Clone BO11936 Report

Search the DGRC for BO11936

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:119
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCG34362-RA
Protein status:BO11936.pep: validated full length
Sequenced Size:1549

Clone Sequence Records

BO11936.3prime Sequence

893 bp (809 high quality bases) assembled on 2006-04-19

> BO11936.3prime
ATGGTCTAGAAAGCTTGCCTGTGCCTGCAAGAGTAGAGGATAAACCTGGG
GGCTCACTTGGAACTGCTGGATCGGATAGGCCACCACGCCGGCGGCCTGC
GGAATGGCGGTGCCGGCCACGCCCGTTGCCAGCTGCTGGGCAGGTGAGAT
CTGCGCCTGGGTGACGCCTTGCCAGGTGGCCGGAATCTGCACTCCCATGC
CCATGTATCCCTGCTGATATCCGCCGTACTGGCCGAAGTGATAGCCCTGT
ATGCCCTGCAGGAACTGGTTCTGCACGGCGGCTGCACTGGCCGCCGCTGG
GGTCACCGCTGCGGCGGTGGCCGAGGAAGCCGGGTAGGTGGGCGTGGGCG
AGTACCAGCAGCCCGTGGCGGCCAGCTGCTGTCCGTAGGCGGCGGCGGCA
GCAGCCGCGCCCACTCCATACGGGAAACCGGCGGCAGCAGCGGCGGCACT
GTTCAGGGCCTGGGTGGCGATGGTCTGCGCATTGTTGGGGTCACCACTCT
CCTTGCCCCACGAGCACTTCACCGGCTGGGCGTTGATCTCGGTGTTGTGT
ACGCCCACGATGGCGTGAGTGGCCGCCTCCTTGGTGGAGAAGCGCACGAA
AGCGTATCCCTTGTCCTTGAAGACGCGAATCTCCTGTATCGCGCCGTAGG
GGGCGAAGGTCTTCTGGAGGACCTCCTCGCTGAGGGCGGTGAGGGCGCTG
TTGACGCCGCCCACGTAAACGGTGCAATTGGAGGGACTGCTCTGATTGTA
GACCTCGTCGAAGGTCAACGGCTTGATGTTCTCTTTACTCGCCGGCGGTT
TCCGTGTGGCCCAATTCGTGCGAATTGAGCGGGAGCCAAGCCATTGGCCA
TTCATGGCCGTGATGGCGCTTTCGGCTTTCGATTTTCTGATGA

BO11936.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG12870-PA 1518 CG12870-RA 649..1515 885..19 4310 99.8 Minus
CG4787-PA 621 CG4787-RA 226..308 639..557 265 92.7 Minus
CG4787-PA 621 CG4787-RA 1..65 855..791 150 89.2 Minus
CG4787-PA 621 CG4787-RA 355..381 510..484 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG34362-RI 2729 CG34362-RI 1524..2398 893..19 4330 99.7 Minus
CG34362-RA 2495 CG34362-RA 1290..2164 893..19 4330 99.7 Minus
CG34362-RJ 2530 CG34362-RJ 1290..2139 893..44 4205 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:23:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28083229..28083622 593..200 1970 100 Minus
3R 32079331 3R 28082899..28083090 784..593 960 100 Minus
3R 32079331 3R 28084462..28084618 200..44 785 100 Minus
3R 32079331 3R 28078537..28078632 878..783 480 100 Minus
3R 32079331 3R 28235268..28235453 775..593 370 81.2 Minus
3R 32079331 3R 28237032..28237139 591..484 360 88.9 Minus
3R 32079331 3R 28235081..28235163 873..791 265 88 Minus
Blast to na_te.dros performed on 2015-02-11 11:24:00 has no hits.

BO11936.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:04 Download gff for BO11936.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12870-PA 642..1518 15..892 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:50:37 Download gff for BO11936.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12870-PA 642..1518 15..892 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:39:24 Download gff for BO11936.3prime
Subject Subject Range Query Range Percent Splice Strand
CG34362-RA 1291..2167 15..892 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:52:37 Download gff for BO11936.3prime
Subject Subject Range Query Range Percent Splice Strand
CG34362-RA 1291..2167 15..892 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:52:37 Download gff for BO11936.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 28078537..28078632 783..878 100 -> Minus
3R 28082901..28083090 593..782 100 -> Minus
3R 28083230..28083622 200..592 100 -> Minus
3R 28084463..28084616 46..199 100 -> Minus
3R 28085405..28085434 15..45 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:39:24 Download gff for BO11936.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23908623..23908812 593..782 100 -> Minus
arm_3R 23904259..23904354 783..878 100 -> Minus
arm_3R 23911127..23911156 15..45 93   Minus
arm_3R 23908952..23909344 200..592 100 -> Minus
arm_3R 23910185..23910338 46..199 100 -> Minus

BO11936.5prime Sequence

910 bp (812 high quality bases) assembled on 2006-04-19

> BO11936.5prime
GAAGTTATCAGTCGACATGTTGGCCATGCCCACGCTGATGATGCCAGCCA
CCGCCCAGATGACGCTCAGCGCCGCCCACGGAAAGCCCTACGAGACAAAG
CTGCTGGCCATCCACCAGACGCACCTCCAGCAGCAGCAGCAGCAACAGGC
ACCCGCTCCACCGCAGCAGCAGCAGCAGGTGCAGCAGTCGCAGCAGCAGG
CACCCAACGGCAAGCAGCAGTCGCAGCAGATGACCATTGTCACCACCCAG
CAGCAGCAGCAACAGCAGCATCCCCAGTCGCAGTCGCCGCACCAGCAGCA
GCAGTCGCAGCAGCAGGCCGCCGCAGCAGCCGCCGCTGCAGCCGCAGCAG
CCCACCATCAGCAGCAGCAGGCGGTGGCCGCAGCAGTCTGTGCTGCCCAG
CAGCAGGCGGTGGTGGTGCAGCAGCAGCAGCAGCAGCAGTACCAGATCCA
CTCGCAGCAGCAGTCGCCGCAGCAGCAGCAGGTGCTCTGCATCTCGCCCA
AGCAGGAACAATTCCACATCTTTGTCGGCGACTTGAGCTCAGAAATTGAA
ACTCAGCAATTGCGCGAAGCATTCACACCATTCGGCGAAATCTCCGACTG
TCGCGTGGTGCGCGATCCACAAACCTTGAAGTCGAAGGGCTATGGCTTTG
TGTCCTTCATCAAGAAATCGGAAGCCGAAAGCGCCATCACGGCCATGAAT
GGCCAATGGCTTGGCTCCCGCTCAATTCGCACGAATTGGGCCACACGGAA
ACCGCCGGCGAGTAAAGAGAACATCAAGCCGTTGACCTTCGACGAGGTCT
ACAATCAGAGCAGTCCCTCCAATTGCACCGTTTACGTGGGCCGCGTCAAC
AGCGCCCTCACCGCCCTCAGCGAGGAGGTCCTCCAGAAGACCTTCGCCCC
CTACGGGGCG

BO11936.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG12870-PA 1518 CG12870-RA 1..890 17..906 4425 99.8 Plus
CG4787-PA 621 CG4787-RA 1..65 695..759 150 89.2 Plus
CG32970-PA 1377 CG32970-RA 828..854 244..270 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:54:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG34362-RF 7452 CG34362-RF 650..1543 17..910 4440 99.8 Plus
CG34362-RE 5991 CG34362-RE 650..1543 17..910 4440 99.8 Plus
CG34362-RJ 2530 CG34362-RJ 650..1543 17..910 4440 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:54:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28049817..28050306 17..506 2450 100 Plus
3R 32079331 3R 28082899..28083043 766..910 695 98.6 Plus
3R 32079331 3R 28078535..28078632 670..767 490 100 Plus
3R 32079331 3R 28075676..28075764 506..594 445 100 Plus
3R 32079331 3R 28078161..28078237 595..671 385 100 Plus
3R 32079331 3R 28235074..28235163 670..759 270 86.7 Plus
3R 32079331 3R 28235268..28235390 775..894 205 79.7 Plus
Blast to na_te.dros performed on 2015-02-13 01:54:06 has no hits.

BO11936.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:05 Download gff for BO11936.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12870-PA 1..894 17..910 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:50:38 Download gff for BO11936.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12870-PA 1..894 17..910 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 12:08:24 Download gff for BO11936.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34362-RA 640..1543 9..910 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:19:19 Download gff for BO11936.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34362-RJ 640..1543 9..910 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:19:19 Download gff for BO11936.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 28049807..28050306 9..506 99 -> Plus
3R 28075677..28075764 507..594 100 -> Plus
3R 28078161..28078236 595..670 100 -> Plus
3R 28078536..28078632 671..767 100 -> Plus
3R 28082901..28083043 768..910 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 12:08:24 Download gff for BO11936.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23908623..23908765 768..910 98   Plus
arm_3R 23875529..23876028 9..506 99 -> Plus
arm_3R 23901399..23901486 507..594 100 -> Plus
arm_3R 23903883..23903958 595..670 100 -> Plus
arm_3R 23904258..23904354 671..767 100 -> Plus

BO11936.complete Sequence

1549 bp assembled on 2006-10-11

GenBank Submission: FJ632251

> BO11936.complete
GAAGTTATCAGTCGACATGTTGGCCATGCCCACGCTGATGATGCCAGCCA
CCGCCCAGATGACGCTCAGCGCCGCCCACGGAAAGCCCTACGAGACAAAG
CTGCTGGCCATCCACCAGACGCACCTCCAGCAGCAGCAGCAGCAACAGGC
ACCCGCTCCACCGCAGCAGCAGCAGCAGGTGCAGCAGTCGCAGCAGCAGG
CACCCAACGGCAAGCAGCAGTCGCAGCAGATGACCATTGTCACCACCCAG
CAGCAGCAGCAACAGCAGCATCCCCAGTCGCAGTCGCCGCACCAGCAGCA
GCAGTCGCAGCAGCAGGCCGCCGCAGCAGCCGCCGCTGCAGCCGCAGCAG
CCCACCATCAGCAGCAGCAGGCGGTGGCCGCAGCAGTCTGTGCTGCCCAG
CAGCAGGCGGTGGTGGTGCAGCAGCAGCAGCAGCAGCAGTACCAGATCCA
CTCGCAGCAGCAGTCGCCGCAGCAGCAGCAGGTGCTCTGCATCTCGCCCA
AGCAGGAACAATTCCACATCTTTGTCGGCGACTTGAGCTCAGAAATTGAA
ACTCAGCAATTGCGCGAAGCATTCACACCATTCGGCGAAATCTCCGACTG
TCGCGTGGTGCGCGATCCACAAACCTTGAAGTCGAAGGGCTATGGCTTTG
TGTCCTTCATCAAGAAATCGGAAGCCGAAAGCGCCATCACGGCCATGAAT
GGCCAATGGCTTGGCTCCCGCTCAATTCGCACGAATTGGGCCACACGGAA
ACCGCCGGCGAGTAAAGAGAACATCAAGCCGTTGACCTTCGACGAGGTCT
ACAATCAGAGCAGTCCCTCCAATTGCACCGTTTACGTGGGCGGCGTCAAC
AGCGCCCTCACCGCCCTCAGCGAGGAGGTCCTCCAGAAGACCTTCGCCCC
CTACGGCGCGATACAGGAGATTCGCGTCTTCAAGGACAAGGGATACGCTT
TCGTGCGCTTCTCCACCAAGGAGGCGGCCACTCACGCCATCGTGGGCGTA
CACAACACCGAGATCAACGCCCAGCCGGTGAAGTGCTCGTGGGGCAAGGA
GAGTGGTGACCCCAACAATGCGCAGACCATCGCCACCCAGGCCCTGAACA
GTGCCGCCGCTGCTGCCGCCGGTTTCCCGTATGGAGTGGGCGCGGCTGCT
GCCGCCGCCGCCTACGGACAGCAGCTGGCCGCCACGGGCTGCTGGTACTC
GCCCACGCCCACCTACCCGGCTTCCTCGGCCACCGCCGCAGCGGTGACCC
CAGCGGCGGCCAGTGCAGCCGCCGTGCAGAACCAGTTCCTGCAGGGCATA
CAGGGCTATCACTTCGGCCAGTACGGCGGATATCAGCAGGGATACATGGG
CATGGGAGTGCAGATTCCGGCCACCTGGCAAGGCGTCACCCAGGCGCAGA
TCTCACCTGCCCAGCAGCTGGCAACGGGCGTGGCCGGCACCGCCATTCCG
CAGGCCGCCGGCGTGGTGGCCTATCCGATCCAGCAGTTCCAAGTGAGCCC
CCAGGTTTATCCTCTACTCTTGCAGGCACAGGCAAGCTTTCTAGACCAT

BO11936.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:20:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG34362-RA 1518 CG34362-PA 1..1515 17..1531 7575 100 Plus
CG34362-RJ 1527 CG34362-PJ 1..1490 17..1506 7450 100 Plus
CG34362-RF 1497 CG34362-PF 1..1489 17..1505 7445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:20:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG34362-RA 2495 CG34362-RA 650..2164 17..1531 7575 100 Plus
CG34362-RJ 2530 CG34362-RJ 650..2139 17..1506 7450 100 Plus
CG34362-RF 7452 CG34362-RF 650..2138 17..1505 7445 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28049817..28050306 17..506 2450 100 Plus
3R 32079331 3R 28083229..28083622 957..1350 1970 100 Plus
3R 32079331 3R 28082899..28083090 766..957 960 100 Plus
3R 32079331 3R 28084462..28084618 1350..1506 785 100 Plus
3R 32079331 3R 28078535..28078632 670..767 490 100 Plus
3R 32079331 3R 28075676..28075764 506..594 445 100 Plus
3R 32079331 3R 28078161..28078237 595..671 385 100 Plus
3R 32079331 3R 28235268..28235453 775..957 370 81.2 Plus
3R 32079331 3R 28237032..28237139 959..1066 360 88.9 Plus
3R 32079331 3R 28235074..28235163 670..759 270 86.7 Plus
Blast to na_te.dros performed on 2014-11-27 13:20:21 has no hits.

BO11936.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:54 Download gff for BO11936.complete
Subject Subject Range Query Range Percent Splice Strand
CG34362-RA 1..1518 17..1535 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:52:07 Download gff for BO11936.complete
Subject Subject Range Query Range Percent Splice Strand
CG34362-RA 652..2161 22..1533 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:56 Download gff for BO11936.complete
Subject Subject Range Query Range Percent Splice Strand
CG34362-RA 655..2164 22..1533 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:55 Download gff for BO11936.complete
Subject Subject Range Query Range Percent Splice Strand
CG34362-RA 637..2164 9..1535 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:10 Download gff for BO11936.complete
Subject Subject Range Query Range Percent Splice Strand
CG34362-RA 655..2164 22..1533 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:10 Download gff for BO11936.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28049822..28050306 22..506 100 -> Plus
3R 28075677..28075764 507..594 100 -> Plus
3R 28078161..28078236 595..670 100 -> Plus
3R 28078536..28078632 671..767 100 -> Plus
3R 28082901..28083090 768..957 100 -> Plus
3R 28083230..28083622 958..1350 100 -> Plus
3R 28084463..28084616 1351..1504 100 -> Plus
3R 28085405..28085431 1505..1533 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:56 Download gff for BO11936.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23901399..23901486 507..594 100 -> Plus
arm_3R 23903883..23903958 595..670 100 -> Plus
arm_3R 23904258..23904354 671..767 100 -> Plus
arm_3R 23875544..23876028 22..506 100 -> Plus
arm_3R 23908623..23908812 768..957 100 -> Plus
arm_3R 23908952..23909344 958..1350 100 -> Plus
arm_3R 23910185..23910338 1351..1504 100 -> Plus
arm_3R 23911127..23911153 1505..1533 93   Plus

BO11936.pep Sequence

Translation from 16 to 1549

> BO11936.pep
MLAMPTLMMPATAQMTLSAAHGKPYETKLLAIHQTHLQQQQQQQAPAPPQ
QQQQVQQSQQQAPNGKQQSQQMTIVTTQQQQQQQHPQSQSPHQQQQSQQQ
AAAAAAAAAAAAHHQQQQAVAAAVCAAQQQAVVVQQQQQQQYQIHSQQQS
PQQQQVLCISPKQEQFHIFVGDLSSEIETQQLREAFTPFGEISDCRVVRD
PQTLKSKGYGFVSFIKKSEAESAITAMNGQWLGSRSIRTNWATRKPPASK
ENIKPLTFDEVYNQSSPSNCTVYVGGVNSALTALSEEVLQKTFAPYGAIQ
EIRVFKDKGYAFVRFSTKEAATHAIVGVHNTEINAQPVKCSWGKESGDPN
NAQTIATQALNSAAAAAAGFPYGVGAAAAAAAYGQQLAATGCWYSPTPTY
PASSATAAAVTPAAASAAAVQNQFLQGIQGYHFGQYGGYQQGYMGMGVQI
PATWQGVTQAQISPAQQLATGVAGTAIPQAAGVVAYPIQQFQVSPQVYPL
LLQAQASFLDH

BO11936.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG34362-PA 505 CG34362-PA 1..505 1..505 2586 100 Plus
CG34362-PJ 508 CG34362-PJ 1..497 1..497 2546 100 Plus
CG34362-PE 509 CG34362-PE 1..497 1..497 2543 99.8 Plus
CG34362-PF 498 CG34362-PF 1..496 1..496 2542 100 Plus
CG34362-PI 651 CG34362-PI 141..651 29..505 1780 72.4 Plus