Clone Sequence Records
BO11947.3prime Sequence
578 bp (577 high quality bases) assembled on 2006-04-19
> BO11947.3prime
ATGGTCTAGAAAGCTTGCTTTTCTCGTCTTAAACTTGGGCTGCGCCTTGC
CGTAGTGCTGATCGATGTGTGAAACGGGCGCGCGCCTCTTGTCGTTGCGC
TCCTTTTGCGATTTTGTTCGGCATTTGACGCTGGCGGCGCCCGTTTGATT
TTTGCCCAACTGATGGAACTTCTTGCGCTCCTCGCGAATATTCTTCAGCC
GCTGGCGTTCGTCCTTCAGCTCCTTGTAGTTTTTGGAGGCCTTCTTCAGC
GGCTTGGCGCCCAGCTTGATCAGCTGAAACATTTCCATTTTGCTCTTGTT
TTTGATCACACGCTGGTTTTTGATCGCAAAATTGAGCACCTCGTGGCGCG
CCTTCTTGATATCGAATTCGGGATTCAGTTCCATGCCGCCCTCCTTGGTT
TTGTGCGATTTTTGGACGCCGTCGTCCTGCTTTTTTGTTCCACTTTTCGA
TTGGAAGTGCGATTCGTGGAAGACGTGTGCCTGAAATTCGGTGTTCTCCT
GCTTCTTTTGCAGCGCCAACGCTGCACGCGTGGGCACCGGCTTAAAATCG
GCGCTGACGTTCATGTCGACTGATAACT
BO11947.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1738-PA | 549 | CG1738-RA | 1..546 | 564..19 | 2730 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:05:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1738-RA | 799 | CG1738-RA | 124..669 | 564..19 | 2730 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:05:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11349172..11349717 | 564..19 | 2730 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:05:23 has no hits.
BO11947.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:22 Download gff for
BO11947.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1738-PA | 1..549 | 18..564 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:51:03 Download gff for
BO11947.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1738-PA | 1..549 | 18..564 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:13:26 Download gff for
BO11947.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1738-RA | 120..674 | 11..572 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:58:03 Download gff for
BO11947.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1738-RA | 120..674 | 11..572 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:58:03 Download gff for
BO11947.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11349168..11349722 | 11..572 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:13:26 Download gff for
BO11947.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11243201..11243755 | 11..572 | 98 | | Minus |
BO11947.5prime Sequence
578 bp (577 high quality bases) assembled on 2006-04-19
> BO11947.5prime
GAAGTTATCAGTCGACATGAACGTCAGCGCCGATTTTAAGCCGGTGCCCA
CGCGTGCAGCGTTGGCGCTGCAAAAGAAGCAGGAGAACACCGAATTTCAG
GCACACGTCTTCCACGAATCGCACTTCCAATCGAAAAGTGGAACAAAAAA
GCAGGACGACGGCGTCCAAAAATCGCACAAAACCAAGGAGGGCGGCATGG
AACTGAATCCCGAATTCGATATCAAGAAGGCGCGCCACGAGGTGCTCAAT
TTTGCGATCAAAAACCAGCGTGTGATCAAAAACAAGAGCAAAATGGAAAT
GTTTCAGCTGATCAAGCTGGGCGCCAAGCCGCTGAAGAAGGCCTCCAAAA
ACTACAAGGAGCTGAAGGACGAACGCCAGCGGCTGAAGAATATTCGCGAG
GAGCGCAAGAAGTTCCATCAGTTGGGCAAAAATCAAACGGGCGCCGCCAG
CGTCAAATGCCGAACAAAATCGCAAAAGGAGCGCAACGACAAGAGGCGCG
CGCCCGTTTCACACATCGATCAGCACTACGGCAAGGCGCAGCCCAAGTTT
AAGACGAGAAAAGCAAGCTTTCTAGACC
BO11947.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1738-PA | 549 | CG1738-RA | 1..546 | 17..562 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 05:31:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1738-RA | 799 | CG1738-RA | 124..669 | 17..562 | 2730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 05:31:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11349172..11349717 | 17..562 | 2730 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 05:31:44 has no hits.
BO11947.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:23 Download gff for
BO11947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1738-PA | 1..549 | 17..563 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:51:05 Download gff for
BO11947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1738-PA | 1..549 | 17..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:14:35 Download gff for
BO11947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1738-RA | 120..674 | 9..570 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:46:27 Download gff for
BO11947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1738-RA | 120..674 | 9..570 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:46:27 Download gff for
BO11947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11349168..11349722 | 9..570 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:14:35 Download gff for
BO11947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11243201..11243755 | 9..570 | 98 | | Plus |
BO11947.complete Sequence
580 bp assembled on 2006-10-11
GenBank Submission: FJ632255
> BO11947.complete
GAAGTTATCAGTCGACATGAACGTCAGCGCCGATTTTAAGCCGGTGCCCA
CGCGTGCAGCGTTGGCGCTGCAAAAGAAGCAGGAGAACACCGAATTTCAG
GCACACGTCTTCCACGAATCGCACTTCCAATCGAAAAGTGGAACAAAAAA
GCAGGACGACGGCGTCCAAAAATCGCACAAAACCAAGGAGGGCGGCATGG
AACTGAATCCCGAATTCGATATCAAGAAGGCGCGCCACGAGGTGCTCAAT
TTTGCGATCAAAAACCAGCGTGTGATCAAAAACAAGAGCAAAATGGAAAT
GTTTCAGCTGATCAAGCTGGGCGCCAAGCCGCTGAAGAAGGCCTCCAAAA
ACTACAAGGAGCTGAAGGACGAACGCCAGCGGCTGAAGAATATTCGCGAG
GAGCGCAAGAAGTTCCATCAGTTGGGCAAAAATCAAACGGGCGCCGCCAG
CGTCAAATGCCGAACAAAATCGCAAAAGGAGCGCAACGACAAGAGGCGCG
CGCCCGTTTCACACATCGATCAGCACTACGGCAAGGCGCAGCCCAAGTTT
AAGACGAGAAAAGCAAGCTTTCTAGACCAT
BO11947.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:43:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1738-RA | 549 | CG1738-PA | 1..546 | 17..562 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:43:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1738-RA | 799 | CG1738-RA | 124..669 | 17..562 | 2730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:43:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11349172..11349717 | 17..562 | 2730 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:43:35 has no hits.
BO11947.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:57 Download gff for
BO11947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1738-RA | 1..549 | 17..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:49 Download gff for
BO11947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1738-RA | 115..669 | 9..570 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:28 Download gff for
BO11947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1738-RA | 124..665 | 17..558 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:57 Download gff for
BO11947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1738-RA | 115..669 | 9..570 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:30:41 Download gff for
BO11947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1738-RA | 124..665 | 17..558 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:30:41 Download gff for
BO11947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11349172..11349713 | 17..558 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:28 Download gff for
BO11947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11243205..11243746 | 17..558 | 100 | | Plus |
BO11947.pep Sequence
Translation from 16 to 580
> BO11947.pep
MNVSADFKPVPTRAALALQKKQENTEFQAHVFHESHFQSKSGTKKQDDGV
QKSHKTKEGGMELNPEFDIKKARHEVLNFAIKNQRVIKNKSKMEMFQLIK
LGAKPLKKASKNYKELKDERQRLKNIREERKKFHQLGKNQTGAASVKCRT
KSQKERNDKRRAPVSHIDQHYGKAQPKFKTRKASFLDH
BO11947.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:50:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1738-PA | 182 | CG1738-PA | 1..182 | 1..182 | 941 | 100 | Plus |