAAGGTGCTAACGCAGTTTAATCCCCTTCCTCGCGATGAT
GCAAGCTTTCTAGACCAT

BO11932.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:56:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG9391-RC 837 CG9391-PC 1..834 17..850 4170 100 Plus
CG9391-RA 837 CG9391-PA 1..834 17..850 4170 100 Plus
CG9389-RA 1791 CG9389-PA 1060..1147 266..353 260 86.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:56:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG9391-RC 1171 CG9391-RC 174..1007 17..850 4170 100 Plus
CG9391-RA 1104 CG9391-RA 107..940 17..850 4170 100 Plus
CG9389-RA 2043 CG9389-RA 1214..1301 266..353 260 86.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21267167..21267535 588..220 1845 100 Minus
3L 28110227 3L 21266844..21267106 850..588 1315 100 Minus
3L 28110227 3L 21267585..21267721 221..85 685 100 Minus
3L 28110227 3L 21267791..21267859 85..17 345 100 Minus
3L 28110227 3L 21269202..21269289 353..266 260 86.4 Minus
3L 28110227 3L 15977335..15977429 264..358 190 80 Plus
Blast to na_te.dros performed 2014-11-28 00:56:01
Subject Length Description Subject Range Query Range Score Percent Strand
R1-2 3216 R1-2 R1-2 3216bp 1494..1547 768..715 108 66.7 Minus

BO11932.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:49:09 Download gff for BO11932.complete
Subject Subject Range Query Range Percent Splice Strand
CG9391-RA 1..837 17..854 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:04:07 Download gff for BO11932.complete
Subject Subject Range Query Range Percent Splice Strand
CG9391-RA 84..921 17..855 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:36 Download gff for BO11932.complete
Subject Subject Range Query Range Percent Splice Strand
CG9391-RA 107..940 17..852 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:49:09 Download gff for BO11932.complete
Subject Subject Range Query Range Percent Splice Strand
CG9391-RA 84..921 17..855 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:43 Download gff for BO11932.complete
Subject Subject Range Query Range Percent Splice Strand
CG9391-RA 107..940 17..852 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:43 Download gff for BO11932.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21266842..21267105 589..852 99 <- Minus
3L 21267167..21267535 220..588 100 <- Minus
3L 21267587..21267720 86..219 100 <- Minus
3L 21267791..21267859 17..85 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:36 Download gff for BO11932.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21259942..21260205 589..852 99 <- Minus
arm_3L 21260267..21260635 220..588 100 <- Minus
arm_3L 21260687..21260820 86..219 100 <- Minus
arm_3L 21260891..21260959 17..85 100   Minus

BO11932.pep Sequence

Translation from 16 to 868

> BO11932.pep
MSHNVDVEKCLEVASNLVSEAGRLIARNNEQRQDFVCKSNDIDLVTQTDK
DVEQLLMDGIRRHFPEHKFIGEEESSGAEGVKKLTDEPTWIIDPVDGTMN
FVHAFPHSCISVGLKVNKVTELGLVYNPILEQRFTARRGHGAFYNGRRIH
VSGQKELGKALVTSEFGTTRDEAKMKVVHENFEKMAKKAHGLRVLGSAAL
NMSMVALGAADANYEFGIHAWDVCAGDLIVREAGGVVIDPAGGEFDIMSR
RVLAAATPELAQEISKVLTQFNPLPRDDASFLDH

BO11932.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9391-PC 278 CG9391-PC 1..278 1..278 1437 100 Plus
CG9391-PA 278 CG9391-PA 1..278 1..278 1437 100 Plus
CG9389-PA 596 CG9389-PA 275..548 6..278 667 47.8 Plus
CG17029-PB 284 CG17029-PB 15..274 12..270 515 40.4 Plus
CG17029-PA 284 CG17029-PA 15..274 12..270 515 40.4 Plus