Clone Sequence Records
BO11949.5prime Sequence
844 bp (790 high quality bases) assembled on 2006-04-19
> BO11949.5prime
GAAGTTATCAGTCGACATGAGAATGTACGACGCGTTGGAACGCTGCCCAG
GAGCCTACTGTGGGCGATCACCGCTAGGAAACAACAGCTGGAGCAGCTGC
GGGGTCTGTCCCAGAGGATCTCGGGTGAACCAAAGTTACGCATGCTCTCC
ATGCCGCGACGAGTTAAGCACGTACTCCTGGCTATACCTGGGATTCATGA
CCATGCTGCCACTTATGATGCACTGCTTTTTCATTGACATGGACGCCAAG
GATCGCAAGTTTTCGCGGAAGCAGCTGATCTTGACGGCCAGCGCTTTCGT
TGAGGTTGCCATATCTGCCATCCTCGCCACCTTGCTAATGGAGCCCATGT
GGGAGCTGCGCCTCTACGCCTGTGATGTTCGAAAACTTACTGACTGGTAC
ACATTGTTTTACAACCCCAGCCCCAATTATGAGGCACGAGTCTACTGCAC
CCAGGAGGCAGTTTACCCATTGCAAACCATCGTGCTGGTTTTCTACTTTC
TGTGCCTGGTGAACATGTTTCTCATACGCCCGCTAGTCAGCAAAATTATG
GATGTGGGGGGCAGAAGCAAGGCGCCGATTTACTCGGCTCTTTACTTCCT
GCCCCTGCTCACCTTTATCCATGCGTTAGGATGTGGGTTGATCTATTACT
CCTTTCCGTACCTTAGCGTGGCCATATCCATGGTAGCCAATGCCATCCAC
TATTCCCTCAAACTGGATCAAACCCTAAAGGCATTGGTTCACTCGTCGGT
GTGGGAGTTAAAAAACGTGGTCATCATAGCTGTGCACTGGATGTTGTTGG
CCTACGGCCTCACCTCCCTGAATTACCACTATGCCTTTATGTGC
BO11949.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2126-PA | 915 | CG2126-RA | 1..828 | 17..844 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:27:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2126-RB | 1317 | CG2126-RB | 100..928 | 16..844 | 4145 | 100 | Plus |
CG2126-RA | 1317 | CG2126-RA | 100..928 | 16..844 | 4145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:27:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31775983..31776196 | 472..259 | 1070 | 100 | Minus |
3R | 32079331 | 3R | 31775748..31775920 | 644..472 | 865 | 100 | Minus |
3R | 32079331 | 3R | 31776247..31776383 | 260..124 | 685 | 100 | Minus |
3R | 32079331 | 3R | 31775559..31775693 | 779..645 | 675 | 100 | Minus |
3R | 32079331 | 3R | 31776443..31776553 | 126..16 | 555 | 100 | Minus |
3R | 32079331 | 3R | 31775438..31775504 | 844..778 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:27:42 has no hits.
BO11949.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:27 Download gff for
BO11949.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2126-PA | 1..828 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:51:09 Download gff for
BO11949.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2126-PA | 1..828 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:39:49 Download gff for
BO11949.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2126-RA | 100..928 | 16..844 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:11:02 Download gff for
BO11949.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2126-RA | 100..928 | 16..844 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:11:02 Download gff for
BO11949.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31775438..31775502 | 780..844 | 100 | <- | Minus |
3R | 31775559..31775693 | 645..779 | 100 | <- | Minus |
3R | 31775748..31775920 | 472..644 | 100 | <- | Minus |
3R | 31775984..31776196 | 259..471 | 100 | <- | Minus |
3R | 31776249..31776382 | 125..258 | 100 | <- | Minus |
3R | 31776445..31776553 | 16..124 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:39:49 Download gff for
BO11949.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27601160..27601224 | 780..844 | 100 | <- | Minus |
arm_3R | 27601281..27601415 | 645..779 | 100 | <- | Minus |
arm_3R | 27601470..27601642 | 472..644 | 100 | <- | Minus |
arm_3R | 27601706..27601918 | 259..471 | 100 | <- | Minus |
arm_3R | 27601971..27602104 | 125..258 | 100 | <- | Minus |
arm_3R | 27602167..27602275 | 16..124 | 100 | | Minus |
BO11949.3prime Sequence
615 bp (499 high quality bases) assembled on 2006-04-19
> BO11949.3prime
ATGGTCTAGAAAGCTTGCAATTCTCGACTCCAGCTCCCGGAACTCGGCAG
GATCCGTGAAACGTACGGTCAAAATATAGAACAGTGTGGGGAAGGGCACC
AAGCACATAAAGGCATAGTGGTAATTCAGGGAGGTGAGGCCGTAGGCCAA
CAACATCCAGTGCACAGCTATGATGACCACGTTTTTTAACTCCCACACCG
ACGAGTGAACCAATGCCTTTAGGGTTTGATCCAGTTTGAGGGAATAGTGG
ATGGCATTGGCTACCATGGATATGGCCACGCTAAGGTACGGAAAGGAGTA
ATAGATCAACCCACATCCTAACGCATGGATAAAGGTGAGCAGGGGCAGGA
AGTAAAGAGCCGAGTAAATCGGCGCCTTGCTTCTGCCCCCCACATCCATA
ATTTTGCTGACTAGCGGGCGTATGAGAAACATGTTCACCAGGCACAGAAA
GTAGAAAACCAGCACGATGGTTTGCAATGGGTAAACTGCCTCCTGGGTGC
AGTAGACTCGTGCCTCATAATTGGGGCTGGGGTTGTAAAACAATGTGTAC
CAGTTAGTAAGTTTTCGAACATCACAGGTGTTGAGGCGCAGCTCCCACAT
GGGCTCCCTTAACAA
BO11949.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:33:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2126-PA | 915 | CG2126-RA | 324..912 | 607..19 | 2870 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:34:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2126-RB | 1317 | CG2126-RB | 416..1012 | 615..19 | 2910 | 99.2 | Minus |
CG2126-RA | 1317 | CG2126-RA | 416..1012 | 615..19 | 2910 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 11:34:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31775748..31775920 | 303..475 | 865 | 100 | Plus |
3R | 32079331 | 3R | 31775354..31775504 | 19..169 | 755 | 100 | Plus |
3R | 32079331 | 3R | 31775559..31775693 | 168..302 | 675 | 100 | Plus |
3R | 32079331 | 3R | 31775983..31776123 | 475..615 | 630 | 96.5 | Plus |
Blast to na_te.dros performed on 2015-02-01 11:34:26 has no hits.
BO11949.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:21:26 Download gff for
BO11949.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2126-PA | 318..915 | 16..613 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:51:08 Download gff for
BO11949.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2126-PA | 318..915 | 16..613 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:39:01 Download gff for
BO11949.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2126-RA | 418..1018 | 13..613 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:13:15 Download gff for
BO11949.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2126-RA | 418..1018 | 13..613 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:13:15 Download gff for
BO11949.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31775348..31775502 | 13..167 | 98 | <- | Plus |
3R | 31775559..31775693 | 168..302 | 100 | <- | Plus |
3R | 31775748..31775920 | 303..475 | 100 | <- | Plus |
3R | 31775984..31776121 | 476..613 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:39:01 Download gff for
BO11949.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27601070..27601224 | 13..167 | 98 | <- | Plus |
arm_3R | 27601281..27601415 | 168..302 | 100 | <- | Plus |
arm_3R | 27601470..27601642 | 303..475 | 100 | <- | Plus |
arm_3R | 27601706..27601843 | 476..613 | 96 | | Plus |
BO11949.complete Sequence
946 bp assembled on 2006-10-11
GenBank Submission: FJ632256
> BO11949.complete
GAAGTTATCAGTCGACATGAGAATGTACGACGCGTTGGAACGCTGCCCAG
GAGCCTACTGTGGGCGATCACCGCTAGGAAACAACAGCTGGAGCAGCTGC
GGGGTCTGTCCCAGAGGATCTCGGGTGAACCAAAGTTACGCATGCTCTCC
ATGCCGCGACGAGTTAAGCACGTACTCCTGGCTATACCTGGGATTCATGA
CCATGCTGCCACTTATGATGCACTGCTTTTTCATTGACATGGACGCCAAG
GATCGCAAGTTTTCGCGGAAGCAGCTGATCTTGACGGCCAGCGCTTTCGT
TGAGGTTGCCATATCTGCCATCCTCGCCACCTTGCTAATGGAGCCCATGT
GGGAGCTGCGCCTCTACGCCTGTGATGTTCGAAAACTTACTGACTGGTAC
ACATTGTTTTACAACCCCAGCCCCAATTATGAGGCACGAGTCTACTGCAC
CCAGGAGGCAGTTTACCCATTGCAAACCATCGTGCTGGTTTTCTACTTTC
TGTGCCTGGTGAACATGTTTCTCATACGCCCGCTAGTCAGCAAAATTATG
GATGTGGGGGGCAGAAGCAAGGCGCCGATTTACTCGGCTCTTTACTTCCT
GCCCCTGCTCACCTTTATCCATGCGTTAGGATGTGGGTTGATCTATTACT
CCTTTCCGTACCTTAGCGTGGCCATATCCATGGTAGCCAATGCCATCCAC
TATTCCCTCAAACTGGATCAAACCCTAAAGGCATTGGTTCACTCGTCGGT
GTGGGAGTTAAAAAACGTGGTCATCATAGCTGTGCACTGGATGTTGTTGG
CCTACGGCCTCACCTCCCTGAATTACCACTATGCCTTTATGTGCTTGGTG
CCCTTCCCCACACTGTTCTATATTTTGACCGTACGTTTCACGGATCCTGC
CGAGTTCCGGGAGCTGGAGTCGAGAATTGCAAGCTTTCTAGACCAT
BO11949.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:10:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2126-RB | 987 | CG2126-PB | 1..912 | 17..928 | 4560 | 100 | Plus |
CG2126-RA | 915 | CG2126-PA | 1..912 | 17..928 | 4560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2126-RB | 1317 | CG2126-RB | 100..1012 | 16..928 | 4565 | 100 | Plus |
CG2126-RA | 1317 | CG2126-RA | 100..1012 | 16..928 | 4565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31775983..31776196 | 472..259 | 1070 | 100 | Minus |
3R | 32079331 | 3R | 31775748..31775920 | 644..472 | 865 | 100 | Minus |
3R | 32079331 | 3R | 31775354..31775504 | 928..778 | 755 | 100 | Minus |
3R | 32079331 | 3R | 31776247..31776383 | 260..124 | 685 | 100 | Minus |
3R | 32079331 | 3R | 31775559..31775693 | 779..645 | 675 | 100 | Minus |
3R | 32079331 | 3R | 31776443..31776553 | 126..16 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:10:00 has no hits.
BO11949.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:58 Download gff for
BO11949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2126-RA | 1..915 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:50 Download gff for
BO11949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2126-RA | 54..972 | 16..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:17 Download gff for
BO11949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2126-RA | 101..1012 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:58 Download gff for
BO11949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2126-RA | 54..972 | 16..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:19 Download gff for
BO11949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2126-RA | 101..1012 | 17..930 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:19 Download gff for
BO11949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31776445..31776552 | 17..124 | 100 | | Minus |
3R | 31775351..31775502 | 780..930 | 98 | <- | Minus |
3R | 31775559..31775693 | 645..779 | 100 | <- | Minus |
3R | 31775748..31775920 | 472..644 | 100 | <- | Minus |
3R | 31775984..31776196 | 259..471 | 100 | <- | Minus |
3R | 31776249..31776382 | 125..258 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:17 Download gff for
BO11949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27601073..27601224 | 780..930 | 98 | <- | Minus |
arm_3R | 27601281..27601415 | 645..779 | 100 | <- | Minus |
arm_3R | 27601470..27601642 | 472..644 | 100 | <- | Minus |
arm_3R | 27601706..27601918 | 259..471 | 100 | <- | Minus |
arm_3R | 27601971..27602104 | 125..258 | 100 | <- | Minus |
arm_3R | 27602167..27602274 | 17..124 | 100 | | Minus |
BO11949.pep Sequence
Translation from 16 to 946
> BO11949.pep
MRMYDALERCPGAYCGRSPLGNNSWSSCGVCPRGSRVNQSYACSPCRDEL
STYSWLYLGFMTMLPLMMHCFFIDMDAKDRKFSRKQLILTASAFVEVAIS
AILATLLMEPMWELRLYACDVRKLTDWYTLFYNPSPNYEARVYCTQEAVY
PLQTIVLVFYFLCLVNMFLIRPLVSKIMDVGGRSKAPIYSALYFLPLLTF
IHALGCGLIYYSFPYLSVAISMVANAIHYSLKLDQTLKALVHSSVWELKN
VVIIAVHWMLLAYGLTSLNYHYAFMCLVPFPTLFYILTVRFTDPAEFREL
ESRIASFLDH
BO11949.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:50:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2126-PA | 304 | CG2126-PA | 1..304 | 1..304 | 1619 | 100 | Plus |
CG2126-PB | 328 | CG2126-PB | 1..304 | 1..304 | 1619 | 100 | Plus |