Clone BO11945 Report

Search the DGRC for BO11945

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:119
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptCG13822-RA
Protein status:BO11945.pep: validated full length
Sequenced Size:682

Clone Sequence Records

BO11945.3prime Sequence

680 bp (679 high quality bases) assembled on 2006-04-19

> BO11945.3prime
ATGGTCTAGAAAGCTTGCCAAAATTGCGGAACAAGTGGGCAGTTTGATGT
TGAACTTTTTCAGATACTGCCGACAGAAGTGTCTTTCGAAGTTGTTGCGA
ATGCTTCTCTGGTCGTAAGGATCAAAGTCATTCTCGAACACAATGGTGGG
CACAAAGGAGATGCCCAGTTTAAGGGTTTCCTTGCCGTAGGGCGCCAGTA
TTTCTGCCGTGGTTCGGGATGCCTTACACTCCCTGGCCTTGCTGACGTCC
ACACCCATGCTCCTCGAGCACGGGCCCAGCTCATTCGAATAGGAGCGCAG
CATGCAGTAGATCAGATTGAAGGCCTTCCGAATGTCCAGGGTCTCAATAA
TGCAGGCATGGAGTGCATTTAGTTCGCACTCATCCACGCCATGCTGACAA
AATACTTGGCTCTCGCCAGTGGATGTGTTGTTGTAGAACCCCGCCTTGCC
AAATGGATATAGCTTTAGATCGGTGACCGACCACCAGTCGTTGTCCTGCA
GAGCATCGTACAATCTGCGCCGGATGAAGCTCATGCTGTCCGGGCACAGG
GCCTCGTAGTGAATGGCCACCAGGAGCCGGGACTCATCCGGGGACTGGCC
ATTTCCGGGCGTGGGCCAAACGAGCAGCAGACACAGGGTAAACAGTAGCC
CAAATATTTTATTCATGTCGACTGATAACT

BO11945.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG13822-PA 651 CG13822-RA 1..648 666..19 3240 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:59:59
Subject Length Description Subject Range Query Range Score Percent Strand
GILT3-RA 773 CG13822-RA 53..700 666..19 3240 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:59:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23677855..23678165 439..129 1555 100 Minus
3R 32079331 3R 23677410..23677637 666..439 1140 100 Minus
3R 32079331 3R 23678238..23678348 129..19 555 100 Minus
Blast to na_te.dros performed 2015-02-12 11:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy9 5349 gypsy9 GYPSY9 5349bp 2964..3014 461..512 113 71.2 Plus

BO11945.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:18 Download gff for BO11945.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13822-PA 1..651 15..666 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:50:57 Download gff for BO11945.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13822-PA 1..651 15..666 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:13:05 Download gff for BO11945.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13822-RA 49..710 7..669 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:44:00 Download gff for BO11945.3prime
Subject Subject Range Query Range Percent Splice Strand
GILT3-RA 49..710 7..669 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:44:00 Download gff for BO11945.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23677406..23677637 439..669 99 -> Minus
3R 23677856..23678164 130..438 100 -> Minus
3R 23678238..23678358 7..129 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:13:05 Download gff for BO11945.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19503960..19504080 7..129 96   Minus
arm_3R 19503128..19503359 439..669 99 -> Minus
arm_3R 19503578..19503886 130..438 100 -> Minus

BO11945.5prime Sequence

680 bp (679 high quality bases) assembled on 2006-04-19

> BO11945.5prime
GAAGTTATCAGTCGACATGAATAAAATATTTGGGCTACTGTTTACCCTGT
GTCTGCTGCTCGTTTGGCCCACGCCCGGAAATGGCCAGTCCCCGGATGAG
TCCCGGCTCCTGGTGGCCATTCACTACGAGGCCCTGTGCCCGGACAGCAT
GAGCTTCATCCGGCGCAGATTGTACGATGCTCTGCAGGACAACGACTGGT
GGTCGGTCACCGATCTAAAGCTATATCCATTTGGCAAGGCGGGGTTCTAC
AACAACACATCCACTGGCGAGAGCTGAGTATTTTGTCAGCATGGCGTGGA
TGAGTGCGAACTAAATGCACTCCATGCCTGCATTATTGAGACCCTGGACA
TTCGGAAGGCCTTCAATCTGATCTACTGCATGCTGCGCTCCTATTCGAAT
GAGCTGGGCCCGTGCTCGAGGAGCATGGGTGTGGACGTCAGCAAGGCCAG
GGAGTGTAAGGCATCCCGAACCACGGCAGAAATACTGGCGCCCTACGGCA
AGGAAACCCTTAAACTGGGCATCTCCTTTGTGCCCACCATTGTGTTCGAG
AATGACTTTGATCCTTACGACCAGAGAAGCATTCGCAACAACTTCGAAAG
ACACTTCTGTCGGCAGTATCTGAAAAAGTTCAACATCAAACTGCCCACTT
GTTCCGCAATTTTGGCAAGCTTTCTAGACC

BO11945.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG13822-PA 651 CG13822-RA 1..648 17..664 3190 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:05:06
Subject Length Description Subject Range Query Range Score Percent Strand
GILT3-RA 773 CG13822-RA 53..700 17..664 3210 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:05:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23677855..23678165 244..554 1525 99.4 Plus
3R 32079331 3R 23677410..23677637 17..244 1140 100 Plus
3R 32079331 3R 23678238..23678348 554..664 555 100 Plus
Blast to na_te.dros performed 2015-02-12 20:05:05
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy9 5349 gypsy9 GYPSY9 5349bp 2964..3014 222..171 113 71.2 Minus

BO11945.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:19 Download gff for BO11945.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13822-PA 1..651 17..668 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:50:59 Download gff for BO11945.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13822-PA 1..651 17..668 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:54:36 Download gff for BO11945.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13822-RA 49..710 14..676 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:39:40 Download gff for BO11945.5prime
Subject Subject Range Query Range Percent Splice Strand
GILT3-RA 49..710 14..676 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:39:40 Download gff for BO11945.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23677406..23677637 14..244 99 -> Plus
3R 23677856..23678164 245..553 99 -> Plus
3R 23678238..23678358 554..676 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:54:36 Download gff for BO11945.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19503128..19503359 14..244 99 -> Plus
arm_3R 19503578..19503886 245..553 99 -> Plus
arm_3R 19503960..19504080 554..676 96   Plus

BO11945.complete Sequence

682 bp assembled on 2006-10-11

GenBank Submission: FJ632254

> BO11945.complete
GAAGTTATCAGTCGACATGAATAAAATATTTGGGCTACTGTTTACCCTGT
GTCTGCTGCTCGTTTGGCCCACGCCCGGAAATGGCCAGTCCCCGGATGAG
TCCCGGCTCCTGGTGGCCATTCACTACGAGGCCCTGTGCCCGGACAGCAT
GAGCTTCATCCGGCGCAGATTGTACGATGCTCTGCAGGACAACGACTGGT
GGTCGGTCACCGATCTAAAGCTATATCCATTTGGCAAGGCGGGGTTCTAC
AACAACACATCCACTGGCGAGAGCCAAGTATTTTGTCAGCATGGCGTGGA
TGAGTGCGAACTAAATGCACTCCATGCCTGCATTATTGAGACCCTGGACA
TTCGGAAGGCCTTCAATCTGATCTACTGCATGCTGCGCTCCTATTCGAAT
GAGCTGGGCCCGTGCTCGAGGAGCATGGGTGTGGACGTCAGCAAGGCCAG
GGAGTGTAAGGCATCCCGAACCACGGCAGAAATACTGGCGCCCTACGGCA
AGGAAACCCTTAAACTGGGCATCTCCTTTGTGCCCACCATTGTGTTCGAG
AATGACTTTGATCCTTACGACCAGAGAAGCATTCGCAACAACTTCGAAAG
ACACTTCTGTCGGCAGTATCTGAAAAAGTTCAACATCAAACTGCCCACTT
GTTCCGCAATTTTGGCAAGCTTTCTAGACCAT

BO11945.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
GILT3-RA 651 CG13822-PA 1..648 17..664 3240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
GILT3-RA 773 CG13822-RA 53..700 17..664 3240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:50:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23677855..23678165 244..554 1555 100 Plus
3R 32079331 3R 23677410..23677637 17..244 1140 100 Plus
3R 32079331 3R 23678238..23678348 554..664 555 100 Plus
Blast to na_te.dros performed 2014-11-27 13:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy9 5349 gypsy9 GYPSY9 5349bp 2964..3014 222..171 113 71.2 Minus

BO11945.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:56 Download gff for BO11945.complete
Subject Subject Range Query Range Percent Splice Strand
CG13822-RA 1..651 17..668 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:20 Download gff for BO11945.complete
Subject Subject Range Query Range Percent Splice Strand
CG13822-RA 49..710 14..676 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:24 Download gff for BO11945.complete
Subject Subject Range Query Range Percent Splice Strand
CG13822-RA 53..700 17..666 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:56 Download gff for BO11945.complete
Subject Subject Range Query Range Percent Splice Strand
CG13822-RA 49..710 14..676 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:08 Download gff for BO11945.complete
Subject Subject Range Query Range Percent Splice Strand
GILT3-RA 53..700 17..666 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:08 Download gff for BO11945.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23677856..23678164 245..553 100 -> Plus
3R 23678238..23678348 554..666 98   Plus
3R 23677410..23677637 17..244 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:24 Download gff for BO11945.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19503132..19503359 17..244 100 -> Plus
arm_3R 19503578..19503886 245..553 100 -> Plus
arm_3R 19503960..19504070 554..666 98   Plus

BO11945.pep Sequence

Translation from 16 to 682

> BO11945.pep
MNKIFGLLFTLCLLLVWPTPGNGQSPDESRLLVAIHYEALCPDSMSFIRR
RLYDALQDNDWWSVTDLKLYPFGKAGFYNNTSTGESQVFCQHGVDECELN
ALHACIIETLDIRKAFNLIYCMLRSYSNELGPCSRSMGVDVSKARECKAS
RTTAEILAPYGKETLKLGISFVPTIVFENDFDPYDQRSIRNNFERHFCRQ
YLKKFNIKLPTCSAILASFLDH

BO11945.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
GILT3-PA 216 CG13822-PA 1..216 1..216 1161 100 Plus
GILT2-PA 207 CG10157-PA 7..206 11..212 381 38.5 Plus
CG41378-PB 228 CG41378-PB 11..195 3..178 183 28.6 Plus
CG41378-PC 196 CG41378-PC 13..163 30..178 182 31 Plus
CG41378-PD 205 CG41378-PD 22..172 30..178 182 31 Plus