Clone BO11947 Report

Search the DGRC for BO11947

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:119
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG1738-RA
Protein status:BO11947.pep: validated full length
Sequenced Size:580

Clone Sequence Records

BO11947.3prime Sequence

578 bp (577 high quality bases) assembled on 2006-04-19

> BO11947.3prime
ATGGTCTAGAAAGCTTGCTTTTCTCGTCTTAAACTTGGGCTGCGCCTTGC
CGTAGTGCTGATCGATGTGTGAAACGGGCGCGCGCCTCTTGTCGTTGCGC
TCCTTTTGCGATTTTGTTCGGCATTTGACGCTGGCGGCGCCCGTTTGATT
TTTGCCCAACTGATGGAACTTCTTGCGCTCCTCGCGAATATTCTTCAGCC
GCTGGCGTTCGTCCTTCAGCTCCTTGTAGTTTTTGGAGGCCTTCTTCAGC
GGCTTGGCGCCCAGCTTGATCAGCTGAAACATTTCCATTTTGCTCTTGTT
TTTGATCACACGCTGGTTTTTGATCGCAAAATTGAGCACCTCGTGGCGCG
CCTTCTTGATATCGAATTCGGGATTCAGTTCCATGCCGCCCTCCTTGGTT
TTGTGCGATTTTTGGACGCCGTCGTCCTGCTTTTTTGTTCCACTTTTCGA
TTGGAAGTGCGATTCGTGGAAGACGTGTGCCTGAAATTCGGTGTTCTCCT
GCTTCTTTTGCAGCGCCAACGCTGCACGCGTGGGCACCGGCTTAAAATCG
GCGCTGACGTTCATGTCGACTGATAACT

BO11947.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG1738-PA 549 CG1738-RA 1..546 564..19 2730 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:05:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1738-RA 799 CG1738-RA 124..669 564..19 2730 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:05:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11349172..11349717 564..19 2730 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:05:23 has no hits.

BO11947.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:22 Download gff for BO11947.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1738-PA 1..549 18..564 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:51:03 Download gff for BO11947.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1738-PA 1..549 18..564 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:13:26 Download gff for BO11947.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1738-RA 120..674 11..572 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:58:03 Download gff for BO11947.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1738-RA 120..674 11..572 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:58:03 Download gff for BO11947.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11349168..11349722 11..572 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:13:26 Download gff for BO11947.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11243201..11243755 11..572 98   Minus

BO11947.5prime Sequence

578 bp (577 high quality bases) assembled on 2006-04-19

> BO11947.5prime
GAAGTTATCAGTCGACATGAACGTCAGCGCCGATTTTAAGCCGGTGCCCA
CGCGTGCAGCGTTGGCGCTGCAAAAGAAGCAGGAGAACACCGAATTTCAG
GCACACGTCTTCCACGAATCGCACTTCCAATCGAAAAGTGGAACAAAAAA
GCAGGACGACGGCGTCCAAAAATCGCACAAAACCAAGGAGGGCGGCATGG
AACTGAATCCCGAATTCGATATCAAGAAGGCGCGCCACGAGGTGCTCAAT
TTTGCGATCAAAAACCAGCGTGTGATCAAAAACAAGAGCAAAATGGAAAT
GTTTCAGCTGATCAAGCTGGGCGCCAAGCCGCTGAAGAAGGCCTCCAAAA
ACTACAAGGAGCTGAAGGACGAACGCCAGCGGCTGAAGAATATTCGCGAG
GAGCGCAAGAAGTTCCATCAGTTGGGCAAAAATCAAACGGGCGCCGCCAG
CGTCAAATGCCGAACAAAATCGCAAAAGGAGCGCAACGACAAGAGGCGCG
CGCCCGTTTCACACATCGATCAGCACTACGGCAAGGCGCAGCCCAAGTTT
AAGACGAGAAAAGCAAGCTTTCTAGACC

BO11947.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG1738-PA 549 CG1738-RA 1..546 17..562 2730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 05:31:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG1738-RA 799 CG1738-RA 124..669 17..562 2730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 05:31:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11349172..11349717 17..562 2730 100 Plus
Blast to na_te.dros performed on 2015-02-04 05:31:44 has no hits.

BO11947.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:23 Download gff for BO11947.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1738-PA 1..549 17..563 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:51:05 Download gff for BO11947.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1738-PA 1..549 17..563 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:14:35 Download gff for BO11947.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1738-RA 120..674 9..570 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:46:27 Download gff for BO11947.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1738-RA 120..674 9..570 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:46:27 Download gff for BO11947.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11349168..11349722 9..570 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:14:35 Download gff for BO11947.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11243201..11243755 9..570 98   Plus

BO11947.complete Sequence

580 bp assembled on 2006-10-11

GenBank Submission: FJ632255

> BO11947.complete
GAAGTTATCAGTCGACATGAACGTCAGCGCCGATTTTAAGCCGGTGCCCA
CGCGTGCAGCGTTGGCGCTGCAAAAGAAGCAGGAGAACACCGAATTTCAG
GCACACGTCTTCCACGAATCGCACTTCCAATCGAAAAGTGGAACAAAAAA
GCAGGACGACGGCGTCCAAAAATCGCACAAAACCAAGGAGGGCGGCATGG
AACTGAATCCCGAATTCGATATCAAGAAGGCGCGCCACGAGGTGCTCAAT
TTTGCGATCAAAAACCAGCGTGTGATCAAAAACAAGAGCAAAATGGAAAT
GTTTCAGCTGATCAAGCTGGGCGCCAAGCCGCTGAAGAAGGCCTCCAAAA
ACTACAAGGAGCTGAAGGACGAACGCCAGCGGCTGAAGAATATTCGCGAG
GAGCGCAAGAAGTTCCATCAGTTGGGCAAAAATCAAACGGGCGCCGCCAG
CGTCAAATGCCGAACAAAATCGCAAAAGGAGCGCAACGACAAGAGGCGCG
CGCCCGTTTCACACATCGATCAGCACTACGGCAAGGCGCAGCCCAAGTTT
AAGACGAGAAAAGCAAGCTTTCTAGACCAT

BO11947.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1738-RA 549 CG1738-PA 1..546 17..562 2730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1738-RA 799 CG1738-RA 124..669 17..562 2730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11349172..11349717 17..562 2730 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:43:35 has no hits.

BO11947.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:57 Download gff for BO11947.complete
Subject Subject Range Query Range Percent Splice Strand
CG1738-RA 1..549 17..563 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:49 Download gff for BO11947.complete
Subject Subject Range Query Range Percent Splice Strand
CG1738-RA 115..669 9..570 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:28 Download gff for BO11947.complete
Subject Subject Range Query Range Percent Splice Strand
CG1738-RA 124..665 17..558 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:57 Download gff for BO11947.complete
Subject Subject Range Query Range Percent Splice Strand
CG1738-RA 115..669 9..570 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:30:41 Download gff for BO11947.complete
Subject Subject Range Query Range Percent Splice Strand
CG1738-RA 124..665 17..558 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:30:41 Download gff for BO11947.complete
Subject Subject Range Query Range Percent Splice Strand
X 11349172..11349713 17..558 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:28 Download gff for BO11947.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11243205..11243746 17..558 100   Plus

BO11947.pep Sequence

Translation from 16 to 580

> BO11947.pep
MNVSADFKPVPTRAALALQKKQENTEFQAHVFHESHFQSKSGTKKQDDGV
QKSHKTKEGGMELNPEFDIKKARHEVLNFAIKNQRVIKNKSKMEMFQLIK
LGAKPLKKASKNYKELKDERQRLKNIREERKKFHQLGKNQTGAASVKCRT
KSQKERNDKRRAPVSHIDQHYGKAQPKFKTRKASFLDH

BO11947.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:50:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1738-PA 182 CG1738-PA 1..182 1..182 941 100 Plus