Clone BO11949 Report

Search the DGRC for BO11949

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:119
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptCG2126-RA
Protein status:BO11949.pep: validated full length
Sequenced Size:946

Clone Sequence Records

BO11949.5prime Sequence

844 bp (790 high quality bases) assembled on 2006-04-19

> BO11949.5prime
GAAGTTATCAGTCGACATGAGAATGTACGACGCGTTGGAACGCTGCCCAG
GAGCCTACTGTGGGCGATCACCGCTAGGAAACAACAGCTGGAGCAGCTGC
GGGGTCTGTCCCAGAGGATCTCGGGTGAACCAAAGTTACGCATGCTCTCC
ATGCCGCGACGAGTTAAGCACGTACTCCTGGCTATACCTGGGATTCATGA
CCATGCTGCCACTTATGATGCACTGCTTTTTCATTGACATGGACGCCAAG
GATCGCAAGTTTTCGCGGAAGCAGCTGATCTTGACGGCCAGCGCTTTCGT
TGAGGTTGCCATATCTGCCATCCTCGCCACCTTGCTAATGGAGCCCATGT
GGGAGCTGCGCCTCTACGCCTGTGATGTTCGAAAACTTACTGACTGGTAC
ACATTGTTTTACAACCCCAGCCCCAATTATGAGGCACGAGTCTACTGCAC
CCAGGAGGCAGTTTACCCATTGCAAACCATCGTGCTGGTTTTCTACTTTC
TGTGCCTGGTGAACATGTTTCTCATACGCCCGCTAGTCAGCAAAATTATG
GATGTGGGGGGCAGAAGCAAGGCGCCGATTTACTCGGCTCTTTACTTCCT
GCCCCTGCTCACCTTTATCCATGCGTTAGGATGTGGGTTGATCTATTACT
CCTTTCCGTACCTTAGCGTGGCCATATCCATGGTAGCCAATGCCATCCAC
TATTCCCTCAAACTGGATCAAACCCTAAAGGCATTGGTTCACTCGTCGGT
GTGGGAGTTAAAAAACGTGGTCATCATAGCTGTGCACTGGATGTTGTTGG
CCTACGGCCTCACCTCCCTGAATTACCACTATGCCTTTATGTGC

BO11949.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG2126-PA 915 CG2126-RA 1..828 17..844 4140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:27:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG2126-RB 1317 CG2126-RB 100..928 16..844 4145 100 Plus
CG2126-RA 1317 CG2126-RA 100..928 16..844 4145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:27:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31775983..31776196 472..259 1070 100 Minus
3R 32079331 3R 31775748..31775920 644..472 865 100 Minus
3R 32079331 3R 31776247..31776383 260..124 685 100 Minus
3R 32079331 3R 31775559..31775693 779..645 675 100 Minus
3R 32079331 3R 31776443..31776553 126..16 555 100 Minus
3R 32079331 3R 31775438..31775504 844..778 335 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:27:42 has no hits.

BO11949.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:27 Download gff for BO11949.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2126-PA 1..828 17..844 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:51:09 Download gff for BO11949.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2126-PA 1..828 17..844 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:39:49 Download gff for BO11949.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2126-RA 100..928 16..844 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:11:02 Download gff for BO11949.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2126-RA 100..928 16..844 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:11:02 Download gff for BO11949.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31775438..31775502 780..844 100 <- Minus
3R 31775559..31775693 645..779 100 <- Minus
3R 31775748..31775920 472..644 100 <- Minus
3R 31775984..31776196 259..471 100 <- Minus
3R 31776249..31776382 125..258 100 <- Minus
3R 31776445..31776553 16..124 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:39:49 Download gff for BO11949.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27601160..27601224 780..844 100 <- Minus
arm_3R 27601281..27601415 645..779 100 <- Minus
arm_3R 27601470..27601642 472..644 100 <- Minus
arm_3R 27601706..27601918 259..471 100 <- Minus
arm_3R 27601971..27602104 125..258 100 <- Minus
arm_3R 27602167..27602275 16..124 100   Minus

BO11949.3prime Sequence

615 bp (499 high quality bases) assembled on 2006-04-19

> BO11949.3prime
ATGGTCTAGAAAGCTTGCAATTCTCGACTCCAGCTCCCGGAACTCGGCAG
GATCCGTGAAACGTACGGTCAAAATATAGAACAGTGTGGGGAAGGGCACC
AAGCACATAAAGGCATAGTGGTAATTCAGGGAGGTGAGGCCGTAGGCCAA
CAACATCCAGTGCACAGCTATGATGACCACGTTTTTTAACTCCCACACCG
ACGAGTGAACCAATGCCTTTAGGGTTTGATCCAGTTTGAGGGAATAGTGG
ATGGCATTGGCTACCATGGATATGGCCACGCTAAGGTACGGAAAGGAGTA
ATAGATCAACCCACATCCTAACGCATGGATAAAGGTGAGCAGGGGCAGGA
AGTAAAGAGCCGAGTAAATCGGCGCCTTGCTTCTGCCCCCCACATCCATA
ATTTTGCTGACTAGCGGGCGTATGAGAAACATGTTCACCAGGCACAGAAA
GTAGAAAACCAGCACGATGGTTTGCAATGGGTAAACTGCCTCCTGGGTGC
AGTAGACTCGTGCCTCATAATTGGGGCTGGGGTTGTAAAACAATGTGTAC
CAGTTAGTAAGTTTTCGAACATCACAGGTGTTGAGGCGCAGCTCCCACAT
GGGCTCCCTTAACAA

BO11949.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG2126-PA 915 CG2126-RA 324..912 607..19 2870 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:34:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG2126-RB 1317 CG2126-RB 416..1012 615..19 2910 99.2 Minus
CG2126-RA 1317 CG2126-RA 416..1012 615..19 2910 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 11:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31775748..31775920 303..475 865 100 Plus
3R 32079331 3R 31775354..31775504 19..169 755 100 Plus
3R 32079331 3R 31775559..31775693 168..302 675 100 Plus
3R 32079331 3R 31775983..31776123 475..615 630 96.5 Plus
Blast to na_te.dros performed on 2015-02-01 11:34:26 has no hits.

BO11949.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:26 Download gff for BO11949.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2126-PA 318..915 16..613 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:51:08 Download gff for BO11949.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2126-PA 318..915 16..613 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:39:01 Download gff for BO11949.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2126-RA 418..1018 13..613 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:13:15 Download gff for BO11949.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2126-RA 418..1018 13..613 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:13:15 Download gff for BO11949.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31775348..31775502 13..167 98 <- Plus
3R 31775559..31775693 168..302 100 <- Plus
3R 31775748..31775920 303..475 100 <- Plus
3R 31775984..31776121 476..613 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:39:01 Download gff for BO11949.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27601070..27601224 13..167 98 <- Plus
arm_3R 27601281..27601415 168..302 100 <- Plus
arm_3R 27601470..27601642 303..475 100 <- Plus
arm_3R 27601706..27601843 476..613 96   Plus

BO11949.complete Sequence

946 bp assembled on 2006-10-11

GenBank Submission: FJ632256

> BO11949.complete
GAAGTTATCAGTCGACATGAGAATGTACGACGCGTTGGAACGCTGCCCAG
GAGCCTACTGTGGGCGATCACCGCTAGGAAACAACAGCTGGAGCAGCTGC
GGGGTCTGTCCCAGAGGATCTCGGGTGAACCAAAGTTACGCATGCTCTCC
ATGCCGCGACGAGTTAAGCACGTACTCCTGGCTATACCTGGGATTCATGA
CCATGCTGCCACTTATGATGCACTGCTTTTTCATTGACATGGACGCCAAG
GATCGCAAGTTTTCGCGGAAGCAGCTGATCTTGACGGCCAGCGCTTTCGT
TGAGGTTGCCATATCTGCCATCCTCGCCACCTTGCTAATGGAGCCCATGT
GGGAGCTGCGCCTCTACGCCTGTGATGTTCGAAAACTTACTGACTGGTAC
ACATTGTTTTACAACCCCAGCCCCAATTATGAGGCACGAGTCTACTGCAC
CCAGGAGGCAGTTTACCCATTGCAAACCATCGTGCTGGTTTTCTACTTTC
TGTGCCTGGTGAACATGTTTCTCATACGCCCGCTAGTCAGCAAAATTATG
GATGTGGGGGGCAGAAGCAAGGCGCCGATTTACTCGGCTCTTTACTTCCT
GCCCCTGCTCACCTTTATCCATGCGTTAGGATGTGGGTTGATCTATTACT
CCTTTCCGTACCTTAGCGTGGCCATATCCATGGTAGCCAATGCCATCCAC
TATTCCCTCAAACTGGATCAAACCCTAAAGGCATTGGTTCACTCGTCGGT
GTGGGAGTTAAAAAACGTGGTCATCATAGCTGTGCACTGGATGTTGTTGG
CCTACGGCCTCACCTCCCTGAATTACCACTATGCCTTTATGTGCTTGGTG
CCCTTCCCCACACTGTTCTATATTTTGACCGTACGTTTCACGGATCCTGC
CGAGTTCCGGGAGCTGGAGTCGAGAATTGCAAGCTTTCTAGACCAT

BO11949.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:10:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG2126-RB 987 CG2126-PB 1..912 17..928 4560 100 Plus
CG2126-RA 915 CG2126-PA 1..912 17..928 4560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG2126-RB 1317 CG2126-RB 100..1012 16..928 4565 100 Plus
CG2126-RA 1317 CG2126-RA 100..1012 16..928 4565 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31775983..31776196 472..259 1070 100 Minus
3R 32079331 3R 31775748..31775920 644..472 865 100 Minus
3R 32079331 3R 31775354..31775504 928..778 755 100 Minus
3R 32079331 3R 31776247..31776383 260..124 685 100 Minus
3R 32079331 3R 31775559..31775693 779..645 675 100 Minus
3R 32079331 3R 31776443..31776553 126..16 555 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:10:00 has no hits.

BO11949.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:58 Download gff for BO11949.complete
Subject Subject Range Query Range Percent Splice Strand
CG2126-RA 1..915 17..931 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:50 Download gff for BO11949.complete
Subject Subject Range Query Range Percent Splice Strand
CG2126-RA 54..972 16..934 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:17 Download gff for BO11949.complete
Subject Subject Range Query Range Percent Splice Strand
CG2126-RA 101..1012 17..930 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:58 Download gff for BO11949.complete
Subject Subject Range Query Range Percent Splice Strand
CG2126-RA 54..972 16..934 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:19 Download gff for BO11949.complete
Subject Subject Range Query Range Percent Splice Strand
CG2126-RA 101..1012 17..930 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:19 Download gff for BO11949.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31776445..31776552 17..124 100   Minus
3R 31775351..31775502 780..930 98 <- Minus
3R 31775559..31775693 645..779 100 <- Minus
3R 31775748..31775920 472..644 100 <- Minus
3R 31775984..31776196 259..471 100 <- Minus
3R 31776249..31776382 125..258 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:17 Download gff for BO11949.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27601073..27601224 780..930 98 <- Minus
arm_3R 27601281..27601415 645..779 100 <- Minus
arm_3R 27601470..27601642 472..644 100 <- Minus
arm_3R 27601706..27601918 259..471 100 <- Minus
arm_3R 27601971..27602104 125..258 100 <- Minus
arm_3R 27602167..27602274 17..124 100   Minus

BO11949.pep Sequence

Translation from 16 to 946

> BO11949.pep
MRMYDALERCPGAYCGRSPLGNNSWSSCGVCPRGSRVNQSYACSPCRDEL
STYSWLYLGFMTMLPLMMHCFFIDMDAKDRKFSRKQLILTASAFVEVAIS
AILATLLMEPMWELRLYACDVRKLTDWYTLFYNPSPNYEARVYCTQEAVY
PLQTIVLVFYFLCLVNMFLIRPLVSKIMDVGGRSKAPIYSALYFLPLLTF
IHALGCGLIYYSFPYLSVAISMVANAIHYSLKLDQTLKALVHSSVWELKN
VVIIAVHWMLLAYGLTSLNYHYAFMCLVPFPTLFYILTVRFTDPAEFREL
ESRIASFLDH

BO11949.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:50:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG2126-PA 304 CG2126-PA 1..304 1..304 1619 100 Plus
CG2126-PB 328 CG2126-PB 1..304 1..304 1619 100 Plus