Clone Sequence Records
BO11936.3prime Sequence
893 bp (809 high quality bases) assembled on 2006-04-19
> BO11936.3prime
ATGGTCTAGAAAGCTTGCCTGTGCCTGCAAGAGTAGAGGATAAACCTGGG
GGCTCACTTGGAACTGCTGGATCGGATAGGCCACCACGCCGGCGGCCTGC
GGAATGGCGGTGCCGGCCACGCCCGTTGCCAGCTGCTGGGCAGGTGAGAT
CTGCGCCTGGGTGACGCCTTGCCAGGTGGCCGGAATCTGCACTCCCATGC
CCATGTATCCCTGCTGATATCCGCCGTACTGGCCGAAGTGATAGCCCTGT
ATGCCCTGCAGGAACTGGTTCTGCACGGCGGCTGCACTGGCCGCCGCTGG
GGTCACCGCTGCGGCGGTGGCCGAGGAAGCCGGGTAGGTGGGCGTGGGCG
AGTACCAGCAGCCCGTGGCGGCCAGCTGCTGTCCGTAGGCGGCGGCGGCA
GCAGCCGCGCCCACTCCATACGGGAAACCGGCGGCAGCAGCGGCGGCACT
GTTCAGGGCCTGGGTGGCGATGGTCTGCGCATTGTTGGGGTCACCACTCT
CCTTGCCCCACGAGCACTTCACCGGCTGGGCGTTGATCTCGGTGTTGTGT
ACGCCCACGATGGCGTGAGTGGCCGCCTCCTTGGTGGAGAAGCGCACGAA
AGCGTATCCCTTGTCCTTGAAGACGCGAATCTCCTGTATCGCGCCGTAGG
GGGCGAAGGTCTTCTGGAGGACCTCCTCGCTGAGGGCGGTGAGGGCGCTG
TTGACGCCGCCCACGTAAACGGTGCAATTGGAGGGACTGCTCTGATTGTA
GACCTCGTCGAAGGTCAACGGCTTGATGTTCTCTTTACTCGCCGGCGGTT
TCCGTGTGGCCCAATTCGTGCGAATTGAGCGGGAGCCAAGCCATTGGCCA
TTCATGGCCGTGATGGCGCTTTCGGCTTTCGATTTTCTGATGA
BO11936.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12870-PA | 1518 | CG12870-RA | 649..1515 | 885..19 | 4310 | 99.8 | Minus |
CG4787-PA | 621 | CG4787-RA | 226..308 | 639..557 | 265 | 92.7 | Minus |
CG4787-PA | 621 | CG4787-RA | 1..65 | 855..791 | 150 | 89.2 | Minus |
CG4787-PA | 621 | CG4787-RA | 355..381 | 510..484 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:24:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34362-RI | 2729 | CG34362-RI | 1524..2398 | 893..19 | 4330 | 99.7 | Minus |
CG34362-RA | 2495 | CG34362-RA | 1290..2164 | 893..19 | 4330 | 99.7 | Minus |
CG34362-RJ | 2530 | CG34362-RJ | 1290..2139 | 893..44 | 4205 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:23:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28083229..28083622 | 593..200 | 1970 | 100 | Minus |
3R | 32079331 | 3R | 28082899..28083090 | 784..593 | 960 | 100 | Minus |
3R | 32079331 | 3R | 28084462..28084618 | 200..44 | 785 | 100 | Minus |
3R | 32079331 | 3R | 28078537..28078632 | 878..783 | 480 | 100 | Minus |
3R | 32079331 | 3R | 28235268..28235453 | 775..593 | 370 | 81.2 | Minus |
3R | 32079331 | 3R | 28237032..28237139 | 591..484 | 360 | 88.9 | Minus |
3R | 32079331 | 3R | 28235081..28235163 | 873..791 | 265 | 88 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:24:00 has no hits.
BO11936.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:04 Download gff for
BO11936.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12870-PA | 642..1518 | 15..892 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:50:37 Download gff for
BO11936.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12870-PA | 642..1518 | 15..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:39:24 Download gff for
BO11936.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34362-RA | 1291..2167 | 15..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:52:37 Download gff for
BO11936.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34362-RA | 1291..2167 | 15..892 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:52:37 Download gff for
BO11936.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28078537..28078632 | 783..878 | 100 | -> | Minus |
3R | 28082901..28083090 | 593..782 | 100 | -> | Minus |
3R | 28083230..28083622 | 200..592 | 100 | -> | Minus |
3R | 28084463..28084616 | 46..199 | 100 | -> | Minus |
3R | 28085405..28085434 | 15..45 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:39:24 Download gff for
BO11936.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23908623..23908812 | 593..782 | 100 | -> | Minus |
arm_3R | 23904259..23904354 | 783..878 | 100 | -> | Minus |
arm_3R | 23911127..23911156 | 15..45 | 93 | | Minus |
arm_3R | 23908952..23909344 | 200..592 | 100 | -> | Minus |
arm_3R | 23910185..23910338 | 46..199 | 100 | -> | Minus |
BO11936.5prime Sequence
910 bp (812 high quality bases) assembled on 2006-04-19
> BO11936.5prime
GAAGTTATCAGTCGACATGTTGGCCATGCCCACGCTGATGATGCCAGCCA
CCGCCCAGATGACGCTCAGCGCCGCCCACGGAAAGCCCTACGAGACAAAG
CTGCTGGCCATCCACCAGACGCACCTCCAGCAGCAGCAGCAGCAACAGGC
ACCCGCTCCACCGCAGCAGCAGCAGCAGGTGCAGCAGTCGCAGCAGCAGG
CACCCAACGGCAAGCAGCAGTCGCAGCAGATGACCATTGTCACCACCCAG
CAGCAGCAGCAACAGCAGCATCCCCAGTCGCAGTCGCCGCACCAGCAGCA
GCAGTCGCAGCAGCAGGCCGCCGCAGCAGCCGCCGCTGCAGCCGCAGCAG
CCCACCATCAGCAGCAGCAGGCGGTGGCCGCAGCAGTCTGTGCTGCCCAG
CAGCAGGCGGTGGTGGTGCAGCAGCAGCAGCAGCAGCAGTACCAGATCCA
CTCGCAGCAGCAGTCGCCGCAGCAGCAGCAGGTGCTCTGCATCTCGCCCA
AGCAGGAACAATTCCACATCTTTGTCGGCGACTTGAGCTCAGAAATTGAA
ACTCAGCAATTGCGCGAAGCATTCACACCATTCGGCGAAATCTCCGACTG
TCGCGTGGTGCGCGATCCACAAACCTTGAAGTCGAAGGGCTATGGCTTTG
TGTCCTTCATCAAGAAATCGGAAGCCGAAAGCGCCATCACGGCCATGAAT
GGCCAATGGCTTGGCTCCCGCTCAATTCGCACGAATTGGGCCACACGGAA
ACCGCCGGCGAGTAAAGAGAACATCAAGCCGTTGACCTTCGACGAGGTCT
ACAATCAGAGCAGTCCCTCCAATTGCACCGTTTACGTGGGCCGCGTCAAC
AGCGCCCTCACCGCCCTCAGCGAGGAGGTCCTCCAGAAGACCTTCGCCCC
CTACGGGGCG
BO11936.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12870-PA | 1518 | CG12870-RA | 1..890 | 17..906 | 4425 | 99.8 | Plus |
CG4787-PA | 621 | CG4787-RA | 1..65 | 695..759 | 150 | 89.2 | Plus |
CG32970-PA | 1377 | CG32970-RA | 828..854 | 244..270 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:54:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34362-RF | 7452 | CG34362-RF | 650..1543 | 17..910 | 4440 | 99.8 | Plus |
CG34362-RE | 5991 | CG34362-RE | 650..1543 | 17..910 | 4440 | 99.8 | Plus |
CG34362-RJ | 2530 | CG34362-RJ | 650..1543 | 17..910 | 4440 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:54:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28049817..28050306 | 17..506 | 2450 | 100 | Plus |
3R | 32079331 | 3R | 28082899..28083043 | 766..910 | 695 | 98.6 | Plus |
3R | 32079331 | 3R | 28078535..28078632 | 670..767 | 490 | 100 | Plus |
3R | 32079331 | 3R | 28075676..28075764 | 506..594 | 445 | 100 | Plus |
3R | 32079331 | 3R | 28078161..28078237 | 595..671 | 385 | 100 | Plus |
3R | 32079331 | 3R | 28235074..28235163 | 670..759 | 270 | 86.7 | Plus |
3R | 32079331 | 3R | 28235268..28235390 | 775..894 | 205 | 79.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:54:06 has no hits.
BO11936.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:05 Download gff for
BO11936.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12870-PA | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:50:38 Download gff for
BO11936.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12870-PA | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 12:08:24 Download gff for
BO11936.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34362-RA | 640..1543 | 9..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:19:19 Download gff for
BO11936.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34362-RJ | 640..1543 | 9..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:19:19 Download gff for
BO11936.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28049807..28050306 | 9..506 | 99 | -> | Plus |
3R | 28075677..28075764 | 507..594 | 100 | -> | Plus |
3R | 28078161..28078236 | 595..670 | 100 | -> | Plus |
3R | 28078536..28078632 | 671..767 | 100 | -> | Plus |
3R | 28082901..28083043 | 768..910 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 12:08:24 Download gff for
BO11936.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23908623..23908765 | 768..910 | 98 | | Plus |
arm_3R | 23875529..23876028 | 9..506 | 99 | -> | Plus |
arm_3R | 23901399..23901486 | 507..594 | 100 | -> | Plus |
arm_3R | 23903883..23903958 | 595..670 | 100 | -> | Plus |
arm_3R | 23904258..23904354 | 671..767 | 100 | -> | Plus |
BO11936.complete Sequence
1549 bp assembled on 2006-10-11
GenBank Submission: FJ632251
> BO11936.complete
GAAGTTATCAGTCGACATGTTGGCCATGCCCACGCTGATGATGCCAGCCA
CCGCCCAGATGACGCTCAGCGCCGCCCACGGAAAGCCCTACGAGACAAAG
CTGCTGGCCATCCACCAGACGCACCTCCAGCAGCAGCAGCAGCAACAGGC
ACCCGCTCCACCGCAGCAGCAGCAGCAGGTGCAGCAGTCGCAGCAGCAGG
CACCCAACGGCAAGCAGCAGTCGCAGCAGATGACCATTGTCACCACCCAG
CAGCAGCAGCAACAGCAGCATCCCCAGTCGCAGTCGCCGCACCAGCAGCA
GCAGTCGCAGCAGCAGGCCGCCGCAGCAGCCGCCGCTGCAGCCGCAGCAG
CCCACCATCAGCAGCAGCAGGCGGTGGCCGCAGCAGTCTGTGCTGCCCAG
CAGCAGGCGGTGGTGGTGCAGCAGCAGCAGCAGCAGCAGTACCAGATCCA
CTCGCAGCAGCAGTCGCCGCAGCAGCAGCAGGTGCTCTGCATCTCGCCCA
AGCAGGAACAATTCCACATCTTTGTCGGCGACTTGAGCTCAGAAATTGAA
ACTCAGCAATTGCGCGAAGCATTCACACCATTCGGCGAAATCTCCGACTG
TCGCGTGGTGCGCGATCCACAAACCTTGAAGTCGAAGGGCTATGGCTTTG
TGTCCTTCATCAAGAAATCGGAAGCCGAAAGCGCCATCACGGCCATGAAT
GGCCAATGGCTTGGCTCCCGCTCAATTCGCACGAATTGGGCCACACGGAA
ACCGCCGGCGAGTAAAGAGAACATCAAGCCGTTGACCTTCGACGAGGTCT
ACAATCAGAGCAGTCCCTCCAATTGCACCGTTTACGTGGGCGGCGTCAAC
AGCGCCCTCACCGCCCTCAGCGAGGAGGTCCTCCAGAAGACCTTCGCCCC
CTACGGCGCGATACAGGAGATTCGCGTCTTCAAGGACAAGGGATACGCTT
TCGTGCGCTTCTCCACCAAGGAGGCGGCCACTCACGCCATCGTGGGCGTA
CACAACACCGAGATCAACGCCCAGCCGGTGAAGTGCTCGTGGGGCAAGGA
GAGTGGTGACCCCAACAATGCGCAGACCATCGCCACCCAGGCCCTGAACA
GTGCCGCCGCTGCTGCCGCCGGTTTCCCGTATGGAGTGGGCGCGGCTGCT
GCCGCCGCCGCCTACGGACAGCAGCTGGCCGCCACGGGCTGCTGGTACTC
GCCCACGCCCACCTACCCGGCTTCCTCGGCCACCGCCGCAGCGGTGACCC
CAGCGGCGGCCAGTGCAGCCGCCGTGCAGAACCAGTTCCTGCAGGGCATA
CAGGGCTATCACTTCGGCCAGTACGGCGGATATCAGCAGGGATACATGGG
CATGGGAGTGCAGATTCCGGCCACCTGGCAAGGCGTCACCCAGGCGCAGA
TCTCACCTGCCCAGCAGCTGGCAACGGGCGTGGCCGGCACCGCCATTCCG
CAGGCCGCCGGCGTGGTGGCCTATCCGATCCAGCAGTTCCAAGTGAGCCC
CCAGGTTTATCCTCTACTCTTGCAGGCACAGGCAAGCTTTCTAGACCAT
BO11936.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:20:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34362-RA | 1518 | CG34362-PA | 1..1515 | 17..1531 | 7575 | 100 | Plus |
CG34362-RJ | 1527 | CG34362-PJ | 1..1490 | 17..1506 | 7450 | 100 | Plus |
CG34362-RF | 1497 | CG34362-PF | 1..1489 | 17..1505 | 7445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:20:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34362-RA | 2495 | CG34362-RA | 650..2164 | 17..1531 | 7575 | 100 | Plus |
CG34362-RJ | 2530 | CG34362-RJ | 650..2139 | 17..1506 | 7450 | 100 | Plus |
CG34362-RF | 7452 | CG34362-RF | 650..2138 | 17..1505 | 7445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:20:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28049817..28050306 | 17..506 | 2450 | 100 | Plus |
3R | 32079331 | 3R | 28083229..28083622 | 957..1350 | 1970 | 100 | Plus |
3R | 32079331 | 3R | 28082899..28083090 | 766..957 | 960 | 100 | Plus |
3R | 32079331 | 3R | 28084462..28084618 | 1350..1506 | 785 | 100 | Plus |
3R | 32079331 | 3R | 28078535..28078632 | 670..767 | 490 | 100 | Plus |
3R | 32079331 | 3R | 28075676..28075764 | 506..594 | 445 | 100 | Plus |
3R | 32079331 | 3R | 28078161..28078237 | 595..671 | 385 | 100 | Plus |
3R | 32079331 | 3R | 28235268..28235453 | 775..957 | 370 | 81.2 | Plus |
3R | 32079331 | 3R | 28237032..28237139 | 959..1066 | 360 | 88.9 | Plus |
3R | 32079331 | 3R | 28235074..28235163 | 670..759 | 270 | 86.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:20:21 has no hits.
BO11936.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:54 Download gff for
BO11936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34362-RA | 1..1518 | 17..1535 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:52:07 Download gff for
BO11936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34362-RA | 652..2161 | 22..1533 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:56 Download gff for
BO11936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34362-RA | 655..2164 | 22..1533 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:55 Download gff for
BO11936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34362-RA | 637..2164 | 9..1535 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:10 Download gff for
BO11936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34362-RA | 655..2164 | 22..1533 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:10 Download gff for
BO11936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28049822..28050306 | 22..506 | 100 | -> | Plus |
3R | 28075677..28075764 | 507..594 | 100 | -> | Plus |
3R | 28078161..28078236 | 595..670 | 100 | -> | Plus |
3R | 28078536..28078632 | 671..767 | 100 | -> | Plus |
3R | 28082901..28083090 | 768..957 | 100 | -> | Plus |
3R | 28083230..28083622 | 958..1350 | 100 | -> | Plus |
3R | 28084463..28084616 | 1351..1504 | 100 | -> | Plus |
3R | 28085405..28085431 | 1505..1533 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:56 Download gff for
BO11936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23901399..23901486 | 507..594 | 100 | -> | Plus |
arm_3R | 23903883..23903958 | 595..670 | 100 | -> | Plus |
arm_3R | 23904258..23904354 | 671..767 | 100 | -> | Plus |
arm_3R | 23875544..23876028 | 22..506 | 100 | -> | Plus |
arm_3R | 23908623..23908812 | 768..957 | 100 | -> | Plus |
arm_3R | 23908952..23909344 | 958..1350 | 100 | -> | Plus |
arm_3R | 23910185..23910338 | 1351..1504 | 100 | -> | Plus |
arm_3R | 23911127..23911153 | 1505..1533 | 93 | | Plus |
BO11936.pep Sequence
Translation from 16 to 1549
> BO11936.pep
MLAMPTLMMPATAQMTLSAAHGKPYETKLLAIHQTHLQQQQQQQAPAPPQ
QQQQVQQSQQQAPNGKQQSQQMTIVTTQQQQQQQHPQSQSPHQQQQSQQQ
AAAAAAAAAAAAHHQQQQAVAAAVCAAQQQAVVVQQQQQQQYQIHSQQQS
PQQQQVLCISPKQEQFHIFVGDLSSEIETQQLREAFTPFGEISDCRVVRD
PQTLKSKGYGFVSFIKKSEAESAITAMNGQWLGSRSIRTNWATRKPPASK
ENIKPLTFDEVYNQSSPSNCTVYVGGVNSALTALSEEVLQKTFAPYGAIQ
EIRVFKDKGYAFVRFSTKEAATHAIVGVHNTEINAQPVKCSWGKESGDPN
NAQTIATQALNSAAAAAAGFPYGVGAAAAAAAYGQQLAATGCWYSPTPTY
PASSATAAAVTPAAASAAAVQNQFLQGIQGYHFGQYGGYQQGYMGMGVQI
PATWQGVTQAQISPAQQLATGVAGTAIPQAAGVVAYPIQQFQVSPQVYPL
LLQAQASFLDH
BO11936.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:50:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34362-PA | 505 | CG34362-PA | 1..505 | 1..505 | 2586 | 100 | Plus |
CG34362-PJ | 508 | CG34362-PJ | 1..497 | 1..497 | 2546 | 100 | Plus |
CG34362-PE | 509 | CG34362-PE | 1..497 | 1..497 | 2543 | 99.8 | Plus |
CG34362-PF | 498 | CG34362-PF | 1..496 | 1..496 | 2542 | 100 | Plus |
CG34362-PI | 651 | CG34362-PI | 141..651 | 29..505 | 1780 | 72.4 | Plus |