Clone Sequence Records
BO11941.5prime Sequence
755 bp (754 high quality bases) assembled on 2006-04-19
> BO11941.5prime
GAAGTTATCAGTCGACATGTTCAGATTTCTTGCACTGACCACCTTGGTGG
CCCTGGCTTCCAGCCAGCACTATCACCAGGATCCCAAAACGGCGGCCATC
ATCAGTGAGCAGCGTTATCTGTCCGGAGATGGAAAGTTCGGAGCTGCCTA
TGAGCAGGAGGATGGCATCAACTTCAAGGAGGAGACGGATGCGGATGGAA
CACGTCATGGCAGCTACAGCTATCTGGATCCCACGGGCCAGAGGCGTACT
ATTTCGTACACAGCTGGCAAAAATGGTTTCCAAGCTTCTGGAGATCACTT
GCCCCAGGCACCACCTGCTCCACCACAGCCCGTGCCCACAGCGGGATATC
AGCCACAGCAGCAGTACCAGCCGCAGCAGTACCAGGCTCCCGCTCCCCAG
CCGCAGGCCAGTTTCCGCAGCAATGACTACGGAGATGATGGTTCCTACGA
TCCCCGCTACAACGATCCCTCTTTCGGACAGAACCAGCAGAGCTACCAGC
AGCCCGCTGCCCAGCCGCAGTACCGTCCTGCTCCCCAGCCCGCCTACAAC
CCACAGCCCGTGCAGCCGCAGCAGCAGTACCAGCCTCAGTATCAGCAGCC
CCAACCCCAGTATCAGCAGCCGCAACCCCAGCAGGCGTACTACACCACCA
CCACCCCCAACCCACACCGCTTTTCGCCACCCGGCAAACTGTCCCTGAAC
CGCACGCCCGATGGCTTCACCTACTCCTTCAACAAGGTAGCAAGCTTTCT
AGACC
BO11941.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12045-PA | 726 | CG12045-RA | 1..723 | 17..739 | 3615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:02:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr100A-RA | 1378 | CG12045-RA | 152..874 | 17..739 | 3615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:02:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30868212..30868680 | 271..739 | 2330 | 99.8 | Plus |
3R | 32079331 | 3R | 30867907..30868154 | 29..276 | 1240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:02:17 has no hits.
BO11941.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:12 Download gff for
BO11941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12045-PA | 1..726 | 17..743 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:50:48 Download gff for
BO11941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12045-PA | 1..726 | 17..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:27:41 Download gff for
BO11941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr100A-RA | 145..879 | 9..745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:14:31 Download gff for
BO11941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr100A-RA | 145..879 | 9..745 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:14:31 Download gff for
BO11941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30867907..30868154 | 29..276 | 100 | -> | Plus |
3R | 30868218..30868685 | 277..745 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:27:41 Download gff for
BO11941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26693629..26693876 | 29..276 | 100 | -> | Plus |
arm_3R | 26693940..26694407 | 277..745 | 99 | | Plus |
BO11941.complete Sequence
757 bp assembled on 2006-10-11
GenBank Submission: FJ632253
> BO11941.complete
GAAGTTATCAGTCGACATGTTCAGATTTCTTGCACTGACCACCTTGGTGG
CCCTGGCTTCCAGCCAGCACTATCACCAGGATCCCAAAACGGCGGCCATC
ATCAGTGAGCAGCGTTATCTGTCCGGAGATGGAAAGTTCGGAGCTGCCTA
TGAGCAGGAGGATGGCATCAACTTCAAGGAGGAGACGGATGCGGATGGAA
CACGTCATGGCAGCTACAGCTATCTGGATCCCACGGGCCAGAGGCGTACT
ATTTCGTACACAGCTGGCAAAAATGGTTTCCAAGCTTCTGGAGATCACTT
GCCCCAGGCACCACCTGCTCCACCACAGCCCGTGCCCACAGCGGGATATC
AGCCACAGCAGCAGTACCAGCCGCAGCAGTACCAGGCTCCCGCTCCCCAG
CCGCAGGCCAGTTTCCGCAGCAATGACTACGGAGATGATGGTTCCTACGA
TCCCCGCTACAACGATCCCTCTTTCGGACAGAACCAGCAGAGCTACCAGC
AGCCCGCTGCCCAGCCGCAGTACCGTCCTGCTCCCCAGCCCGCCTACAAC
CCACAGCCCGTGCAGCCGCAGCAGCAGTACCAGCCTCAGTATCAGCAGCC
CCAACCCCAGTATCAGCAGCCGCAACCCCAGCAGGCGTACTACACCACCA
CCACCCCCAACCCACACCGCTTTTCGCCACCCGGCAAACTGTCCCTGAAC
CGCACGCCCGATGGCTTCACCTACTCCTTCAACAAGGTAGCAAGCTTTCT
AGACCAT
BO11941.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:54:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr100A-RA | 726 | CG12045-PA | 1..723 | 17..739 | 3615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:54:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr100A-RA | 1378 | CG12045-RA | 152..874 | 17..739 | 3615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:54:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30868212..30868680 | 271..739 | 2330 | 99.8 | Plus |
3R | 32079331 | 3R | 30867907..30868154 | 29..276 | 1240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:54:29 has no hits.
BO11941.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:55 Download gff for
BO11941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr100A-RA | 1..726 | 17..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:14 Download gff for
BO11941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr100A-RA | 143..877 | 9..745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:31 Download gff for
BO11941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr100A-RA | 157..874 | 22..741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:55 Download gff for
BO11941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr100A-RA | 143..877 | 9..745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:31 Download gff for
BO11941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr100A-RA | 157..874 | 22..741 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:31 Download gff for
BO11941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30867904..30868154 | 22..276 | 98 | -> | Plus |
3R | 30868218..30868680 | 277..741 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:31 Download gff for
BO11941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26693626..26693876 | 22..276 | 98 | -> | Plus |
arm_3R | 26693940..26694402 | 277..741 | 99 | | Plus |
BO11941.pep Sequence
Translation from 16 to 757
> BO11941.pep
MFRFLALTTLVALASSQHYHQDPKTAAIISEQRYLSGDGKFGAAYEQEDG
INFKEETDADGTRHGSYSYLDPTGQRRTISYTAGKNGFQASGDHLPQAPP
APPQPVPTAGYQPQQQYQPQQYQAPAPQPQASFRSNDYGDDGSYDPRYND
PSFGQNQQSYQQPAAQPQYRPAPQPAYNPQPVQPQQQYQPQYQQPQPQYQ
QPQPQQAYYTTTTPNPHRFSPPGKLSLNRTPDGFTYSFNKVASFLDH
BO11941.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr100A-PA | 241 | CG12045-PA | 1..241 | 1..241 | 1324 | 100 | Plus |
Cpr97Eb-PA | 235 | CG15884-PA | 12..206 | 10..208 | 214 | 34.6 | Plus |
Cpr97Ea-PB | 363 | CG6131-PB | 35..230 | 5..206 | 214 | 32.1 | Plus |
Cpr97Ea-PA | 366 | CG6131-PA | 38..233 | 5..206 | 214 | 32.1 | Plus |
Cpr47Ee-PA | 369 | CG13222-PA | 99..340 | 20..210 | 180 | 28.4 | Plus |