Clone Sequence Records
BO11945.3prime Sequence
680 bp (679 high quality bases) assembled on 2006-04-19
> BO11945.3prime
ATGGTCTAGAAAGCTTGCCAAAATTGCGGAACAAGTGGGCAGTTTGATGT
TGAACTTTTTCAGATACTGCCGACAGAAGTGTCTTTCGAAGTTGTTGCGA
ATGCTTCTCTGGTCGTAAGGATCAAAGTCATTCTCGAACACAATGGTGGG
CACAAAGGAGATGCCCAGTTTAAGGGTTTCCTTGCCGTAGGGCGCCAGTA
TTTCTGCCGTGGTTCGGGATGCCTTACACTCCCTGGCCTTGCTGACGTCC
ACACCCATGCTCCTCGAGCACGGGCCCAGCTCATTCGAATAGGAGCGCAG
CATGCAGTAGATCAGATTGAAGGCCTTCCGAATGTCCAGGGTCTCAATAA
TGCAGGCATGGAGTGCATTTAGTTCGCACTCATCCACGCCATGCTGACAA
AATACTTGGCTCTCGCCAGTGGATGTGTTGTTGTAGAACCCCGCCTTGCC
AAATGGATATAGCTTTAGATCGGTGACCGACCACCAGTCGTTGTCCTGCA
GAGCATCGTACAATCTGCGCCGGATGAAGCTCATGCTGTCCGGGCACAGG
GCCTCGTAGTGAATGGCCACCAGGAGCCGGGACTCATCCGGGGACTGGCC
ATTTCCGGGCGTGGGCCAAACGAGCAGCAGACACAGGGTAAACAGTAGCC
CAAATATTTTATTCATGTCGACTGATAACT
BO11945.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13822-PA | 651 | CG13822-RA | 1..648 | 666..19 | 3240 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:59:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GILT3-RA | 773 | CG13822-RA | 53..700 | 666..19 | 3240 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:59:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23677855..23678165 | 439..129 | 1555 | 100 | Minus |
3R | 32079331 | 3R | 23677410..23677637 | 666..439 | 1140 | 100 | Minus |
3R | 32079331 | 3R | 23678238..23678348 | 129..19 | 555 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 11:59:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy9 | 5349 | gypsy9 GYPSY9 5349bp | 2964..3014 | 461..512 | 113 | 71.2 | Plus |
BO11945.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:18 Download gff for
BO11945.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13822-PA | 1..651 | 15..666 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:50:57 Download gff for
BO11945.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13822-PA | 1..651 | 15..666 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:13:05 Download gff for
BO11945.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13822-RA | 49..710 | 7..669 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:44:00 Download gff for
BO11945.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GILT3-RA | 49..710 | 7..669 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:44:00 Download gff for
BO11945.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23677406..23677637 | 439..669 | 99 | -> | Minus |
3R | 23677856..23678164 | 130..438 | 100 | -> | Minus |
3R | 23678238..23678358 | 7..129 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:13:05 Download gff for
BO11945.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19503960..19504080 | 7..129 | 96 | | Minus |
arm_3R | 19503128..19503359 | 439..669 | 99 | -> | Minus |
arm_3R | 19503578..19503886 | 130..438 | 100 | -> | Minus |
BO11945.5prime Sequence
680 bp (679 high quality bases) assembled on 2006-04-19
> BO11945.5prime
GAAGTTATCAGTCGACATGAATAAAATATTTGGGCTACTGTTTACCCTGT
GTCTGCTGCTCGTTTGGCCCACGCCCGGAAATGGCCAGTCCCCGGATGAG
TCCCGGCTCCTGGTGGCCATTCACTACGAGGCCCTGTGCCCGGACAGCAT
GAGCTTCATCCGGCGCAGATTGTACGATGCTCTGCAGGACAACGACTGGT
GGTCGGTCACCGATCTAAAGCTATATCCATTTGGCAAGGCGGGGTTCTAC
AACAACACATCCACTGGCGAGAGCTGAGTATTTTGTCAGCATGGCGTGGA
TGAGTGCGAACTAAATGCACTCCATGCCTGCATTATTGAGACCCTGGACA
TTCGGAAGGCCTTCAATCTGATCTACTGCATGCTGCGCTCCTATTCGAAT
GAGCTGGGCCCGTGCTCGAGGAGCATGGGTGTGGACGTCAGCAAGGCCAG
GGAGTGTAAGGCATCCCGAACCACGGCAGAAATACTGGCGCCCTACGGCA
AGGAAACCCTTAAACTGGGCATCTCCTTTGTGCCCACCATTGTGTTCGAG
AATGACTTTGATCCTTACGACCAGAGAAGCATTCGCAACAACTTCGAAAG
ACACTTCTGTCGGCAGTATCTGAAAAAGTTCAACATCAAACTGCCCACTT
GTTCCGCAATTTTGGCAAGCTTTCTAGACC
BO11945.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13822-PA | 651 | CG13822-RA | 1..648 | 17..664 | 3190 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:05:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GILT3-RA | 773 | CG13822-RA | 53..700 | 17..664 | 3210 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:05:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23677855..23678165 | 244..554 | 1525 | 99.4 | Plus |
3R | 32079331 | 3R | 23677410..23677637 | 17..244 | 1140 | 100 | Plus |
3R | 32079331 | 3R | 23678238..23678348 | 554..664 | 555 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 20:05:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy9 | 5349 | gypsy9 GYPSY9 5349bp | 2964..3014 | 222..171 | 113 | 71.2 | Minus |
BO11945.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:19 Download gff for
BO11945.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13822-PA | 1..651 | 17..668 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:50:59 Download gff for
BO11945.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13822-PA | 1..651 | 17..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 11:54:36 Download gff for
BO11945.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13822-RA | 49..710 | 14..676 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:39:40 Download gff for
BO11945.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GILT3-RA | 49..710 | 14..676 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:39:40 Download gff for
BO11945.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23677406..23677637 | 14..244 | 99 | -> | Plus |
3R | 23677856..23678164 | 245..553 | 99 | -> | Plus |
3R | 23678238..23678358 | 554..676 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 11:54:36 Download gff for
BO11945.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19503128..19503359 | 14..244 | 99 | -> | Plus |
arm_3R | 19503578..19503886 | 245..553 | 99 | -> | Plus |
arm_3R | 19503960..19504080 | 554..676 | 96 | | Plus |
BO11945.complete Sequence
682 bp assembled on 2006-10-11
GenBank Submission: FJ632254
> BO11945.complete
GAAGTTATCAGTCGACATGAATAAAATATTTGGGCTACTGTTTACCCTGT
GTCTGCTGCTCGTTTGGCCCACGCCCGGAAATGGCCAGTCCCCGGATGAG
TCCCGGCTCCTGGTGGCCATTCACTACGAGGCCCTGTGCCCGGACAGCAT
GAGCTTCATCCGGCGCAGATTGTACGATGCTCTGCAGGACAACGACTGGT
GGTCGGTCACCGATCTAAAGCTATATCCATTTGGCAAGGCGGGGTTCTAC
AACAACACATCCACTGGCGAGAGCCAAGTATTTTGTCAGCATGGCGTGGA
TGAGTGCGAACTAAATGCACTCCATGCCTGCATTATTGAGACCCTGGACA
TTCGGAAGGCCTTCAATCTGATCTACTGCATGCTGCGCTCCTATTCGAAT
GAGCTGGGCCCGTGCTCGAGGAGCATGGGTGTGGACGTCAGCAAGGCCAG
GGAGTGTAAGGCATCCCGAACCACGGCAGAAATACTGGCGCCCTACGGCA
AGGAAACCCTTAAACTGGGCATCTCCTTTGTGCCCACCATTGTGTTCGAG
AATGACTTTGATCCTTACGACCAGAGAAGCATTCGCAACAACTTCGAAAG
ACACTTCTGTCGGCAGTATCTGAAAAAGTTCAACATCAAACTGCCCACTT
GTTCCGCAATTTTGGCAAGCTTTCTAGACCAT
BO11945.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:50:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GILT3-RA | 651 | CG13822-PA | 1..648 | 17..664 | 3240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:50:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GILT3-RA | 773 | CG13822-RA | 53..700 | 17..664 | 3240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:50:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23677855..23678165 | 244..554 | 1555 | 100 | Plus |
3R | 32079331 | 3R | 23677410..23677637 | 17..244 | 1140 | 100 | Plus |
3R | 32079331 | 3R | 23678238..23678348 | 554..664 | 555 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:50:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy9 | 5349 | gypsy9 GYPSY9 5349bp | 2964..3014 | 222..171 | 113 | 71.2 | Minus |
BO11945.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:56 Download gff for
BO11945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13822-RA | 1..651 | 17..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:20 Download gff for
BO11945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13822-RA | 49..710 | 14..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:24 Download gff for
BO11945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13822-RA | 53..700 | 17..666 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:56 Download gff for
BO11945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13822-RA | 49..710 | 14..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:08 Download gff for
BO11945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GILT3-RA | 53..700 | 17..666 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:08 Download gff for
BO11945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23677856..23678164 | 245..553 | 100 | -> | Plus |
3R | 23678238..23678348 | 554..666 | 98 | | Plus |
3R | 23677410..23677637 | 17..244 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:24 Download gff for
BO11945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19503132..19503359 | 17..244 | 100 | -> | Plus |
arm_3R | 19503578..19503886 | 245..553 | 100 | -> | Plus |
arm_3R | 19503960..19504070 | 554..666 | 98 | | Plus |
BO11945.pep Sequence
Translation from 16 to 682
> BO11945.pep
MNKIFGLLFTLCLLLVWPTPGNGQSPDESRLLVAIHYEALCPDSMSFIRR
RLYDALQDNDWWSVTDLKLYPFGKAGFYNNTSTGESQVFCQHGVDECELN
ALHACIIETLDIRKAFNLIYCMLRSYSNELGPCSRSMGVDVSKARECKAS
RTTAEILAPYGKETLKLGISFVPTIVFENDFDPYDQRSIRNNFERHFCRQ
YLKKFNIKLPTCSAILASFLDH
BO11945.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:50:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GILT3-PA | 216 | CG13822-PA | 1..216 | 1..216 | 1161 | 100 | Plus |
GILT2-PA | 207 | CG10157-PA | 7..206 | 11..212 | 381 | 38.5 | Plus |
CG41378-PB | 228 | CG41378-PB | 11..195 | 3..178 | 183 | 28.6 | Plus |
CG41378-PC | 196 | CG41378-PC | 13..163 | 30..178 | 182 | 31 | Plus |
CG41378-PD | 205 | CG41378-PD | 22..172 | 30..178 | 182 | 31 | Plus |