Clone Sequence Records
BO11938.3prime Sequence
776 bp (732 high quality bases) assembled on 2006-04-19
> BO11938.3prime
ATGGTCTAGAAAGCTTGCGGCAGCTTCCTTTGCCAGGCGGTCAGCCTTTT
CTACAACTTCTTCGATTGGGCCGACCATGTAGAAAGCAACTTCAGGTAGA
TGGTCGTAGTCCCCAGCTAGAATTGCTGAGAAACCTTTTATAGTTTGCTC
CAGGGGCACTAGTTTACCAGCATGCCCGGTGAAGACTTCAGCAACTTGGA
ATGGCTGCGACAAGAAACGCTGAATCTTGCGAGCACGAGCGACTGTGAGC
TTATCTTCCTCAGACAACTCATCCATTCCGAGAATGGCTATTATATCCTG
AAGTGATTTGTAGTCTTGCAAGATTTTCTGCACACCACGGGCAACGTTAT
AGTGTTCTTGGCCAATGATGTTGGGATCCATGATTCGAGAAGTCGAATCC
AGTGGATCCACAGCAGGGTAAATACCCAGTTCGGCAATCGCACGCGAGAG
TACAGTGGTGGCATCCAAATGAGCGAATGTAGTAGCAGGAGCAGGATCGG
TCAAATCATCAGCGGGCACATATATGGCCTGAACAGAAGTAATGGATCCC
TTTTTGGTGGTGGTAATACGCTCCTGCATAGAACCCATGTCGGTAGCCAA
GGTTGGCTGGTAACCGACGGCTGAGGGAATACGACCCAACAAAGCGGACA
CTTCTGAGCCAGCTTGAGTAAATCGGAAAATGTTGTCGATAAACAGCAAC
ACATCCTGTCCTTCTTGATCACGGAAGTACTCTGCAACGGTCAGTCCAGT
TAGAGCAACACGGGCACGAGCACCTG
BO11938.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11154-PA | 1518 | ATPsyn-beta-RA | 758..1515 | 776..19 | 3790 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:37:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-beta-RC | 2026 | CG11154-RC | 1122..1879 | 776..19 | 3790 | 100 | Minus |
ATPsyn-beta-RD | 2048 | CG11154-RD | 784..1541 | 776..19 | 3790 | 100 | Minus |
ATPsyn-beta-RA | 1688 | CG11154-RA | 784..1541 | 776..19 | 3790 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:37:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 1033653..1034410 | 776..19 | 3790 | 100 | Minus |
3L | 28110227 | 3L | 16099086..16099709 | 771..148 | 795 | 75.2 | Minus |
Blast to na_te.dros performed 2015-02-10 22:37:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 627..694 | 520..453 | 115 | 63.2 | Minus |
BO11938.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:08 Download gff for
BO11938.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11154-PA | 758..1518 | 18..776 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:50:42 Download gff for
BO11938.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11154-PA | 758..1518 | 18..776 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:57:16 Download gff for
BO11938.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-beta-RA | 784..1541 | 19..776 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:43 Download gff for
BO11938.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-beta-RA | 784..1541 | 19..776 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:43 Download gff for
BO11938.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 1033653..1034410 | 19..776 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:57:16 Download gff for
BO11938.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 1054279..1055036 | 19..776 | 100 | | Minus |
BO11938.5prime Sequence
856 bp (835 high quality bases) assembled on 2006-04-19
> BO11938.5prime
GAAGTTATCAGTCGACATGTTCGCGTTACGTGCTGCATCTAAAGCCGATA
AGAATTTGCTGCCATTCTTGGGGCAATTGTCTCGTAGCCATGCTGCCAAG
GCTGCAAAGGCTGCAGCTGCCGCAAATGGAAAGATTGTGGCCGTAATTGG
TGCAGTCGTCGATGTCCAGTTTGATGATAACTTACCGCCCATTCTGAATG
CCTTGGAAGTAGACAACCGTTCTCCTCGGCTCGTGCTAGAGGTGGCCCAG
CACTTGGGAGAAAATACCGTGCGCACTATCGCCATGGATGGTACCGAAGG
CTTGGTTCGCGGACAGAAGGTTCTCGATACTGGGTATCCTATCCGAATTC
CAGTTGGTGCCGAAACACTAGGACGCATCATTAATGTTATTGGTGAACCC
ATTGATGAGCGTGGACCAATTGATACAGACAAGACCGCTGCCATTCATGC
TGAGGCTCCTGAATTCGTTCAGATGTCTGTTGAGCAAGAGATTCTTGTCA
CTGGAATCAAAGTCGTCGATCTCCTGGCTCCATACGCCAAAGGTGGTAAA
ATTGGGTTGTTTGGAGGTGCCGGTGTGGGCAAAACTGTGTTGATCATGGA
GCTCATTAACAACGTGGCTAAAGCTCATGGTGGATACTCGGTTTTCGCGG
GAGTTGGTGAACGCACTCGTGAGGGAAACGATTTATACAATGAGATGATC
GAGGGTGGTGTTATTTCACTAAAGGACAAGACCTCAAAGGTGGCTCTCGT
ATATGGGCAAATGAACGAGCCGCCAGGTGCTCGTGCCCGTGTTGCTCTAA
CTGGACTGACCGTTGCAGAGTACTTCCGTGATCAAGAAGGACAGGATGTG
TTGCTG
BO11938.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11154-PA | 1518 | ATPsyn-beta-RA | 1..840 | 17..856 | 4200 | 100 | Plus |
CG11154-PB | 384 | ATPsyn-beta-RB | 1..378 | 17..394 | 1890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 05:29:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-beta-RD | 2048 | CG11154-RD | 27..866 | 17..856 | 4200 | 100 | Plus |
ATPsyn-beta-RA | 1688 | CG11154-RA | 27..866 | 17..856 | 4200 | 100 | Plus |
ATPsyn-beta-RC | 2026 | CG11154-RC | 347..1204 | 17..856 | 4010 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 05:29:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 1033271..1033735 | 392..856 | 2325 | 100 | Plus |
4 | 1348131 | 4 | 1032907..1033220 | 81..394 | 1570 | 100 | Plus |
3L | 28110227 | 3L | 16098790..16099162 | 483..855 | 410 | 74 | Plus |
4 | 1348131 | 4 | 1031890..1031953 | 17..80 | 320 | 100 | Plus |
3R | 32079331 | 3R | 19920789..19920871 | 630..712 | 205 | 83.1 | Plus |
Blast to na_te.dros performed on 2015-02-04 05:29:21 has no hits.
BO11938.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:09 Download gff for
BO11938.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11154-PA | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:50:43 Download gff for
BO11938.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11154-PA | 1..840 | 17..856 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:13:56 Download gff for
BO11938.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-beta-RA | 21..866 | 10..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:45:56 Download gff for
BO11938.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-beta-RA | 21..866 | 10..856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:45:56 Download gff for
BO11938.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 1031884..1031953 | 10..80 | 94 | -> | Plus |
4 | 1032907..1033218 | 81..392 | 100 | -> | Plus |
4 | 1033272..1033735 | 393..856 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:13:56 Download gff for
BO11938.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 1052510..1052579 | 10..80 | 94 | -> | Plus |
arm_4 | 1053533..1053844 | 81..392 | 100 | -> | Plus |
arm_4 | 1053898..1054361 | 393..856 | 100 | | Plus |
BO11938.complete Sequence
1549 bp assembled on 2006-12-18
GenBank Submission: FJ632252
> BO11938.complete
GAAGTTATCAGTCGACATGTTCGCGTTACGTGCTGCATCTAAAGCCGATA
AGAATTTGCTGCCATTCTTGGGGCAATTGTCTCGTAGCCATGCTGCCAAG
GCTGCAAAGGCTGCAGCTGCCGCAAATGGAAAGATTGTGGCCGTAATTGG
TGCAGTCGTCGATGTCCAGTTTGATGATAACTTACCGCCCATTCTGAATG
CCTTGGAAGTAGACAACCGTTCTCCTCGGCTCGTGCTAGAGGTGGCCCAG
CACTTGGGAGAAAATACCGTGCGCACTATCGCCATGGATGGTACCGAAGG
CTTGGTTCGCGGACAGAAGGTTCTCGATACTGGGTATCCTATCCGAATTC
CAGTTGGTGCCGAAACACTAGGACGCATCATTAATGTTATTGGTGAACCC
ATTGATGAGCGTGGACCAATTGATACAGACAAGACCGCTGCCATTCATGC
TGAGGCTCCTGAATTCGTTCAGATGTCTGTTGAGCAAGAGATTCTTGTCA
CTGGAATCAAAGTCGTCGATCTCCTGGCTCCATACGCCAAAGGTGGTAAA
ATTGGGTTGTTTGGAGGTGCCGGTGTGGGCAAAACTGTGTTGATCATGGA
GCTCATTAACAACGTGGCTAAAGCTCATGGTGGATACTCGGTTTTCGCGG
GAGTTGGTGAACGCACTCGTGAGGGAAACGATTTATACAATGAGATGATC
GAGGGTGGTGTTATTTCACTAAAGGACAAGACCTCAAAGGTGGCTCTCGT
ATATGGGCAAATGAACGAGCCGCCAGGTGCTCGTGCCCGTGTTGCTCTAA
CTGGACTGACCGTTGCAGAGTACTTCCGTGATCAAGAAGGACAGGATGTG
TTGCTGTTTATCGACAACATTTTCCGATTTACTCAAGCTGGCTCAGAAGT
GTCCGCTTTGTTGGGTCGTATTCCCTCAGCCGTCGGTTACCAGCCAACCT
TGGCTACCGACATGGGTTCTATGCAGGAGCGTATTACCACCACCAAAAAG
GGATCCATTACTTCTGTTCAGGCCATATATGTGCCCGCTGATGATTTGAC
CGATCCTGCTCCTGCTACTACATTCGCTCATTTGGATGCCACCACTGTAC
TCTCGCGTGCGATTGCCGAACTGGGTATTTACCCTGCTGTGGATCCACTG
GATTCGACTTCTCGAATCATGGATCCCAACATCATTGGCCAAGAACACTA
TAACGTTGCCCGTGGTGTGCAGAAAATCTTGCAAGACTACAAATCACTTC
AGGATATAATAGCCATTCTCGGAATGGATGAGTTGTCTGAGGAAGATAAG
CTCACAGTCGCTCGTGCTCGCAAGATTCAGCGTTTCTTGTCGCAGCCATT
CCAAGTTGCTGAAGTCTTCACCGGGCATGCTGGTAAACTAGTGCCCCTGG
AGCAAACTATAAAAGGTTTCTCAGCAATTCTAGCTGGGGACTACGACCAT
CTACCTGAAGTTGCTTTCTACATGGTCGGCCCAATCGAAGAAGTTGTAGA
AAAGGCTGACCGCCTGGCAAAGGAAGCTGCCGCAAGCTTTCTAGACCAT
BO11938.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:20:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-beta-RD | 1518 | CG11154-PD | 1..1515 | 17..1531 | 7575 | 100 | Plus |
ATPsyn-beta-RA | 1518 | CG11154-PA | 1..1515 | 17..1531 | 7575 | 100 | Plus |
ATPsyn-beta-RC | 1536 | CG11154-PC | 1..1533 | 17..1531 | 7360 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-beta-RD | 2048 | CG11154-RD | 27..1541 | 17..1531 | 7575 | 100 | Plus |
ATPsyn-beta-RA | 1688 | CG11154-RA | 27..1541 | 17..1531 | 7575 | 100 | Plus |
ATPsyn-beta-RC | 2026 | CG11154-RC | 347..1879 | 17..1531 | 7360 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 1033271..1034410 | 392..1531 | 5700 | 100 | Plus |
4 | 1348131 | 4 | 1032907..1033220 | 81..394 | 1570 | 100 | Plus |
3L | 28110227 | 3L | 16098790..16099709 | 483..1402 | 1120 | 74.8 | Plus |
4 | 1348131 | 4 | 1031890..1031953 | 17..80 | 320 | 100 | Plus |
3R | 32079331 | 3R | 19920789..19920871 | 630..712 | 205 | 83.1 | Plus |
Blast to na_te.dros performed 2014-11-28 01:20:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 627..694 | 1030..1097 | 115 | 63.2 | Plus |
BO11938.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:10 Download gff for
BO11938.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-beta-RA | 1..1518 | 17..1532 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:28:52 Download gff for
BO11938.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-beta-RA | 82..1591 | 22..1533 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:01 Download gff for
BO11938.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-beta-RA | 32..1541 | 22..1533 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:10 Download gff for
BO11938.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-beta-RA | 71..1591 | 10..1531 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:34 Download gff for
BO11938.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-beta-RA | 32..1541 | 22..1533 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:34 Download gff for
BO11938.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 1031895..1031953 | 22..80 | 100 | -> | Plus |
4 | 1032907..1033218 | 81..392 | 100 | -> | Plus |
4 | 1033272..1034410 | 393..1533 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:01 Download gff for
BO11938.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 1052521..1052579 | 22..80 | 100 | -> | Plus |
arm_4 | 1053533..1053844 | 81..392 | 100 | -> | Plus |
arm_4 | 1053898..1055036 | 393..1533 | 99 | | Plus |
BO11938.pep Sequence
Translation from 16 to 1549
> BO11938.pep
MFALRAASKADKNLLPFLGQLSRSHAAKAAKAAAAANGKIVAVIGAVVDV
QFDDNLPPILNALEVDNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQ
KVLDTGYPIRIPVGAETLGRIINVIGEPIDERGPIDTDKTAAIHAEAPEF
VQMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV
AKAHGGYSVFAGVGERTREGNDLYNEMIEGGVISLKDKTSKVALVYGQMN
EPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLG
RIPSAVGYQPTLATDMGSMQERITTTKKGSITSVQAIYVPADDLTDPAPA
TTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGQEHYNVARG
VQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEV
FTGHAGKLVPLEQTIKGFSAILAGDYDHLPEVAFYMVGPIEEVVEKADRL
AKEAAASFLDH
BO11938.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:37:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-beta-PD | 505 | CG11154-PD | 1..505 | 1..505 | 2520 | 100 | Plus |
ATPsyn-beta-PA | 505 | CG11154-PA | 1..505 | 1..505 | 2520 | 100 | Plus |
ATPsyn-beta-PC | 511 | CG11154-PC | 1..511 | 1..505 | 2503 | 98.8 | Plus |
ms(3)72Dt-PA | 622 | CG5389-PA | 104..568 | 38..501 | 1824 | 76.1 | Plus |
Vha68-3-PA | 743 | CG5075-PA | 349..644 | 160..443 | 297 | 29.4 | Plus |