Clone BO11938 Report

Search the DGRC for BO11938

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:119
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptATPsyn-beta-RA
Protein status:BO11938.pep:
Sequenced Size:1549

Clone Sequence Records

BO11938.3prime Sequence

776 bp (732 high quality bases) assembled on 2006-04-19

> BO11938.3prime
ATGGTCTAGAAAGCTTGCGGCAGCTTCCTTTGCCAGGCGGTCAGCCTTTT
CTACAACTTCTTCGATTGGGCCGACCATGTAGAAAGCAACTTCAGGTAGA
TGGTCGTAGTCCCCAGCTAGAATTGCTGAGAAACCTTTTATAGTTTGCTC
CAGGGGCACTAGTTTACCAGCATGCCCGGTGAAGACTTCAGCAACTTGGA
ATGGCTGCGACAAGAAACGCTGAATCTTGCGAGCACGAGCGACTGTGAGC
TTATCTTCCTCAGACAACTCATCCATTCCGAGAATGGCTATTATATCCTG
AAGTGATTTGTAGTCTTGCAAGATTTTCTGCACACCACGGGCAACGTTAT
AGTGTTCTTGGCCAATGATGTTGGGATCCATGATTCGAGAAGTCGAATCC
AGTGGATCCACAGCAGGGTAAATACCCAGTTCGGCAATCGCACGCGAGAG
TACAGTGGTGGCATCCAAATGAGCGAATGTAGTAGCAGGAGCAGGATCGG
TCAAATCATCAGCGGGCACATATATGGCCTGAACAGAAGTAATGGATCCC
TTTTTGGTGGTGGTAATACGCTCCTGCATAGAACCCATGTCGGTAGCCAA
GGTTGGCTGGTAACCGACGGCTGAGGGAATACGACCCAACAAAGCGGACA
CTTCTGAGCCAGCTTGAGTAAATCGGAAAATGTTGTCGATAAACAGCAAC
ACATCCTGTCCTTCTTGATCACGGAAGTACTCTGCAACGGTCAGTCCAGT
TAGAGCAACACGGGCACGAGCACCTG

BO11938.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG11154-PA 1518 ATPsyn-beta-RA 758..1515 776..19 3790 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:37:28
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-beta-RC 2026 CG11154-RC 1122..1879 776..19 3790 100 Minus
ATPsyn-beta-RD 2048 CG11154-RD 784..1541 776..19 3790 100 Minus
ATPsyn-beta-RA 1688 CG11154-RA 784..1541 776..19 3790 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 1033653..1034410 776..19 3790 100 Minus
3L 28110227 3L 16099086..16099709 771..148 795 75.2 Minus
Blast to na_te.dros performed 2015-02-10 22:37:25
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 627..694 520..453 115 63.2 Minus

BO11938.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:08 Download gff for BO11938.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11154-PA 758..1518 18..776 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:50:42 Download gff for BO11938.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11154-PA 758..1518 18..776 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:57:16 Download gff for BO11938.3prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-beta-RA 784..1541 19..776 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:43 Download gff for BO11938.3prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-beta-RA 784..1541 19..776 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:43 Download gff for BO11938.3prime
Subject Subject Range Query Range Percent Splice Strand
4 1033653..1034410 19..776 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:57:16 Download gff for BO11938.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 1054279..1055036 19..776 100   Minus

BO11938.5prime Sequence

856 bp (835 high quality bases) assembled on 2006-04-19

> BO11938.5prime
GAAGTTATCAGTCGACATGTTCGCGTTACGTGCTGCATCTAAAGCCGATA
AGAATTTGCTGCCATTCTTGGGGCAATTGTCTCGTAGCCATGCTGCCAAG
GCTGCAAAGGCTGCAGCTGCCGCAAATGGAAAGATTGTGGCCGTAATTGG
TGCAGTCGTCGATGTCCAGTTTGATGATAACTTACCGCCCATTCTGAATG
CCTTGGAAGTAGACAACCGTTCTCCTCGGCTCGTGCTAGAGGTGGCCCAG
CACTTGGGAGAAAATACCGTGCGCACTATCGCCATGGATGGTACCGAAGG
CTTGGTTCGCGGACAGAAGGTTCTCGATACTGGGTATCCTATCCGAATTC
CAGTTGGTGCCGAAACACTAGGACGCATCATTAATGTTATTGGTGAACCC
ATTGATGAGCGTGGACCAATTGATACAGACAAGACCGCTGCCATTCATGC
TGAGGCTCCTGAATTCGTTCAGATGTCTGTTGAGCAAGAGATTCTTGTCA
CTGGAATCAAAGTCGTCGATCTCCTGGCTCCATACGCCAAAGGTGGTAAA
ATTGGGTTGTTTGGAGGTGCCGGTGTGGGCAAAACTGTGTTGATCATGGA
GCTCATTAACAACGTGGCTAAAGCTCATGGTGGATACTCGGTTTTCGCGG
GAGTTGGTGAACGCACTCGTGAGGGAAACGATTTATACAATGAGATGATC
GAGGGTGGTGTTATTTCACTAAAGGACAAGACCTCAAAGGTGGCTCTCGT
ATATGGGCAAATGAACGAGCCGCCAGGTGCTCGTGCCCGTGTTGCTCTAA
CTGGACTGACCGTTGCAGAGTACTTCCGTGATCAAGAAGGACAGGATGTG
TTGCTG

BO11938.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG11154-PA 1518 ATPsyn-beta-RA 1..840 17..856 4200 100 Plus
CG11154-PB 384 ATPsyn-beta-RB 1..378 17..394 1890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 05:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-beta-RD 2048 CG11154-RD 27..866 17..856 4200 100 Plus
ATPsyn-beta-RA 1688 CG11154-RA 27..866 17..856 4200 100 Plus
ATPsyn-beta-RC 2026 CG11154-RC 347..1204 17..856 4010 97.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 05:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 1033271..1033735 392..856 2325 100 Plus
4 1348131 4 1032907..1033220 81..394 1570 100 Plus
3L 28110227 3L 16098790..16099162 483..855 410 74 Plus
4 1348131 4 1031890..1031953 17..80 320 100 Plus
3R 32079331 3R 19920789..19920871 630..712 205 83.1 Plus
Blast to na_te.dros performed on 2015-02-04 05:29:21 has no hits.

BO11938.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:09 Download gff for BO11938.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11154-PA 1..840 17..856 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:50:43 Download gff for BO11938.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11154-PA 1..840 17..856 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:13:56 Download gff for BO11938.5prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-beta-RA 21..866 10..856 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:45:56 Download gff for BO11938.5prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-beta-RA 21..866 10..856 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:45:56 Download gff for BO11938.5prime
Subject Subject Range Query Range Percent Splice Strand
4 1031884..1031953 10..80 94 -> Plus
4 1032907..1033218 81..392 100 -> Plus
4 1033272..1033735 393..856 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:13:56 Download gff for BO11938.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 1052510..1052579 10..80 94 -> Plus
arm_4 1053533..1053844 81..392 100 -> Plus
arm_4 1053898..1054361 393..856 100   Plus

BO11938.complete Sequence

1549 bp assembled on 2006-12-18

GenBank Submission: FJ632252

> BO11938.complete
GAAGTTATCAGTCGACATGTTCGCGTTACGTGCTGCATCTAAAGCCGATA
AGAATTTGCTGCCATTCTTGGGGCAATTGTCTCGTAGCCATGCTGCCAAG
GCTGCAAAGGCTGCAGCTGCCGCAAATGGAAAGATTGTGGCCGTAATTGG
TGCAGTCGTCGATGTCCAGTTTGATGATAACTTACCGCCCATTCTGAATG
CCTTGGAAGTAGACAACCGTTCTCCTCGGCTCGTGCTAGAGGTGGCCCAG
CACTTGGGAGAAAATACCGTGCGCACTATCGCCATGGATGGTACCGAAGG
CTTGGTTCGCGGACAGAAGGTTCTCGATACTGGGTATCCTATCCGAATTC
CAGTTGGTGCCGAAACACTAGGACGCATCATTAATGTTATTGGTGAACCC
ATTGATGAGCGTGGACCAATTGATACAGACAAGACCGCTGCCATTCATGC
TGAGGCTCCTGAATTCGTTCAGATGTCTGTTGAGCAAGAGATTCTTGTCA
CTGGAATCAAAGTCGTCGATCTCCTGGCTCCATACGCCAAAGGTGGTAAA
ATTGGGTTGTTTGGAGGTGCCGGTGTGGGCAAAACTGTGTTGATCATGGA
GCTCATTAACAACGTGGCTAAAGCTCATGGTGGATACTCGGTTTTCGCGG
GAGTTGGTGAACGCACTCGTGAGGGAAACGATTTATACAATGAGATGATC
GAGGGTGGTGTTATTTCACTAAAGGACAAGACCTCAAAGGTGGCTCTCGT
ATATGGGCAAATGAACGAGCCGCCAGGTGCTCGTGCCCGTGTTGCTCTAA
CTGGACTGACCGTTGCAGAGTACTTCCGTGATCAAGAAGGACAGGATGTG
TTGCTGTTTATCGACAACATTTTCCGATTTACTCAAGCTGGCTCAGAAGT
GTCCGCTTTGTTGGGTCGTATTCCCTCAGCCGTCGGTTACCAGCCAACCT
TGGCTACCGACATGGGTTCTATGCAGGAGCGTATTACCACCACCAAAAAG
GGATCCATTACTTCTGTTCAGGCCATATATGTGCCCGCTGATGATTTGAC
CGATCCTGCTCCTGCTACTACATTCGCTCATTTGGATGCCACCACTGTAC
TCTCGCGTGCGATTGCCGAACTGGGTATTTACCCTGCTGTGGATCCACTG
GATTCGACTTCTCGAATCATGGATCCCAACATCATTGGCCAAGAACACTA
TAACGTTGCCCGTGGTGTGCAGAAAATCTTGCAAGACTACAAATCACTTC
AGGATATAATAGCCATTCTCGGAATGGATGAGTTGTCTGAGGAAGATAAG
CTCACAGTCGCTCGTGCTCGCAAGATTCAGCGTTTCTTGTCGCAGCCATT
CCAAGTTGCTGAAGTCTTCACCGGGCATGCTGGTAAACTAGTGCCCCTGG
AGCAAACTATAAAAGGTTTCTCAGCAATTCTAGCTGGGGACTACGACCAT
CTACCTGAAGTTGCTTTCTACATGGTCGGCCCAATCGAAGAAGTTGTAGA
AAAGGCTGACCGCCTGGCAAAGGAAGCTGCCGCAAGCTTTCTAGACCAT

BO11938.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:20:50
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-beta-RD 1518 CG11154-PD 1..1515 17..1531 7575 100 Plus
ATPsyn-beta-RA 1518 CG11154-PA 1..1515 17..1531 7575 100 Plus
ATPsyn-beta-RC 1536 CG11154-PC 1..1533 17..1531 7360 98.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:50
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-beta-RD 2048 CG11154-RD 27..1541 17..1531 7575 100 Plus
ATPsyn-beta-RA 1688 CG11154-RA 27..1541 17..1531 7575 100 Plus
ATPsyn-beta-RC 2026 CG11154-RC 347..1879 17..1531 7360 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 1033271..1034410 392..1531 5700 100 Plus
4 1348131 4 1032907..1033220 81..394 1570 100 Plus
3L 28110227 3L 16098790..16099709 483..1402 1120 74.8 Plus
4 1348131 4 1031890..1031953 17..80 320 100 Plus
3R 32079331 3R 19920789..19920871 630..712 205 83.1 Plus
Blast to na_te.dros performed 2014-11-28 01:20:49
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 627..694 1030..1097 115 63.2 Plus

BO11938.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:10 Download gff for BO11938.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-beta-RA 1..1518 17..1532 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:28:52 Download gff for BO11938.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-beta-RA 82..1591 22..1533 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:01 Download gff for BO11938.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-beta-RA 32..1541 22..1533 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:10 Download gff for BO11938.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-beta-RA 71..1591 10..1531 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:34 Download gff for BO11938.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-beta-RA 32..1541 22..1533 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:34 Download gff for BO11938.complete
Subject Subject Range Query Range Percent Splice Strand
4 1031895..1031953 22..80 100 -> Plus
4 1032907..1033218 81..392 100 -> Plus
4 1033272..1034410 393..1533 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:01 Download gff for BO11938.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 1052521..1052579 22..80 100 -> Plus
arm_4 1053533..1053844 81..392 100 -> Plus
arm_4 1053898..1055036 393..1533 99   Plus

BO11938.pep Sequence

Translation from 16 to 1549

> BO11938.pep
MFALRAASKADKNLLPFLGQLSRSHAAKAAKAAAAANGKIVAVIGAVVDV
QFDDNLPPILNALEVDNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQ
KVLDTGYPIRIPVGAETLGRIINVIGEPIDERGPIDTDKTAAIHAEAPEF
VQMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV
AKAHGGYSVFAGVGERTREGNDLYNEMIEGGVISLKDKTSKVALVYGQMN
EPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLG
RIPSAVGYQPTLATDMGSMQERITTTKKGSITSVQAIYVPADDLTDPAPA
TTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGQEHYNVARG
VQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEV
FTGHAGKLVPLEQTIKGFSAILAGDYDHLPEVAFYMVGPIEEVVEKADRL
AKEAAASFLDH

BO11938.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:37:42
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-beta-PD 505 CG11154-PD 1..505 1..505 2520 100 Plus
ATPsyn-beta-PA 505 CG11154-PA 1..505 1..505 2520 100 Plus
ATPsyn-beta-PC 511 CG11154-PC 1..511 1..505 2503 98.8 Plus
ms(3)72Dt-PA 622 CG5389-PA 104..568 38..501 1824 76.1 Plus
Vha68-3-PA 743 CG5075-PA 349..644 160..443 297 29.4 Plus