Clone Sequence Records
BO11934.3prime Sequence
416 bp (415 high quality bases) assembled on 2006-04-19
> BO11934.3prime
ATGGTCTAGAAAGCTTGCCTTCAACTTCTTCTTGGGGCGCAGGTTGTTGG
TGTGTCCGCACTTCTTCTTGCGGCAGTTGGTGGCACGAGGATGCAGACGG
GCGTAGCACTTGCGGCAGATCATCTTGTCGCAGTTGTACTTCTGGGCCAG
AATCCTGAGCGAGGGCTCAATGATACCACCACGCAGGCGGAGCACCAAGT
GCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGGCCATCC
TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCC
CTCCTTATCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCT
CCACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGC
ATGTCGACTGATAACT
BO11934.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2960-PA | 387 | RpL40-RA | 1..384 | 402..19 | 1920 | 100 | Minus |
CG11624-PA | 2292 | Ubi-p63E-RA | 709..914 | 378..173 | 530 | 90.2 | Minus |
CG11624-PA | 2292 | Ubi-p63E-RA | 1393..1598 | 378..173 | 530 | 90.2 | Minus |
CG11624-PA | 2292 | Ubi-p63E-RA | 1849..2054 | 378..173 | 530 | 90.2 | Minus |
CG11624-PC | 2292 | Ubi-p63E-RC | 709..914 | 378..173 | 530 | 90.2 | Minus |
CG11624-PC | 2292 | Ubi-p63E-RC | 1393..1598 | 378..173 | 530 | 90.2 | Minus |
CG11624-PC | 2292 | Ubi-p63E-RC | 1849..2054 | 378..173 | 530 | 90.2 | Minus |
CG11624-PB | 2292 | Ubi-p63E-RB | 709..914 | 378..173 | 530 | 90.2 | Minus |
CG11624-PB | 2292 | Ubi-p63E-RB | 1393..1598 | 378..173 | 530 | 90.2 | Minus |
CG11624-PB | 2292 | Ubi-p63E-RB | 1849..2054 | 378..173 | 530 | 90.2 | Minus |
CG32744-PA | 1605 | CG32744-RA | 228..455 | 403..176 | 515 | 89 | Minus |
CG32744-PA | 1605 | CG32744-RA | 1368..1595 | 403..176 | 490 | 88.5 | Minus |
CG11624-PA | 2292 | Ubi-p63E-RA | 937..1142 | 378..173 | 480 | 89.3 | Minus |
CG11624-PA | 2292 | Ubi-p63E-RA | 1165..1370 | 378..173 | 480 | 89.3 | Minus |
CG11624-PA | 2292 | Ubi-p63E-RA | 1621..1826 | 378..173 | 480 | 89.3 | Minus |
CG11624-PA | 2292 | Ubi-p63E-RA | 2077..2267 | 378..188 | 480 | 90 | Minus |
CG11624-PA | 2292 | Ubi-p63E-RA | 481..686 | 378..173 | 480 | 89.3 | Minus |
CG11624-PC | 2292 | Ubi-p63E-RC | 937..1142 | 378..173 | 480 | 89.3 | Minus |
CG11624-PC | 2292 | Ubi-p63E-RC | 1165..1370 | 378..173 | 480 | 89.3 | Minus |
CG11624-PC | 2292 | Ubi-p63E-RC | 1621..1826 | 378..173 | 480 | 89.3 | Minus |
CG11624-PC | 2292 | Ubi-p63E-RC | 2077..2267 | 378..188 | 480 | 90 | Minus |
CG11624-PC | 2292 | Ubi-p63E-RC | 481..686 | 378..173 | 480 | 89.3 | Minus |
CG11624-PB | 2292 | Ubi-p63E-RB | 2077..2267 | 378..188 | 480 | 90 | Minus |
CG11624-PB | 2292 | Ubi-p63E-RB | 481..686 | 378..173 | 480 | 89.3 | Minus |
CG11624-PB | 2292 | Ubi-p63E-RB | 937..1142 | 378..173 | 480 | 89.3 | Minus |
CG11624-PB | 2292 | Ubi-p63E-RB | 1165..1370 | 378..173 | 480 | 89.3 | Minus |
CG11624-PB | 2292 | Ubi-p63E-RB | 1621..1826 | 378..173 | 480 | 89.3 | Minus |
CG32744-PA | 1605 | CG32744-RA | 456..665 | 403..194 | 475 | 89 | Minus |
CG32744-PA | 1605 | CG32744-RA | 684..893 | 403..194 | 475 | 89 | Minus |
CG32744-PA | 1605 | CG32744-RA | 1140..1349 | 403..194 | 475 | 89 | Minus |
CG32744-PA | 1605 | CG32744-RA | 19..227 | 384..176 | 470 | 88.9 | Minus |
CG32744-PA | 1605 | CG32744-RA | 912..1139 | 403..176 | 465 | 88.1 | Minus |
CG11624-PA | 2292 | Ubi-p63E-RA | 25..230 | 378..173 | 455 | 88.8 | Minus |
CG11624-PA | 2292 | Ubi-p63E-RA | 253..458 | 378..173 | 455 | 88.8 | Minus |
CG11624-PC | 2292 | Ubi-p63E-RC | 253..458 | 378..173 | 455 | 88.8 | Minus |
CG11624-PC | 2292 | Ubi-p63E-RC | 25..230 | 378..173 | 455 | 88.8 | Minus |
CG11624-PB | 2292 | Ubi-p63E-RB | 25..230 | 378..173 | 455 | 88.8 | Minus |
CG11624-PB | 2292 | Ubi-p63E-RB | 253..458 | 378..173 | 455 | 88.8 | Minus |
CG5271-PA | 471 | RpS27A-RA | 106..228 | 297..175 | 390 | 92.6 | Minus |
CG11700-PA | 906 | CG11700-RA | 553..683 | 306..176 | 255 | 87.7 | Minus |
CG11700-PA | 906 | CG11700-RA | 793..884 | 294..203 | 235 | 90.2 | Minus |
CG11700-PA | 906 | CG11700-RA | 228..331 | 403..300 | 195 | 87.5 | Minus |
CG11700-PA | 906 | CG11700-RA | 1..103 | 402..300 | 190 | 87.3 | Minus |
CG11700-PA | 906 | CG11700-RA | 456..512 | 403..347 | 185 | 92.9 | Minus |
CG11700-PA | 906 | CG11700-RA | 684..740 | 403..347 | 185 | 92.9 | Minus |
CG11700-PA | 906 | CG11700-RA | 388..422 | 243..209 | 150 | 97.1 | Minus |
CG11700-PA | 906 | CG11700-RA | 160..194 | 243..209 | 150 | 97.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 17:41:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL40-RB | 659 | CG2960-RB | 123..506 | 402..19 | 1920 | 100 | Minus |
RpL40-RA | 587 | CG2960-RA | 65..448 | 402..19 | 1920 | 100 | Minus |
Ubi-p63E-RD | 2624 | CG11624-RD | 808..1037 | 402..173 | 790 | 89.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 17:41:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4228025..4228408 | 402..19 | 1920 | 100 | Minus |
3L | 28110227 | 3L | 3899706..3899935 | 173..402 | 790 | 89.6 | Plus |
3L | 28110227 | 3L | 3900162..3900391 | 173..402 | 790 | 89.6 | Plus |
3L | 28110227 | 3L | 3900846..3901075 | 173..402 | 790 | 89.6 | Plus |
X | 23542271 | X | 6278294..6278521 | 176..403 | 765 | 89 | Plus |
3L | 28110227 | 3L | 3899934..3900163 | 173..402 | 760 | 88.7 | Plus |
3L | 28110227 | 3L | 3900390..3900619 | 173..402 | 760 | 88.7 | Plus |
3L | 28110227 | 3L | 3900618..3900847 | 173..402 | 760 | 88.7 | Plus |
3L | 28110227 | 3L | 3901074..3901303 | 173..402 | 760 | 88.7 | Plus |
3L | 28110227 | 3L | 3899477..3899707 | 172..402 | 750 | 88.3 | Plus |
3L | 28110227 | 3L | 3901302..3901531 | 173..402 | 745 | 88.3 | Plus |
3L | 28110227 | 3L | 3901530..3901759 | 173..402 | 730 | 87.8 | Plus |
2L | 23513712 | 2L | 10409731..10409958 | 402..175 | 705 | 87.3 | Minus |
Blast to na_te.dros performed on 2015-02-03 17:41:50 has no hits.
BO11934.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:00 Download gff for
BO11934.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL40-PA | 1..387 | 18..402 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:50:31 Download gff for
BO11934.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2960-PA | 1..387 | 18..402 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:37:05 Download gff for
BO11934.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL40-RA | 65..448 | 19..402 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 19:03:44 Download gff for
BO11934.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL40-RA | 65..448 | 19..402 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 19:03:44 Download gff for
BO11934.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4228025..4228408 | 19..402 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:37:05 Download gff for
BO11934.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4228025..4228408 | 19..402 | 100 | | Minus |
BO11934.5prime Sequence
416 bp (415 high quality bases) assembled on 2006-04-19
> BO11934.5prime
GAAGTTATCAGTCGACATGCAGATCTTCGTGAAAACCCTCACCGGCAAGA
CCATCACCTTGGAGGTGGAGCCTTCTGACACCATCGAGAATGTCAAGGCT
AAGATCCAGGATAAGGAGGGCATTCCCCCAGATCAGCAGCGTCTGATCTT
CGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAACATTC
AGAAGGAGTCCACCCTGCACTTGGTGCTCCGCCTGCGTGGTGGTATCATT
GAGCCCTCGCTCAGGATTCTGGCCCAGAAGTACAACTGCGACAAGATGAT
CTGCCGCAAGTGCTACGCCCGTCTGCATCCTCGTGCCACCAACTGCCGCA
AGAAGAAGTGCGGACACACCAACAACCTGCGCCCCAAGAAGAAGTTGAAG
GCAAGCTTTCTAGACC
BO11934.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2960-PA | 387 | RpL40-RA | 1..384 | 17..400 | 1920 | 100 | Plus |
CG11624-PA | 2292 | Ubi-p63E-RA | 709..914 | 41..246 | 530 | 90.2 | Plus |
CG11624-PA | 2292 | Ubi-p63E-RA | 1393..1598 | 41..246 | 530 | 90.2 | Plus |
CG11624-PA | 2292 | Ubi-p63E-RA | 1849..2054 | 41..246 | 530 | 90.2 | Plus |
CG11624-PC | 2292 | Ubi-p63E-RC | 709..914 | 41..246 | 530 | 90.2 | Plus |
CG11624-PC | 2292 | Ubi-p63E-RC | 1393..1598 | 41..246 | 530 | 90.2 | Plus |
CG11624-PC | 2292 | Ubi-p63E-RC | 1849..2054 | 41..246 | 530 | 90.2 | Plus |
CG11624-PB | 2292 | Ubi-p63E-RB | 709..914 | 41..246 | 530 | 90.2 | Plus |
CG11624-PB | 2292 | Ubi-p63E-RB | 1393..1598 | 41..246 | 530 | 90.2 | Plus |
CG11624-PB | 2292 | Ubi-p63E-RB | 1849..2054 | 41..246 | 530 | 90.2 | Plus |
CG32744-PA | 1605 | CG32744-RA | 228..455 | 16..243 | 515 | 89 | Plus |
CG32744-PA | 1605 | CG32744-RA | 1368..1595 | 16..243 | 490 | 88.5 | Plus |
CG11624-PA | 2292 | Ubi-p63E-RA | 2077..2267 | 41..231 | 480 | 90 | Plus |
CG11624-PA | 2292 | Ubi-p63E-RA | 481..686 | 41..246 | 480 | 89.3 | Plus |
CG11624-PA | 2292 | Ubi-p63E-RA | 937..1142 | 41..246 | 480 | 89.3 | Plus |
CG11624-PA | 2292 | Ubi-p63E-RA | 1165..1370 | 41..246 | 480 | 89.3 | Plus |
CG11624-PA | 2292 | Ubi-p63E-RA | 1621..1826 | 41..246 | 480 | 89.3 | Plus |
CG11624-PC | 2292 | Ubi-p63E-RC | 2077..2267 | 41..231 | 480 | 90 | Plus |
CG11624-PC | 2292 | Ubi-p63E-RC | 481..686 | 41..246 | 480 | 89.3 | Plus |
CG11624-PC | 2292 | Ubi-p63E-RC | 937..1142 | 41..246 | 480 | 89.3 | Plus |
CG11624-PC | 2292 | Ubi-p63E-RC | 1165..1370 | 41..246 | 480 | 89.3 | Plus |
CG11624-PC | 2292 | Ubi-p63E-RC | 1621..1826 | 41..246 | 480 | 89.3 | Plus |
CG11624-PB | 2292 | Ubi-p63E-RB | 2077..2267 | 41..231 | 480 | 90 | Plus |
CG11624-PB | 2292 | Ubi-p63E-RB | 481..686 | 41..246 | 480 | 89.3 | Plus |
CG11624-PB | 2292 | Ubi-p63E-RB | 937..1142 | 41..246 | 480 | 89.3 | Plus |
CG11624-PB | 2292 | Ubi-p63E-RB | 1165..1370 | 41..246 | 480 | 89.3 | Plus |
CG11624-PB | 2292 | Ubi-p63E-RB | 1621..1826 | 41..246 | 480 | 89.3 | Plus |
CG32744-PA | 1605 | CG32744-RA | 456..665 | 16..225 | 475 | 89 | Plus |
CG32744-PA | 1605 | CG32744-RA | 684..893 | 16..225 | 475 | 89 | Plus |
CG32744-PA | 1605 | CG32744-RA | 1140..1349 | 16..225 | 475 | 89 | Plus |
CG32744-PA | 1605 | CG32744-RA | 19..227 | 35..243 | 470 | 88.9 | Plus |
CG32744-PA | 1605 | CG32744-RA | 912..1139 | 16..243 | 465 | 88.1 | Plus |
CG11624-PA | 2292 | Ubi-p63E-RA | 25..230 | 41..246 | 455 | 88.8 | Plus |
CG11624-PA | 2292 | Ubi-p63E-RA | 253..458 | 41..246 | 455 | 88.8 | Plus |
CG11624-PC | 2292 | Ubi-p63E-RC | 25..230 | 41..246 | 455 | 88.8 | Plus |
CG11624-PC | 2292 | Ubi-p63E-RC | 253..458 | 41..246 | 455 | 88.8 | Plus |
CG11624-PB | 2292 | Ubi-p63E-RB | 25..230 | 41..246 | 455 | 88.8 | Plus |
CG11624-PB | 2292 | Ubi-p63E-RB | 253..458 | 41..246 | 455 | 88.8 | Plus |
CG5271-PA | 471 | RpS27A-RA | 106..228 | 122..244 | 390 | 92.6 | Plus |
CG11700-PA | 906 | CG11700-RA | 553..683 | 113..243 | 255 | 87.7 | Plus |
CG11700-PA | 906 | CG11700-RA | 793..884 | 125..216 | 235 | 90.2 | Plus |
CG11700-PA | 906 | CG11700-RA | 228..331 | 16..119 | 195 | 87.5 | Plus |
CG11700-PA | 906 | CG11700-RA | 1..103 | 17..119 | 190 | 87.3 | Plus |
CG11700-PA | 906 | CG11700-RA | 456..512 | 16..72 | 185 | 92.9 | Plus |
CG11700-PA | 906 | CG11700-RA | 684..740 | 16..72 | 185 | 92.9 | Plus |
CG11700-PA | 906 | CG11700-RA | 388..422 | 176..210 | 150 | 97.1 | Plus |
CG11700-PA | 906 | CG11700-RA | 160..194 | 176..210 | 150 | 97.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:39:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL40-RB | 659 | CG2960-RB | 123..506 | 17..400 | 1920 | 100 | Plus |
RpL40-RA | 587 | CG2960-RA | 65..448 | 17..400 | 1920 | 100 | Plus |
Ubi-p63E-RD | 2624 | CG11624-RD | 808..1037 | 17..246 | 790 | 89.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:38:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4228025..4228408 | 17..400 | 1920 | 100 | Plus |
3L | 28110227 | 3L | 3899706..3899935 | 246..17 | 790 | 89.6 | Minus |
3L | 28110227 | 3L | 3900162..3900391 | 246..17 | 790 | 89.6 | Minus |
3L | 28110227 | 3L | 3900846..3901075 | 246..17 | 790 | 89.6 | Minus |
X | 23542271 | X | 6278294..6278521 | 243..16 | 765 | 89 | Minus |
3L | 28110227 | 3L | 3900390..3900619 | 246..17 | 760 | 88.7 | Minus |
3L | 28110227 | 3L | 3900618..3900847 | 246..17 | 760 | 88.7 | Minus |
3L | 28110227 | 3L | 3901074..3901303 | 246..17 | 760 | 88.7 | Minus |
3L | 28110227 | 3L | 3899934..3900163 | 246..17 | 760 | 88.7 | Minus |
3L | 28110227 | 3L | 3899477..3899707 | 247..17 | 750 | 88.3 | Minus |
3L | 28110227 | 3L | 3901302..3901531 | 246..17 | 745 | 88.3 | Minus |
3L | 28110227 | 3L | 3901530..3901759 | 246..17 | 730 | 87.8 | Minus |
2L | 23513712 | 2L | 10409731..10409958 | 17..244 | 705 | 87.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:39:01 has no hits.
BO11934.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:01 Download gff for
BO11934.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL40-PA | 1..387 | 17..401 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:50:32 Download gff for
BO11934.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2960-PA | 1..387 | 17..401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 18:35:02 Download gff for
BO11934.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL40-RA | 65..448 | 17..400 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:32:41 Download gff for
BO11934.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL40-RA | 65..448 | 17..400 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:32:41 Download gff for
BO11934.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4228025..4228408 | 17..400 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 18:35:02 Download gff for
BO11934.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4228025..4228408 | 17..400 | 100 | | Plus |
BO11934.complete Sequence
418 bp assembled on 2006-10-11
GenBank Submission: FJ632250
> BO11934.complete
GAAGTTATCAGTCGACATGCAGATCTTCGTGAAAACCCTCACCGGCAAGA
CCATCACCTTGGAGGTGGAGCCTTCTGACACCATCGAGAATGTCAAGGCT
AAGATCCAGGATAAGGAGGGCATTCCCCCAGATCAGCAGCGTCTGATCTT
CGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAACATTC
AGAAGGAGTCCACCCTGCACTTGGTGCTCCGCCTGCGTGGTGGTATCATT
GAGCCCTCGCTCAGGATTCTGGCCCAGAAGTACAACTGCGACAAGATGAT
CTGCCGCAAGTGCTACGCCCGTCTGCATCCTCGTGCCACCAACTGCCGCA
AGAAGAAGTGCGGACACACCAACAACCTGCGCCCCAAGAAGAAGTTGAAG
GCAAGCTTTCTAGACCAT
BO11934.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:10:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL40-RB | 387 | CG2960-PB | 1..384 | 17..400 | 1920 | 100 | Plus |
RpL40-RA | 387 | CG2960-PA | 1..384 | 17..400 | 1920 | 100 | Plus |
Ubi-p63E-RD | 2292 | CG11624-PD | 685..914 | 17..246 | 790 | 89.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL40-RB | 659 | CG2960-RB | 123..506 | 17..400 | 1920 | 100 | Plus |
RpL40-RA | 587 | CG2960-RA | 65..448 | 17..400 | 1920 | 100 | Plus |
Ubi-p63E-RD | 2624 | CG11624-RD | 808..1037 | 17..246 | 790 | 89.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4228025..4228408 | 17..400 | 1920 | 100 | Plus |
3L | 28110227 | 3L | 3899706..3899935 | 246..17 | 790 | 89.6 | Minus |
3L | 28110227 | 3L | 3900162..3900391 | 246..17 | 790 | 89.6 | Minus |
3L | 28110227 | 3L | 3900846..3901075 | 246..17 | 790 | 89.6 | Minus |
X | 23542271 | X | 6278294..6278521 | 243..16 | 765 | 89 | Minus |
3L | 28110227 | 3L | 3899934..3900163 | 246..17 | 760 | 88.7 | Minus |
3L | 28110227 | 3L | 3900390..3900619 | 246..17 | 760 | 88.7 | Minus |
3L | 28110227 | 3L | 3900618..3900847 | 246..17 | 760 | 88.7 | Minus |
3L | 28110227 | 3L | 3901074..3901303 | 246..17 | 760 | 88.7 | Minus |
3L | 28110227 | 3L | 3899477..3899707 | 247..17 | 750 | 88.3 | Minus |
X | 23542271 | X | 6277154..6277381 | 243..16 | 750 | 88.6 | Minus |
3L | 28110227 | 3L | 3901302..3901531 | 246..17 | 745 | 88.3 | Minus |
X | 23542271 | X | 6277382..6277609 | 243..16 | 735 | 88.2 | Minus |
X | 23542271 | X | 6277610..6277837 | 243..16 | 735 | 88.2 | Minus |
X | 23542271 | X | 6277838..6278065 | 243..16 | 735 | 88.2 | Minus |
X | 23542271 | X | 6278066..6278293 | 243..16 | 735 | 88.2 | Minus |
3L | 28110227 | 3L | 3901530..3901759 | 246..17 | 730 | 87.8 | Minus |
X | 23542271 | X | 6278522..6278748 | 243..17 | 730 | 88.1 | Minus |
2L | 23513712 | 2L | 10409731..10409958 | 17..244 | 705 | 87.3 | Plus |
X | 23542271 | X | 6282501..6282728 | 243..16 | 660 | 86 | Minus |
X | 23542271 | X | 6282729..6282956 | 243..16 | 630 | 85.1 | Minus |
X | 23542271 | X | 6282957..6283184 | 243..16 | 630 | 85.1 | Minus |
X | 23542271 | X | 6282296..6282500 | 220..16 | 590 | 85.9 | Minus |
X | 23542271 | X | 6280764..6280882 | 135..17 | 250 | 80.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:10:23 has no hits.
BO11934.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 14:06:16 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed on 2008-11-11 05:21:38 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:41:04 Download gff for
BO11934.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL40-RA | 65..448 | 17..402 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 14:06:16 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:28 Download gff for
BO11934.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL40-RA | 65..448 | 17..402 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:28 Download gff for
BO11934.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4228025..4228408 | 17..402 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:04 Download gff for
BO11934.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4228025..4228408 | 17..402 | 99 | | Plus |
BO11934.pep Sequence
Translation from 16 to 418
> BO11934.pep
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL
EDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRILAQKYNCDKMICRKCY
ARLHPRATNCRKKKCGHTNNLRPKKKLKASFLDH
BO11934.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL40-PB | 128 | CG2960-PB | 1..128 | 1..128 | 670 | 100 | Plus |
RpL40-PA | 128 | CG2960-PA | 1..128 | 1..128 | 670 | 100 | Plus |
Ubi-p5E-PB | 534 | CG32744-PB | 457..534 | 1..78 | 384 | 98.7 | Plus |
Ubi-p5E-PA | 534 | CG32744-PA | 457..534 | 1..78 | 384 | 98.7 | Plus |
Ubi-p5E-PB | 534 | CG32744-PB | 1..77 | 1..77 | 382 | 98.7 | Plus |
Ubi-p5E-PB | 534 | CG32744-PB | 77..153 | 1..77 | 382 | 98.7 | Plus |
Ubi-p5E-PB | 534 | CG32744-PB | 153..229 | 1..77 | 382 | 98.7 | Plus |
Ubi-p5E-PB | 534 | CG32744-PB | 229..305 | 1..77 | 382 | 98.7 | Plus |
Ubi-p5E-PB | 534 | CG32744-PB | 305..381 | 1..77 | 382 | 98.7 | Plus |
Ubi-p5E-PB | 534 | CG32744-PB | 381..457 | 1..77 | 382 | 98.7 | Plus |
RpS27A-PA | 156 | CG5271-PA | 1..76 | 1..76 | 381 | 100 | Plus |