Clone BO11941 Report

Search the DGRC for BO11941

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:119
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCpr100A-RA
Protein status:BO11941.pep: validated full length
Sequenced Size:757

Clone Sequence Records

BO11941.5prime Sequence

755 bp (754 high quality bases) assembled on 2006-04-19

> BO11941.5prime
GAAGTTATCAGTCGACATGTTCAGATTTCTTGCACTGACCACCTTGGTGG
CCCTGGCTTCCAGCCAGCACTATCACCAGGATCCCAAAACGGCGGCCATC
ATCAGTGAGCAGCGTTATCTGTCCGGAGATGGAAAGTTCGGAGCTGCCTA
TGAGCAGGAGGATGGCATCAACTTCAAGGAGGAGACGGATGCGGATGGAA
CACGTCATGGCAGCTACAGCTATCTGGATCCCACGGGCCAGAGGCGTACT
ATTTCGTACACAGCTGGCAAAAATGGTTTCCAAGCTTCTGGAGATCACTT
GCCCCAGGCACCACCTGCTCCACCACAGCCCGTGCCCACAGCGGGATATC
AGCCACAGCAGCAGTACCAGCCGCAGCAGTACCAGGCTCCCGCTCCCCAG
CCGCAGGCCAGTTTCCGCAGCAATGACTACGGAGATGATGGTTCCTACGA
TCCCCGCTACAACGATCCCTCTTTCGGACAGAACCAGCAGAGCTACCAGC
AGCCCGCTGCCCAGCCGCAGTACCGTCCTGCTCCCCAGCCCGCCTACAAC
CCACAGCCCGTGCAGCCGCAGCAGCAGTACCAGCCTCAGTATCAGCAGCC
CCAACCCCAGTATCAGCAGCCGCAACCCCAGCAGGCGTACTACACCACCA
CCACCCCCAACCCACACCGCTTTTCGCCACCCGGCAAACTGTCCCTGAAC
CGCACGCCCGATGGCTTCACCTACTCCTTCAACAAGGTAGCAAGCTTTCT
AGACC

BO11941.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG12045-PA 726 CG12045-RA 1..723 17..739 3615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr100A-RA 1378 CG12045-RA 152..874 17..739 3615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30868212..30868680 271..739 2330 99.8 Plus
3R 32079331 3R 30867907..30868154 29..276 1240 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:02:17 has no hits.

BO11941.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:12 Download gff for BO11941.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12045-PA 1..726 17..743 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:50:48 Download gff for BO11941.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12045-PA 1..726 17..743 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:27:41 Download gff for BO11941.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr100A-RA 145..879 9..745 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:14:31 Download gff for BO11941.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr100A-RA 145..879 9..745 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:14:31 Download gff for BO11941.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30867907..30868154 29..276 100 -> Plus
3R 30868218..30868685 277..745 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:27:41 Download gff for BO11941.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26693629..26693876 29..276 100 -> Plus
arm_3R 26693940..26694407 277..745 99   Plus

BO11941.complete Sequence

757 bp assembled on 2006-10-11

GenBank Submission: FJ632253

> BO11941.complete
GAAGTTATCAGTCGACATGTTCAGATTTCTTGCACTGACCACCTTGGTGG
CCCTGGCTTCCAGCCAGCACTATCACCAGGATCCCAAAACGGCGGCCATC
ATCAGTGAGCAGCGTTATCTGTCCGGAGATGGAAAGTTCGGAGCTGCCTA
TGAGCAGGAGGATGGCATCAACTTCAAGGAGGAGACGGATGCGGATGGAA
CACGTCATGGCAGCTACAGCTATCTGGATCCCACGGGCCAGAGGCGTACT
ATTTCGTACACAGCTGGCAAAAATGGTTTCCAAGCTTCTGGAGATCACTT
GCCCCAGGCACCACCTGCTCCACCACAGCCCGTGCCCACAGCGGGATATC
AGCCACAGCAGCAGTACCAGCCGCAGCAGTACCAGGCTCCCGCTCCCCAG
CCGCAGGCCAGTTTCCGCAGCAATGACTACGGAGATGATGGTTCCTACGA
TCCCCGCTACAACGATCCCTCTTTCGGACAGAACCAGCAGAGCTACCAGC
AGCCCGCTGCCCAGCCGCAGTACCGTCCTGCTCCCCAGCCCGCCTACAAC
CCACAGCCCGTGCAGCCGCAGCAGCAGTACCAGCCTCAGTATCAGCAGCC
CCAACCCCAGTATCAGCAGCCGCAACCCCAGCAGGCGTACTACACCACCA
CCACCCCCAACCCACACCGCTTTTCGCCACCCGGCAAACTGTCCCTGAAC
CGCACGCCCGATGGCTTCACCTACTCCTTCAACAAGGTAGCAAGCTTTCT
AGACCAT

BO11941.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr100A-RA 726 CG12045-PA 1..723 17..739 3615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:54:31
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr100A-RA 1378 CG12045-RA 152..874 17..739 3615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:54:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30868212..30868680 271..739 2330 99.8 Plus
3R 32079331 3R 30867907..30868154 29..276 1240 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:54:29 has no hits.

BO11941.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:55 Download gff for BO11941.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr100A-RA 1..726 17..743 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:14 Download gff for BO11941.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr100A-RA 143..877 9..745 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:31 Download gff for BO11941.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr100A-RA 157..874 22..741 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:55 Download gff for BO11941.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr100A-RA 143..877 9..745 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:31 Download gff for BO11941.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr100A-RA 157..874 22..741 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:31 Download gff for BO11941.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30867904..30868154 22..276 98 -> Plus
3R 30868218..30868680 277..741 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:31 Download gff for BO11941.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26693626..26693876 22..276 98 -> Plus
arm_3R 26693940..26694402 277..741 99   Plus

BO11941.pep Sequence

Translation from 16 to 757

> BO11941.pep
MFRFLALTTLVALASSQHYHQDPKTAAIISEQRYLSGDGKFGAAYEQEDG
INFKEETDADGTRHGSYSYLDPTGQRRTISYTAGKNGFQASGDHLPQAPP
APPQPVPTAGYQPQQQYQPQQYQAPAPQPQASFRSNDYGDDGSYDPRYND
PSFGQNQQSYQQPAAQPQYRPAPQPAYNPQPVQPQQQYQPQYQQPQPQYQ
QPQPQQAYYTTTTPNPHRFSPPGKLSLNRTPDGFTYSFNKVASFLDH

BO11941.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:01
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr100A-PA 241 CG12045-PA 1..241 1..241 1324 100 Plus
Cpr97Eb-PA 235 CG15884-PA 12..206 10..208 214 34.6 Plus
Cpr97Ea-PB 363 CG6131-PB 35..230 5..206 214 32.1 Plus
Cpr97Ea-PA 366 CG6131-PA 38..233 5..206 214 32.1 Plus
Cpr47Ee-PA 369 CG13222-PA 99..340 20..210 180 28.4 Plus